BAC Information

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BAC

Clone NameB6Ng01-316H23
Chromosome3 (Build37)
Map Location 107,323,523 - 107,466,808
singlet/doubletdoublet
Overlap geneUbl4b, Alx3, 6330569M22Rik, Ahcyl1
Upstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
Downstream geneCsf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H23.bB6Ng01-316H23.g
ACCGA106879GA106880
length1,1811,138
definitionB6Ng01-316H23.b B6Ng01-316H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,465,629 - 107,466,808)(107,323,523 - 107,324,654)
sequence
gaattccaagaggccctctaaaaatcagagagttattcccaggccacgca
cctgcttgccaatatctctgcatggtcaaatgagcttcatgctcacaagc
tttaagtatataactatccaggattttaagtcctcaacgtgttctagctt
gtgatccttcaaagatgggttatgtgttaatgataggtactagaaatgtt
tacttctctctttccactgatcagagaaacaggcattaaagacagaatgc
aagaacggaaagcttttaccctgcaccttccttgcagggaacaattatct
tgccaaaacgtctttccctttcatctcccatttctctgtacccagtccct
tcctgctccttgccaatgtgatcatgctttcttctctataaatgctaaca
tttgaagacccctttcctagggcacttaaccatccagtcagaccatcaca
ttcagtagggacttgtcttggctaacagcagtgtatccatctggtcagct
ctactgagggaaggggccaagttactgctgccctctaatctgccctctgg
tcctatatctattactgtgtccataggaataataggtaagggctagtctc
tgtcaagccatgtaacaaaggacactgcaaaatgtctggcatcagagggg
acatttggagaccaacttgggaggaaaatattcattttgtattgaatgat
ttttaatgaatgcaatattaatccttgcagatgagcaataatcattaaaa
tcagttaaaaatgataagacatttagtagtcgtgtgtcttttttggttaa
atagcaaaacttgattagaccctgtttcctaggatgagacaagccgtttg
aagacaagatctgtcttacataagctggcctcagacttcttgaatcaagt
catcctaactcaatcttccaagtagctgggatatagcattaaaccagtgc
accctattatcattaattaatacccttaagttgttatgatatggatatga
atatcctaaaatctgatgtcactgttgagtgtgcactgaaccttaggagg
tagaccaatgcagtgcctaaggtcacttggaagtgtgccttgacatgaat
ggaatgcccatcgccaactatttgtttttgcaatcctagcctagtggaga
aatgaacaggttgtttccaccttggaatttt
gaattctacttggtccttttgtcactctgcgttgtttctctgttgctggt
atattcattctagagtttcctgagtgtggcgcactcaattctttacattt
ccaggcagatgtccttattcagagaccacccccacccccacgtcctgaaa
aacagtcaactttgtgcctactgccccatatccaactctccatgtcagaa
acccatctgtcaccttgcaacccacctcctccttatcccttcgtgatatc
cacattaaatcctggaggtcttagctactaagtgcctctagcatctggcc
acttctctttaattctgtcatgatcttggtctaaactataaccaccactc
acctggacactcatagtctcctgactcagacccagattcaccccttttct
cctttcaagaggagtctttagaagtgaagatgtaacggcacccttctcaa
gcccacagtgcctcggagccctttctcgtctccactctcatccatcactc
ctccctctctggcttttctgcagcccacttgctccagtagccttctctct
actcttcctacgctttcctggctcaaacttcaggcccatctgctggcccc
tcctcctcttccttcgtttcctggccattcacccatatctttctgaccat
ggaggagagtaatgctaacccctcaggtggatacccctttgtagcctttc
ttacaacaatggttaggtgtttaaagatgtgactggtttcttgagaatgg
tctccttggctgacctggaagctccataaaggcagagatcatgtctatcc
tcaaaacacaatgggctctctacaaacattaactaaaagaatggaaaaga
gtggttagacatgttgagtaagaacaccaggagggcaggctgggttcaaa
tccagaagtcctaaccacagaggacaatgctcagaccatgcagaggaaga
gtggtagatggtctggagggagttctcagtttgagactgactagtgaatg
gactgacttctaagccagggaagaaggagcgtcagaataaggagaacagg
aaggcagaattgggagggcagcgttgtgctacagaagtttctagaaagga
acgccaatctgcaagtttaacctgcaagaattcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107465629_107466808
seq2: B6Ng01-316H23.b_47_1227 (reverse)

seq1  AAAATT-CAAGGTGGAAACAAAACTGTTCATCT---CACTA-GCTAGGA-  44
      |||||| |||||||||||| || |||||||| |   ||||| ||||||| 
seq2  AAAATTCCAAGGTGGAAAC-AACCTGTTCATTTCTCCACTAGGCTAGGAT  49

seq1  TGCAAAAAC-AATAGTGGGCGAT-GGCATACCATTCCTGTCAAGGGCACA  92
      ||||||||| |||||| |||||| ||||| |||||| |||||| ||||||
seq2  TGCAAAAACAAATAGTTGGCGATGGGCATTCCATTCATGTCAA-GGCACA  98

seq1  CTTCC-AGTGACC-TAAGCACCTTCCATTTGGTCCTACCTCCTAAAGGTT  140
      ||||| ||||||| || ||||  | || ||||| ||||||||| ||||||
seq2  CTTCCAAGTGACCTTAGGCAC--TGCA-TTGGT-CTACCTCCT-AAGGTT  143

seq1  CCAGTGCACCACTCAACAGTGACATCAGATTTTAGGATATTCAATATCCA  190
       ||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  -CAGTGCA-CACTCAACAGTGACATCAGATTTTAGGATATTC-ATATCCA  190

seq1  TATCATAACAACTTAA-GGTATTAATTAATGATAATAGGGTGCACTGGTT  239
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCATAACAACTTAAGGGTATTAATTAATGATAATAGGGTGCACTGGTT  240

seq1  TAATGCTATATCCCAGCTACTTGGAAGATTGAGTTAGGATGACTTGATTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTATATCCCAGCTACTTGGAAGATTGAGTTAGGATGACTTGATTC  290

seq1  AAGAAGTCTGAGGCCAGCTTATGTAAGACAGATCTTGTCTTCAAACGGCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTGAGGCCAGCTTATGTAAGACAGATCTTGTCTTCAAACGGCT  340

seq1  TGTCTCATCCTAGGAAACAGGGTCTAATCAAGTTTTGCTATTTAACCAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATCCTAGGAAACAGGGTCTAATCAAGTTTTGCTATTTAACCAAA  390

seq1  AAAGACACACGACTACTAAATGTCTTATCATTTTTAACTGATTTTAATGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACACGACTACTAAATGTCTTATCATTTTTAACTGATTTTAATGA  440

seq1  TTATTGCTCATCTGCAAGGATTAATATTGCATTCATTAAAAATCATTCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTCATCTGCAAGGATTAATATTGCATTCATTAAAAATCATTCAA  490

seq1  TACAAAATGAATATTTTCCTCCCAAGTTGGTCTCCAAATGTCCCCTCTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGAATATTTTCCTCCCAAGTTGGTCTCCAAATGTCCCCTCTGA  540

seq1  TGCCAGACATTTTGCAGTGTCCTTTGTTACATGGCTTGACAGAGACTAGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACATTTTGCAGTGTCCTTTGTTACATGGCTTGACAGAGACTAGC  590

seq1  CCTTACCTATTATTCCTATGGACACAGTAATAGATATAGGACCAGAGGGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTATTATTCCTATGGACACAGTAATAGATATAGGACCAGAGGGC  640

seq1  AGATTAGAGGGCAGCAGTAACTTGGCCCCTTCCCTCAGTAGAGCTGACCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAGGGCAGCAGTAACTTGGCCCCTTCCCTCAGTAGAGCTGACCA  690

seq1  GATGGATACACTGCTGTTAGCCAAGACAAGTCCCTACTGAATGTGATGGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATACACTGCTGTTAGCCAAGACAAGTCCCTACTGAATGTGATGGT  740

seq1  CTGACTGGATGGTTAAGTGCCCTAGGAAAGGGGTCTTCAAATGTTAGCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGATGGTTAAGTGCCCTAGGAAAGGGGTCTTCAAATGTTAGCAT  790

seq1  TTATAGAGAAGAAAGCATGATCACATTGGCAAGGAGCAGGAAGGGACTGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGAAGAAAGCATGATCACATTGGCAAGGAGCAGGAAGGGACTGG  840

seq1  GTACAGAGAAATGGGAGATGAAAGGGAAAGACGTTTTGGCAAGATAATTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAATGGGAGATGAAAGGGAAAGACGTTTTGGCAAGATAATTG  890

seq1  TTCCCTGCAAGGAAGGTGCAGGGTAAAAGCTTTCCGTTCTTGCATTCTGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCAAGGAAGGTGCAGGGTAAAAGCTTTCCGTTCTTGCATTCTGT  940

seq1  CTTTAATGCCTGTTTCTCTGATCAGTGGAAAGAGAGAAGTAAACATTTCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCCTGTTTCTCTGATCAGTGGAAAGAGAGAAGTAAACATTTCT  990

seq1  AGTACCTATCATTAACACATAACCCATCTTTGAAGGATCACAAGCTAGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTATCATTAACACATAACCCATCTTTGAAGGATCACAAGCTAGAA  1040

seq1  CACGTTGAGGACTTAAAATCCTGGATAGTTATATACTTAAAGCTTGTGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGAGGACTTAAAATCCTGGATAGTTATATACTTAAAGCTTGTGAG  1090

seq1  CATGAAGCTCATTTGACCATGCAGAGATATTGGCAAGCAGGTGCGTGGCC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCTCATTTGACCATGCAGAGATATTGGCAAGCAGGTGCGTGGCC  1140

seq1  TGGGAATAACTCTCTGATTTTTAGAGGGCCTCTTGGAATTC  1180
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAACTCTCTGATTTTTAGAGGGCCTCTTGGAATTC  1181

seq1: chr3_107323523_107324654
seq2: B6Ng01-316H23.g_68_1205

seq1  GAATTCTACTTGGTCCTTTTGTCACTCTGCGTTGTTTCTCTGTTGCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTGGTCCTTTTGTCACTCTGCGTTGTTTCTCTGTTGCTGGT  50

seq1  ATATTCATTCTAGAGTTTCCTGAGTGTGGCGCACTCAATTCTTTACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTCTAGAGTTTCCTGAGTGTGGCGCACTCAATTCTTTACATTT  100

seq1  CCAGGCAGATGTCCTTATTCAGAGACCACCCCCACCCCCACGTCCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGATGTCCTTATTCAGAGACCACCCCCACCCCCACGTCCTGAAA  150

seq1  AACAGTCAACTTTGTGCCTACTGCCCCATATCCAACTCTCCATGTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAACTTTGTGCCTACTGCCCCATATCCAACTCTCCATGTCAGAA  200

seq1  ACCCATCTGTCACCTTGCAACCCACCTCCTCCTTATCCCTTCGTGATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTGTCACCTTGCAACCCACCTCCTCCTTATCCCTTCGTGATATC  250

seq1  CACATTAAATCCTGGAGGTCTTAGCTACTAAGTGCCTCTAGCATCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAATCCTGGAGGTCTTAGCTACTAAGTGCCTCTAGCATCTGGCC  300

seq1  ACTTCTCTTTAATTCTGTCATGATCTTGGTCTAAACTATAACCACCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTTTAATTCTGTCATGATCTTGGTCTAAACTATAACCACCACTC  350

seq1  ACCTGGACACTCATAGTCTCCTGACTCAGACCCAGATTCACCCCTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACACTCATAGTCTCCTGACTCAGACCCAGATTCACCCCTTTTCT  400

seq1  CCTTTCAAGAGGAGTCTTTAGAAGTGAAGATGTAACGGCACCCTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGAGGAGTCTTTAGAAGTGAAGATGTAACGGCACCCTTCTCAA  450

seq1  GCCCACAGTGCCTCGGAGCCCTTTCTCGTCTCCACTCTCATCCATCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTGCCTCGGAGCCCTTTCTCGTCTCCACTCTCATCCATCACTC  500

seq1  CTCCCTCTCTGGCTTTTCTGCAGCCCACTTGCTCCAGTAGCCTTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCTGGCTTTTCTGCAGCCCACTTGCTCCAGTAGCCTTCTCTCT  550

seq1  ACTCTTCCTACGCTTTCCTGGCTCAAACTTCAGGCCCATCTGCTGGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTACGCTTTCCTGGCTCAAACTTCAGGCCCATCTGCTGGCCCC  600

seq1  TCCTCCTCTTCCTTCGTTTCCTGGCCATTCACCCATATCTTTCTGACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTCCTTCGTTTCCTGGCCATTCACCCATATCTTTCTGACCAT  650

seq1  GGAGGAGAGTAATGCTAACCCCTCAGGTGGATACCCCTTTGTAGCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGTAATGCTAACCCCTCAGGTGGATACCCCTTTGTAGCCTTTC  700

seq1  TTACAACAATGGTTAGGTGTTTAAAGATGTGACTGGTTTCTTGAGAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAATGGTTAGGTGTTTAAAGATGTGACTGGTTTCTTGAGAATGG  750

seq1  TCTCCTTGGCTGACCTGGAAGCTCCATAAAGGCAGAGATCATGTCTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGGCTGACCTGGAAGCTCCATAAAGGCAGAGATCATGTCTATCC  800

seq1  TCAAAACACAATGGGCTCTCTACAAACATTAACTAAAAGAATGGAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACACAATGGGCTCTCTACAAACATTAACTAAAAGAATGGAAAAGA  850

seq1  GTGGTTAGACATG-TGAGTAAGAACACCAGGAGGGCAGGCTGGGTTCAAA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGACATGTTGAGTAAGAACACCAGGAGGGCAGGCTGGGTTCAAA  900

seq1  TCCAGAAGTCCTAACCACAGAGGACAATGCTCAGACCATGCAGAGGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGTCCTAACCACAGAGGACAATGCTCAGACCATGCAGAGGAAGA  950

seq1  GTGG-AGATGGTCTGGAGGGAG-TCTCAGTTTGAGGACTGACTAGTGAAA  997
      |||| ||||||||||||||||| ||||||||||| |||||||||||||| 
seq2  GTGGTAGATGGTCTGGAGGGAGTTCTCAGTTTGA-GACTGACTAGTGAAT  999

seq1  GGACTGACTTCTAAGGCAGGG-AGAAGGAGGGTCAGAA-AAGGAG-ACAG  1044
      ||||||||||||||| ||||| |||||||| ||||||| |||||| ||||
seq2  GGACTGACTTCTAAGCCAGGGAAGAAGGAGCGTCAGAATAAGGAGAACAG  1049

seq1  GAAGGCAAGAATTGGGAGGGCAGTG-TGTGTTACAGAAGTTTCTAG-AAG  1092
      |||||| |||||||||||||||| | |||| ||||||||||||||| |||
seq2  GAAGGC-AGAATTGGGAGGGCAGCGTTGTGCTACAGAAGTTTCTAGAAAG  1098

seq1  GAAAGGCAATCTGCAGTGTCAAAACTGCAAGAA-TCAGAGA  1132
      ||| | |||||||||  ||  || ||||||||| |||||||
seq2  GAACGCCAATCTGCA-AGTTTAACCTGCAAGAATTCAGAGA  1138