BAC Information

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BAC

Clone NameB6Ng01-317F15
Chromosome3 (Build37)
Map Location 146,175,747 - 146,356,543
singlet/doubletdoublet
Overlap geneBxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652
Upstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5
Downstream geneLOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F15.bB6Ng01-317F15.g
ACCGA107519GA107520
length1,1531,149
definitionB6Ng01-317F15.b B6Ng01-317F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,355,383 - 146,356,543)(146,175,747 - 146,176,900)
sequence
gaattcagtctgctatcccttgttgctaagtcctggcttgtcagttattc
tgaaattatccctcatttctcatcgactcgcggttaatagtcacacatca
tccagtcctcacagtaaagtgttggcattacgtgtcttgtaaacgctctg
gcctaaatcacctctgcagtactcatctgtctcatgtgacagacacatct
cacactggatttgttttcaaatacgtatctgactttctccacatgtggtg
cgatggccaccattctaagtgagaacctcaggtattgcagcaatcacagg
gacatcaactccgccagtgctggcaagttctttttcattggaaacacatg
ggtctgtttcctattcaacacccaaaccccaattttgccatacaaaactc
tctgttgtacaatacataacatatcttggaagaactaacatttaagaaag
atggttgaacaaactgtaacgtctgtattagtttctaaagcctgccatct
ttgttaagattattattgctgtgaaggaacaccacgatcaaaggcacttg
gggaagaaagcgtttatttggcttccacttccactgtactgttcattgtt
gacagaagtcaggcaggaccggaacttaaatggggtagaaaccttgagtc
aggattcaatacagaggccatagagggatgctgcttactgtcttaaagaa
cccaggacggataccactcacaatgggctggaccctcccccattgattaa
gcaattaagaaaatggtcagtagtctttcgtacagcaagatcttctggag
gcatttcctcagttgaggctcctccctttctgctgacttgagctcgtgtc
aaactgacacaaaactagccattgcagctgatgtgttgaaagtatcgcaa
ccctagtatgttaacacaacacacactctattactcaccatctgaaacca
gcattgacagaatcgtgctccctctaacttttctagcaatgggtctatct
atccttgcttctaataggttctgtgctgctgctgcattccttggcttgtg
ttagcctaacatcactctacgctgccctgtatcctctttgctcatagtct
gcttcctccctatttcttctgcttttagaaggacaccacttacctgggtt
agc
gaattcagggactacacgaatcaacgtgcttaccccatgaggtctatctg
acgttgtgataagaatcttaggagacgtctgtctgttgaagtaagaagca
aattcatccgtcgcttcatcgtaagccacctgagaagagaggagaggtca
ttttccgtcacacagttcatgagcacgggttttcaagcactgcctgcctg
actgttgggtgacattaacagtgacatacacgcagaagctgatccccctt
ctgcacaagtgtgaacggccagtgtcaaactaatcttagcgcacacacta
agatgtgtgcattcttgcaaaatggctacagacatgagcaaaaataccaa
tcccgaccaatgctgctcccccgcctcatcctctcggtgggggacaacaa
cagccccagcttttagggacgggatcgcagtctagagtggaagaggacaa
gaataagaggtaagaagaagttaagaacacagcttagtcagaccagggtt
gcagacctcccttagggtaggcagggagtagccatttacatttctgaatg
tacatttacatttctgaaggcattcctcaacacatgcacagctcagatga
gaaggatgcatgtctgagggactccaggtgttcaacagtacctgcctagt
caatgactgataaaaagcatgtgataaaaacagacagtcagcagcaatgc
agatgaaagacaaaaggagactgaggggacactgtccaaaacagagtgac
ctcccactctgaagtgcaggtaagctgcagacacgaacagtccttaaaca
gtgaactagagccgagcacacgagctcagccccagggaggctgaggcagg
aggactgcctttgagcttgaagccaggctgggctacactgtctagggcag
cctgcattacagagggagatcctgtcaattaaacaaatccaaaataaact
aattaaataatttacattctagaactacaacacggtattgactaaaattg
tcttaacgttcggccaaacttgatagaaaaggagtatgaatacacagtca
ggggaaatagttgcagtgttggctgacccatgaactgaaacatttcaact
agatagcaacatgtccagtgtgggagatcaggaagcatcctagatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146355383_146356543
seq2: B6Ng01-317F15.b_47_1199 (reverse)

seq1  GCTAACCCAG--TAGTGGTGTCCTTCTTAAAAAGCAGAAAGAAATAGGGA  48
      ||||||||||   ||||||||||||||  |||||||| ||||||||||||
seq2  GCTAACCCAGGTAAGTGGTGTCCTTCT--AAAAGCAG-AAGAAATAGGGA  47

seq1  GGAAGGCAGAACTATGAAGGCAAAGA-GATACA-GGCAGCGGTAGAGTTG  96
      |||| |||| |||||||  ||||||| |||||| |||||| |||||| ||
seq2  GGAA-GCAG-ACTATGA--GCAAAGAGGATACAGGGCAGC-GTAGAG-TG  91

seq1  ATGTTAAGCTAACACAAGCCAAGGAATGCCAGCAGCAGCAACAAGAACCT  146
      |||||| ||||||||||||||||||||| |||||||||||   |||||||
seq2  ATGTTAGGCTAACACAAGCCAAGGAATG-CAGCAGCAGCA--CAGAACCT  138

seq1  ATTAGAAGCAAGGATAGATAGACCCATTGCTAGAAAAGTTAGAGGGAGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGCAAGGATAGATAGACCCATTGCTAGAAAAGTTAGAGGGAGCA  188

seq1  CGATTCTGTCAATGCTGGTTTCAGATGGTGAGTAATAGAGTGTGTGTTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCTGTCAATGCTGGTTTCAGATGGTGAGTAATAGAGTGTGTGTTGT  238

seq1  GTTAACATACTAGGGTTGCGATACTTTCAACACATCAGCTGCAATGGCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATACTAGGGTTGCGATACTTTCAACACATCAGCTGCAATGGCTA  288

seq1  GTTTTGTGTCAGTTTGACACGAGCTCAAGTCAGCAGAAAGGGAGGAGCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTCAGTTTGACACGAGCTCAAGTCAGCAGAAAGGGAGGAGCCT  338

seq1  CAACTGAGGAAATGCCTCCAGAAGATCTTGCTGTACGAAAGACTACTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGGAAATGCCTCCAGAAGATCTTGCTGTACGAAAGACTACTGAC  388

seq1  CATTTTCTTAATTGCTTAATCAATGGGGGAGGGTCCAGCCCATTGTGAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTAATTGCTTAATCAATGGGGGAGGGTCCAGCCCATTGTGAGT  438

seq1  GGTATCCGTCCTGGGTTCTTTAAGACAGTAAGCAGCATCCCTCTATGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCGTCCTGGGTTCTTTAAGACAGTAAGCAGCATCCCTCTATGGCC  488

seq1  TCTGTATTGAATCCTGACTCAAGGTTTCTACCCCATTTAAGTTCCGGTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTGAATCCTGACTCAAGGTTTCTACCCCATTTAAGTTCCGGTCC  538

seq1  TGCCTGACTTCTGTCAACAATGAACAGTACAGTGGAAGTGGAAGCCAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTTCTGTCAACAATGAACAGTACAGTGGAAGTGGAAGCCAAAT  588

seq1  AAACGCTTTCTTCCCCAAGTGCCTTTGATCGTGGTGTTCCTTCACAGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTTTCTTCCCCAAGTGCCTTTGATCGTGGTGTTCCTTCACAGCAA  638

seq1  TAATAATCTTAACAAAGATGGCAGGCTTTAGAAACTAATACAGACGTTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCTTAACAAAGATGGCAGGCTTTAGAAACTAATACAGACGTTAC  688

seq1  AGTTTGTTCAACCATCTTTCTTAAATGTTAGTTCTTCCAAGATATGTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCAACCATCTTTCTTAAATGTTAGTTCTTCCAAGATATGTTAT  738

seq1  GTATTGTACAACAGAGAGTTTTGTATGGCAAAATTGGGGTTTGGGTGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTACAACAGAGAGTTTTGTATGGCAAAATTGGGGTTTGGGTGTTG  788

seq1  AATAGGAAACAGACCCATGTGTTTCCAATGAAAAAGAACTTGCCAGCACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAACAGACCCATGTGTTTCCAATGAAAAAGAACTTGCCAGCACT  838

seq1  GGCGGAGTTGATGTCCCTGTGATTGCTGCAATACCTGAGGTTCTCACTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAGTTGATGTCCCTGTGATTGCTGCAATACCTGAGGTTCTCACTTA  888

seq1  GAATGGTGGCCATCGCACCACATGTGGAGAAAGTCAGATACGTATTTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGGCCATCGCACCACATGTGGAGAAAGTCAGATACGTATTTGAA  938

seq1  AACAAATCCAGTGTGAGATGTGTCTGTCACATGAGACAGATGAGTACTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCCAGTGTGAGATGTGTCTGTCACATGAGACAGATGAGTACTGC  988

seq1  AGAGGTGATTTAGGCCAGAGCGTTTACAAGACACGTAATGCCAACACTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGATTTAGGCCAGAGCGTTTACAAGACACGTAATGCCAACACTTT  1038

seq1  ACTGTGAGGACTGGATGATGTGTGACTATTAACCGCGAGTCGATGAGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGACTGGATGATGTGTGACTATTAACCGCGAGTCGATGAGAAA  1088

seq1  TGAGGGATAATTTCAGAATAACTGACAAGCCAGGACTTAGCAACAAGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATAATTTCAGAATAACTGACAAGCCAGGACTTAGCAACAAGGGA  1138

seq1  TAGCAGACTGAATTC  1161
      |||||||||||||||
seq2  TAGCAGACTGAATTC  1153

seq1: chr3_146175747_146176900
seq2: B6Ng01-317F15.g_65_1213

seq1  GAATTCAGGGACTACACGAATCAACGTGCTTACCCCATGAGGTCTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACTACACGAATCAACGTGCTTACCCCATGAGGTCTATCTG  50

seq1  ACGTTGTGATAAGAATCTTAGGAGACGTCTGTCTGTTGAAGTAAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTGATAAGAATCTTAGGAGACGTCTGTCTGTTGAAGTAAGAAGCA  100

seq1  AATTCATCCGTCGCTTCATCGTAAGCCACCTGAGAAGAGAGGAGAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCCGTCGCTTCATCGTAAGCCACCTGAGAAGAGAGGAGAGGTCA  150

seq1  TTTTCCGTCACACAGTTCATGAGCACGGGTTTTCAAGCACTGCCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGTCACACAGTTCATGAGCACGGGTTTTCAAGCACTGCCTGCCTG  200

seq1  ACTGTTGGGTGACATTAACAGTGACATACACGCAGAAGCTGATCCCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGGTGACATTAACAGTGACATACACGCAGAAGCTGATCCCCCTT  250

seq1  CTGCACAAGTGTGAACGGCCAGTGTCAAACTAATCTTAGCGCACACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGTGTGAACGGCCAGTGTCAAACTAATCTTAGCGCACACACTA  300

seq1  AGATGTGTGCATTCTTGCAAAATGGCTACAGACATGAGCAAAAATACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTGCATTCTTGCAAAATGGCTACAGACATGAGCAAAAATACCAA  350

seq1  TCCCGACCAATGCTGCTCCCCCGCCTCATCCTCTCGGTGGGGGACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGACCAATGCTGCTCCCCCGCCTCATCCTCTCGGTGGGGGACAACAA  400

seq1  CAGCCCCAGCTTTTAGGGACGGGATCGCAGTCTAGAGTGGAAGAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGCTTTTAGGGACGGGATCGCAGTCTAGAGTGGAAGAGGACAA  450

seq1  GAATAAGAGGTAAGAAGAAGTTAAGAACACAGCTTAGTCAGACCAGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAGGTAAGAAGAAGTTAAGAACACAGCTTAGTCAGACCAGGGTT  500

seq1  GCAGACCTCCCTTAGGGTAGGCAGGGAGTAGCCATTTACATTTCTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTCCCTTAGGGTAGGCAGGGAGTAGCCATTTACATTTCTGAATG  550

seq1  TACATTTACATTTCTGAAGGCATTCCTCAACACATGCACAGCTCAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACATTTCTGAAGGCATTCCTCAACACATGCACAGCTCAGATGA  600

seq1  GAAGGATGCATGTCTGAGGGACTCCAGGTGTTCAACAGTACCTGCCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGCATGTCTGAGGGACTCCAGGTGTTCAACAGTACCTGCCTAGT  650

seq1  CAATGACTGATAAAAAGCATGTGATAAAAACAGACAGTCAGCAGCAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGATAAAAAGCATGTGATAAAAACAGACAGTCAGCAGCAATGC  700

seq1  AGATGAAAGACAAAAGGAGACTGAGGGGACACTGTCCAAAACAGAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGACAAAAGGAGACTGAGGGGACACTGTCCAAAACAGAGTGAC  750

seq1  CTCCCACTCTGAAGTGCAGGTAAGCTGCAGACACGAACAGTCCTTAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTCTGAAGTGCAGGTAAGCTGCAGACACGAACAGTCCTTAAACA  800

seq1  GTGAACTAGAGCCGAGCACACGAGCTCAGCCCCAGGGAGGCTGAGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTAGAGCCGAGCACACGAGCTCAGCCCCAGGGAGGCTGAGGCAGG  850

seq1  AGGACTGCC-TTGAGCTTGAAGCCAGGCTGGGCTACACTGTCTAGGGCAG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCCTTTGAGCTTGAAGCCAGGCTGGGCTACACTGTCTAGGGCAG  900

seq1  CCTGCATTACAGAGGGAGATCCTGTCAATTAAACAAATCCAAAATAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTACAGAGGGAGATCCTGTCAATTAAACAAATCCAAAATAAACT  950

seq1  AATTAAATAATTTACAATCTAGAACTACAACACGGTATTGACTAAAA-TG  998
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AATTAAATAATTTACATTCTAGAACTACAACACGGTATTGACTAAAATTG  1000

seq1  TCTTAACGTTCGGCCAAAACTTGATAGAAAAGGAGTATG-ATACACAGTC  1047
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TCTTAACGTTCGGCC-AAACTTGATAGAAAAGGAGTATGAATACACAGTC  1049

seq1  AGGGGAAATAGTTGGCAGTG-TGGCTGACACATGAACTGAAAAACAATTC  1096
      ||||||||||||| |||||| |||||||| ||||||||||||    ||| 
seq2  AGGGGAAATAGTT-GCAGTGTTGGCTGACCCATGAACTGAAA---CATTT  1095

seq1  CAACTAGATAGCAACATGGCCCAGTGT-GGAGAACCAAGAAAGCATCCTA  1145
      ||||||||||||||||| | ||||||| ||||| |  || ||||||||||
seq2  CAACTAGATAGCAACAT-GTCCAGTGTGGGAGATC--AGGAAGCATCCTA  1142

seq1  GAAATGCAA  1154
      |  ||||||
seq2  G--ATGCAA  1149