BAC Information

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BAC

Clone NameB6Ng01-317N02
Chromosome3 (Build37)
Map Location 16,700,456 - 16,817,004
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N02.bB6Ng01-317N02.g
ACCGA107869GA107870
length1,1751,126
definitionB6Ng01-317N02.b B6Ng01-317N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,815,825 - 16,817,004)(16,700,456 - 16,701,082)
sequence
gaattctttgagacaaaatgctgtatgggttatattaggtgcaaaagtac
ataatagattgccagaacttcgatgttcaagagaacacttacttaaagaa
aatagtggccctcatgttcctattcttgcgtgtataaaccagtaaaaaat
taaaatttagaaagtattaaacaaaaacatttttatcctgtatatctcca
ggaatttaattaaagtaatatattaagagaccaattttggtctgtggtag
aattttaatgtgagaaggtaagaacaaaggcattccaagagttgttctgt
gagatatgttagtgtccagatactgaagcctctgactatatttggagagc
ttctcccttctaaaacagcatttttgctcatagataccagttctagcatt
ttcatcttcaaatagggagtgttagatacctgtggctatgattcctgaca
tagtttggcattccaagcaacacattggatctcagtgcccagttctactg
atgtctctatcagtatccaacttttgaaatattattatgggctcccttat
gagtataaaacttgaagctgatctatggtcctagaagagattctgtgagt
aactcaatatctttttttaatatggttcactgtcttgccatatatcaggc
acagtgaactttttcagctaagattgctgactgatccagtagccaaattg
gatctctttgagttagacagtctcatatatcttgaaaagtacaaattgaa
cagcaataatctgagcagctttccgtggactctgaccagtgtgtaggtcg
aaattgcattaatctctaagtgtcagcctttggaaaagatatccttaagt
tagaacttgatcccaatggagcaaagctcaaataatgatgctggaaattc
tatcagataaggtagaaattggggctatttctgcagatagatgcctctag
gattgatgatcacagtggaaattcatgttcttatgcctctgtaaatttag
catgcttattttctagagtcattaattaacctggggattacaaacatgga
atgcgatgtagatagtagtgcaatgtttgctttgcaggactaattctaca
agcactctctgagttcaataatttatggaacttgatcaaatacaccatgc
tgtaaatatttttaccataaataaa

gaattcagtctttgagggatgctgtcaatgaagacctagcagcaatagag
aagtccattgacgctttagaaaaatctttgacctccctgtctgaggtagt
tttacagaacaggagaggtcttgatttgttgttcctaaaggaaggaggac
tgtgtgctgcccttaaagaagagtgctgcttctatgcagatcatacagga
atagttagagactctatgcagaaactgagagaaagattagagcaaaggaa
acgggaacgggatgctcaacgggggtggtttgagtcgtggtttgaatcac
aaccatcttggataacttctttaatttccgctgtagccggaccaatcctt
atgatatgcttagctttagttttcggcccttgtataataaatagaggaat
ggctttcatccagagtaaaattgatacagtaaaactcatggttcttcaaa
ggcaatatcaacctatagttcaggtagatgaagagttaggggacaccaat
ctctaaaattctatgattagaattagtctaaacagaaaaagaggggaatg
aaaggaaataaaactgtaattcatgtaatgtatgttaaatagcccaaaga
gttgtttctgagctttgaaacctggggctgagaacatagcagaacagacc
aggacatgcccgggcaagcccatcgcctccctagctcccacccctctgac
ctaagttaaatgttacaggctgctgatatttaaatggaccaatcatgtga
aaccgcgccaattcctcccctagccccactccttttctataaaaacccct
agcttccaagcctcgtggtcgaatccactgtctcctgttatgtgagatac
gtttcaacccggagctccgccatttaaaaacctcttgttgttacatcaag
gtgttgtgttctattcgtgattcttgggtgcacgccgaatcggagctgag
tgggggtttccccactgagttctttcactactctatagtagatcttaaga
gtgatctgagtaacagtagtagctaaatagttcagatgtcatacagagag
gcataacaagtctatatgcaaggtgcctctgtctcattaccttggcttcg
gtctcaagcctagtgacatttacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16815825_16817004
seq2: B6Ng01-317N02.b_45_1219 (reverse)

seq1  TTTATTTATAGTAAAAAAATATTACAGCATGGTTGTATTTGATTCAAG-T  49
      ||||||||| ||||||| || ||||||||||| ||||||||| ||||| |
seq2  TTTATTTATGGTAAAAATAT-TTACAGCATGG-TGTATTTGA-TCAAGTT  47

seq1  CCATAAATTTATGGACTTCAGAGAGTGCTTTGTAGATTAGGTCTTGCAAA  99
      ||||||| |||| ||  ||||||||||| ||||||| |  ||| ||||||
seq2  CCATAAA-TTATTGAACTCAGAGAGTGC-TTGTAGAATTAGTCCTGCAAA  95

seq1  GCAAACATTGCACTACTATCCTACATCGCATTCCATG-TTGTAATCCCCA  148
      ||||||||||||||||||| ||||||||||||||||| ||||||||||| 
seq2  GCAAACATTGCACTACTAT-CTACATCGCATTCCATGTTTGTAATCCCC-  143

seq1  AGGTTAATTAATGACTCTAGAAAATAAGCATGCTAAATTTACAGAGGCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATTAATGACTCTAGAAAATAAGCATGCTAAATTTACAGAGGCAT  193

seq1  AAGAACATGAATTTCCACTGTGATCATCAATCCTAGAGGCATCTATCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGAATTTCCACTGTGATCATCAATCCTAGAGGCATCTATCTGC  243

seq1  AGAAATAGCCCCAATTTCTACCTTATCTGATAGAATTTCCAGCATCATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGCCCCAATTTCTACCTTATCTGATAGAATTTCCAGCATCATTA  293

seq1  TTTGAGCTTTGCTCCATTGGGATCAAGTTCTAACTTAAGGATATCTTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTTTGCTCCATTGGGATCAAGTTCTAACTTAAGGATATCTTTTC  343

seq1  CAAAGGCTGACACTTAGAGATTAATGCAATTTCGACCTACACACTGGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGACACTTAGAGATTAATGCAATTTCGACCTACACACTGGTCA  393

seq1  GAGTCCACGGAAAGCTGCTCAGATTATTGCTGTTCAATTTGTACTTTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACGGAAAGCTGCTCAGATTATTGCTGTTCAATTTGTACTTTTCA  443

seq1  AGATATATGAGACTGTCTAACTCAAAGAGATCCAATTTGGCTACTGGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATGAGACTGTCTAACTCAAAGAGATCCAATTTGGCTACTGGATC  493

seq1  AGTCAGCAATCTTAGCTGAAAAAGTTCACTGTGCCTGATATATGGCAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAATCTTAGCTGAAAAAGTTCACTGTGCCTGATATATGGCAAGA  543

seq1  CAGTGAACCATATTAAAAAAAGATATTGAGTTACTCACAGAATCTCTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACCATATTAAAAAAAGATATTGAGTTACTCACAGAATCTCTTCT  593

seq1  AGGACCATAGATCAGCTTCAAGTTTTATACTCATAAGGGAGCCCATAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATAGATCAGCTTCAAGTTTTATACTCATAAGGGAGCCCATAATA  643

seq1  ATATTTCAAAAGTTGGATACTGATAGAGACATCAGTAGAACTGGGCACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAAAGTTGGATACTGATAGAGACATCAGTAGAACTGGGCACTG  693

seq1  AGATCCAATGTGTTGCTTGGAATGCCAAACTATGTCAGGAATCATAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATGTGTTGCTTGGAATGCCAAACTATGTCAGGAATCATAGCCA  743

seq1  CAGGTATCTAACACTCCCTATTTGAAGATGAAAATGCTAGAACTGGTATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCTAACACTCCCTATTTGAAGATGAAAATGCTAGAACTGGTATC  793

seq1  TATGAGCAAAAATGCTGTTTTAGAAGGGAGAAGCTCTCCAAATATAGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCAAAAATGCTGTTTTAGAAGGGAGAAGCTCTCCAAATATAGTCA  843

seq1  GAGGCTTCAGTATCTGGACACTAACATATCTCACAGAACAACTCTTGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCAGTATCTGGACACTAACATATCTCACAGAACAACTCTTGGAA  893

seq1  TGCCTTTGTTCTTACCTTCTCACATTAAAATTCTACCACAGACCAAAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTTCTTACCTTCTCACATTAAAATTCTACCACAGACCAAAATT  943

seq1  GGTCTCTTAATATATTACTTTAATTAAATTCCTGGAGATATACAGGATAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTAATATATTACTTTAATTAAATTCCTGGAGATATACAGGATAA  993

seq1  AAATGTTTTTGTTTAATACTTTCTAAATTTTAATTTTTTACTGGTTTATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTGTTTAATACTTTCTAAATTTTAATTTTTTACTGGTTTATA  1043

seq1  CACGCAAGAATAGGAACATGAGGGCCACTATTTTCTTTAAGTAAGTGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAAGAATAGGAACATGAGGGCCACTATTTTCTTTAAGTAAGTGTTC  1093

seq1  TCTTGAACATCGAAGTTCTGGCAATCTATTATGTACTTTTGCACCTAATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACATCGAAGTTCTGGCAATCTATTATGTACTTTTGCACCTAATA  1143

seq1  TAACCCATACAGCATTTTGTCTCAAAGAATTC  1180
      ||||||||||||||||||||||||||||||||
seq2  TAACCCATACAGCATTTTGTCTCAAAGAATTC  1175


seq1: chr3_16700456_16701082
seq2: B6Ng01-317N02.g_555_1190

seq1  GGACACCAATCTCTAAAATTCTATGATTAGAATTAGTCTAAACAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAATCTCTAAAATTCTATGATTAGAATTAGTCTAAACAGAAAAA  50

seq1  GAGGGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATGTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATGTTAAAT  100

seq1  AGCCCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAACATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAACATAGC  150

seq1  AGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAGCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAGCTCCCA  200

seq1  CCCCTCTGACCTAAGTTAAATGTTACAGGCTGCTGATATTTAAATGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGACCTAAGTTAAATGTTACAGGCTGCTGATATTTAAATGGACC  250

seq1  AATCATGTGAAACCGCGCCAATTCCTCCCCTAGCCCCACTCCTTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGAAACCGCGCCAATTCCTCCCCTAGCCCCACTCCTTTTCTAT  300

seq1  AAAAACCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTTA  350

seq1  TGTGAGATACGTTTCAACCCGGAGCTCCGCCATTTAAAAACCTCTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATACGTTTCAACCCGGAGCTCCGCCATTTAAAAACCTCTTGTTG  400

seq1  TTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGGTGCACGCCGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGGTGCACGCCGAAT  450

seq1  CGGGAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCACTACTTCTATTA  500
      | |||||||||||||||||||||||||||||||||||||||| |||||  
seq2  C-GGAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCACTAC-TCTAT--  496

seq1  AGTAGATCTTAAGAGTGATCTTGAAGTTAAACAAGTTAGTAAGCTAAATA  550
      |||||||||||||||||||||   |||  ||||   |||| |||||||| 
seq2  AGTAGATCTTAAGAGTGATCT--GAGT--AACA--GTAGT-AGCTAAAT-  538

seq1  AGTTCCAGAATGTCCATAACAGAGAAGGGGCATAACAAGTCTATATGGCA  600
      |||| ||| |||| ||| |||||||   |||||||||||||||||| |||
seq2  AGTT-CAG-ATGT-CAT-ACAGAGA---GGCATAACAAGTCTATAT-GCA  580

seq1  GGGTGGCTTCTGTTCCTCATTTACCTT-----------------------  627
       ||| || |||||  |||| |||||||                       
seq2  AGGT-GCCTCTGT--CTCA-TTACCTTGGCTTCGGTCTCAAGCCTAGTGA  626

seq1  ----------  627
                
seq2  CATTTACCTT  636


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