BAC Information

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BAC

Clone NameB6Ng01-316E09
Chromosome3 (Build37)
Map Location 138,225,165 - 138,323,880
singlet/doubletdoublet
Overlap geneEG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Upstream geneDdit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e
Downstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316E09.bB6Ng01-316E09.g
ACCGA106709GA106710
length272743
definitionB6Ng01-316E09.b B6Ng01-316E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,323,609 - 138,323,880)(138,225,165 - 138,225,900)
sequence
acatacaaccaggctgactggggtttggtttggtttggtttggtttattt
tgtttgagacagactttcagatgtgatccaggttagccttgaactcttgc
ctcagcctctccagtgctgagattataggcacatggggggtggagtggga
gtgggtcattgttccctggaccaggccattcttgttgtttgtttgtttgt
ttgttcatttttcattaacttatttctttattcactttgcatcctgctca
aaggccttctgtgcggcacctt
gaattctttccttttcgcccccctcttttatcttgagatatcaactgcta
acactagtttgatgaaaaaataaaaatttcatctcttgattataagtttt
cacactctggaggagttttcatctgttggtaagttttctttgctttttca
tttgattactgatttcatttggtttcatgcatttttcaactttgctgttg
ctagacttgtgcaccatagcaatcatacatgtacttctctgaagtctgtt
gctgggctgcctcagcttgtgctctgtgcagtctgagatgctgtgagtag
tttagaccattccaaacccatcctgcttccacttacgaggttttgacttt
atgtggggcaaaggtaatacatagtgtgtgggaacctcttggaattctta
tctgggctagtgaactgcagtgagcaaccctcttgaaatgctcggcctgg
gccacaaactcatgatcagccactgtcactgttgacagcgaagggtgcac
tcttctgggtgggcgggctttcattgctttttgaatgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgttaaaatcccattaactacaaaacacccacctg
tgtgagagagaggtcctacacttcattgtaaagtaggctttgtgttaaaa
gttttttcccaaccgtaggctttatttgcttttgagcttggtttaaggtg
ggcatccgctgaaatatggtggtttggttaggtttatgttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138323609_138323880
seq2: B6Ng01-316E09.b_53_324 (reverse)

seq1  AAGGTGCCACACAGGAGGCCTTTGAGCAGGATGCAAAGTGAATAAAGAAA  50
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCGCACAGAAGGCCTTTGAGCAGGATGCAAAGTGAATAAAGAAA  50

seq1  TAAGTTAATGAAAAATAAACAAACAAACAAACAAACAACAAGAATGGCCT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAGTTAATGAAAAATGAACAAACAAACAAACAAACAACAAGAATGGCCT  100

seq1  GGTCCAGGGAACAATGACCCACTCCCACTCCACCCCCCATGTGCCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGGAACAATGACCCACTCCCACTCCACCCCCCATGTGCCTATAA  150

seq1  TCTCAGCACTGGAGAGGCTGAGGCAAGAGTTCAAGGCTAACCTGGATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACTGGAGAGGCTGAGGCAAGAGTTCAAGGCTAACCTGGATCAC  200

seq1  ATCTGAAAGTCTGTCTCAAACAAAATAAACCAAACCAAACCAAACCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGTCTGTCTCAAACAAAATAAACCAAACCAAACCAAACCAAAC  250

seq1  CCCAGTCAGCCTGGTTGTATGT  272
      ||||||||||||||||||||||
seq2  CCCAGTCAGCCTGGTTGTATGT  272

seq1: chr3_138225165_138225900
seq2: B6Ng01-316E09.g_68_810

seq1  GAATTCTTTCCTTTTCGCCCCCCTCTTTTATCTTGAGATATCAACTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTTTCGCCCCCCTCTTTTATCTTGAGATATCAACTGCTA  50

seq1  ACACTAGTTTGATGAAAAAATAAAAATTTCATCTCTTGATTATAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTTTGATGAAAAAATAAAAATTTCATCTCTTGATTATAAGTTTT  100

seq1  CACACTCTGGAGGAGTTTTCATCTGTTGGTAAGTTTTCTTTGCTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTGGAGGAGTTTTCATCTGTTGGTAAGTTTTCTTTGCTTTTTCA  150

seq1  TTTGATTACTGATTTCATTTGGTTTCATGCATTTTTCAACTTTGCTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTACTGATTTCATTTGGTTTCATGCATTTTTCAACTTTGCTGTTG  200

seq1  CTAGACTTGTGCACCATAGCAATCATACATGTACTTCTCTGAAGTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTGTGCACCATAGCAATCATACATGTACTTCTCTGAAGTCTGTT  250

seq1  GCTGGGCTGCCTCAGCTTGTGCTCTGTGCAGTCTGAGATGCTGTGAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGCCTCAGCTTGTGCTCTGTGCAGTCTGAGATGCTGTGAGTAG  300

seq1  TTTAGACCATTCCAAACCCATCCTGCTTCCACTTACGAGGTTTTGACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCATTCCAAACCCATCCTGCTTCCACTTACGAGGTTTTGACTTT  350

seq1  ATGTGGGGCAAAGGTAATACATAGTGTGTGGGAACCTCTTGGAATTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCAAAGGTAATACATAGTGTGTGGGAACCTCTTGGAATTCTTA  400

seq1  TCTGGGCTAGTGAACTGCAGTGAGCAACCCTCTTGAAATGCTCGGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTAGTGAACTGCAGTGAGCAACCCTCTTGAAATGCTCGGCCTGG  450

seq1  GCCACAAACTCATGATCAGCCACTGTCACTGTTGACAGCGAAGGGTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAACTCATGATCAGCCACTGTCACTGTTGACAGCGAAGGGTGCAC  500

seq1  TCTTCTGGGTGGGCGGGCTTTCATTGCTTTTTGAATGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGTGGGCGGGCTTTCATTGCTTTTTGAATGTGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTGTGTTAAAATCCCATTAACTACAAAACACCCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTAAAATCCCATTAACTACAAAACACCCACCTG  600

seq1  TGTGAGAGAGAGGTCCTACACTTCATTGTAAAGTAGGCTTTGTGTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAGAGGTCCTACACTTCATTGTAAAGTAGGCTTTGTGTTAAAA  650

seq1  G-TTTTTCCCAACCGTAGGC-TTATTTGC-TTTGAGC-TGGTTTAAGGT-  695
      | |||||||||||||||||| |||||||| ||||||| ||||||||||| 
seq2  GTTTTTTCCCAACCGTAGGCTTTATTTGCTTTTGAGCTTGGTTTAAGGTG  700

seq1  GGCATCCGCTGAAATATGGTGG-TTGGTTAGG-TTAGGTTAGG  736
      |||||||||||||||||||||| ||||||||| ||| ||||||
seq2  GGCATCCGCTGAAATATGGTGGTTTGGTTAGGTTTATGTTAGG  743