BAC Information

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BAC

Clone NameB6Ng01-318H12
Chromosome2 (Build37)3 (Build37)
Map Location 64,718,387 - 64,718,42338,985,224 - 38,986,324
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFign, LOC620544, LOC667291
Downstream geneGrb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318H12.bB6Ng01-318H12.g
ACCGA108349GA108350
length2991,099
definitionB6Ng01-318H12.b B6Ng01-318H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,718,387 - 64,718,423)(38,985,224 - 38,986,324)
sequence
ctgggtctgtgtggtatagctggaacgacacatctttaatcactatggct
ggaatgcagtatatacctttgtatatacctttaatccttagcaatgaagg
taaagttagtttgtggaaggaatcacccatgtttgaaagtaatgtgtaac
tgagggacagattaagtgaaagaatcagagaatgatttgacagaataagt
caaagatagcttatctctcaggagaacaatatagaaaggagagttgactt
aggaaagcacttcagagagagggagagagagagggagagagaaagagag

gaattcagtccactacaccccagcattgtgggccactgggaaataactct
gtagagagcctttctctggtattgtcaatctcagagagaaaaagaatggc
atttgggttttgttttgtttttaatgagcataagtgtatatacacctgaa
attaagagggggagacagggtcaggttctcctatgttttgtagcccaggg
ttgaactgaaaatctcactccgttgcttgactgagcctgtagctggaagc
ggagctatgagaggaaaagcaagctattgttacagtgtaaataactgtca
gcttcacagccatatttagagagccccctcctaatcattaccctctgttc
tgacatcgagtgtgcagaatactcaaaacacccagagattcaggcctttc
agtgaaatagaggcgaaagccacagatatggaaacagagacagagtgaac
tgttgatacatccctcagaccatgttaaatatacatctctcagcagtcag
ttctcactttactttcagaatcatattcttgaccccaatctctgcagcag
gtcctgctgctctatgaggcaagaaactatatccctccaggaagcctgaa
aaagtgacttaatttgatgaagaaataatctcgctgtctcccttcccatc
ctccctggccaatatcaatcttgaaatagaatactctatcctcatataaa
tctctcaaatctctctcaaatctgaatagctggggaaggcacattacgta
atctacttgtggacaactgtggctgtcctactaaacaaatacagaacaga
gaatataacagacgcctatttttatccttcttaaagttatgaaaacttgc
aagccccaccttgcatcagaagctgaatttaaaataaacatgttcccaaa
tggctcagcacaatattcccagcaggtagagaccatagcttattttaatc
gtaaaggaaaaataaaagcttgaatgacagcctgtgtgtctgattatttt
ttctctgtatgcttctgtaagtacagccaagttgtcatttctgcatcatt
agcaattgggaaaaacaactgcttagaagaaaagtcagaaagacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64718387_64718423
seq2: B6Ng01-318H12.b_310_346 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTG  37
      |||||| |||||||| |||||||||||||||||||||
seq2  CTCTCTTTCTCTCTCCCTCTCTCTCTCCCTCTCTCTG  37


seq1: chr3_38985224_38986324
seq2: B6Ng01-318H12.g_65_1163

seq1  GAATTCAGTCCACTACACCCCAGCATTGTGGGCCACTGGGAAATAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCACTACACCCCAGCATTGTGGGCCACTGGGAAATAACTCT  50

seq1  GTAGAGAGCCTTTCTCTGGTATTGTCAATCTCAGAGAGAAAAAGAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGCCTTTCTCTGGTATTGTCAATCTCAGAGAGAAAAAGAATGGC  100

seq1  ATTTGGGTTTTGTTTTGTTTTTAATGAGCATAAGTGTATATACACCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTTTTGTTTTGTTTTTAATGAGCATAAGTGTATATACACCTGAA  150

seq1  ATTAAGAGGGGGAGACAGGGTCAGGTTCTCCTATGTTTTGTAGCCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGGGGGAGACAGGGTCAGGTTCTCCTATGTTTTGTAGCCCAGGG  200

seq1  TTGAACTGAAAATCTCACTCCGTTGCTTGACTGAGCCTGTAGCTGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGAAAATCTCACTCCGTTGCTTGACTGAGCCTGTAGCTGGAAGC  250

seq1  GGAGCTATGAGAGGAAAAGCAAGCTATTGTTACAGTGTAAATAACTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATGAGAGGAAAAGCAAGCTATTGTTACAGTGTAAATAACTGTCA  300

seq1  GCTTCACAGCCATATTTAGAGAGCCCCCTCCTAATCATTACCCTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAGCCATATTTAGAGAGCCCCCTCCTAATCATTACCCTCTGTTC  350

seq1  TGACATCGAGTGTGCAGAATACTCAAAACACCCAGAGATTCAGGCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCGAGTGTGCAGAATACTCAAAACACCCAGAGATTCAGGCCTTTC  400

seq1  AGTGAAATAGAGGCGAAAGCCACAGATATGGAAACAGAGACAGAGTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAGAGGCGAAAGCCACAGATATGGAAACAGAGACAGAGTGAAC  450

seq1  TGTTGATACATCCCTCAGACCATGTTAAATATACATCTCTCAGCAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATACATCCCTCAGACCATGTTAAATATACATCTCTCAGCAGTCAG  500

seq1  TTCTCACTTTACTTTCAGAATCATATTCTTGACCCCAATCTCTGCAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTTTACTTTCAGAATCATATTCTTGACCCCAATCTCTGCAGCAG  550

seq1  GTCCTGCTGCTCTATGAGGCAAGAAACTATATCCCTCCAGGAAGCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGCTCTATGAGGCAAGAAACTATATCCCTCCAGGAAGCCTGAA  600

seq1  AAAGTGACTTAATTTGATGAAGAAATAATCTCGCTGTCTCCCTTCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTTAATTTGATGAAGAAATAATCTCGCTGTCTCCCTTCCCATC  650

seq1  CTCCCTGGCCAATATCAATCTTGAAATAGAATACTCTATCCTCATATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCCAATATCAATCTTGAAATAGAATACTCTATCCTCATATAAA  700

seq1  TCTCTCAAATCTCTCTCAAATCTGAATAGCTGGGGAAGGCACATTACGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAATCTCTCTCAAATCTGAATAGCTGGGGAAGGCACATTACGTA  750

seq1  ATCTACTTGTGGACAACTGTGGCTGTCCTACTAAACAAATACAGAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTGTGGACAACTGTGGCTGTCCTACTAAACAAATACAGAACAGA  800

seq1  GAATATAACAGACGCCTATTTTTATCCTTCTTAAAGTTATGAAAACTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAACAGACGCCTATTTTTATCCTTCTTAAAGTTATGAAAACTTGC  850

seq1  AAGCCCCACCTTGCATCAGAAGCTGAATTTAAAATAAACATGTTCCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACCTTGCATCAGAAGCTGAATTTAAAATAAACATGTTCCCAAA  900

seq1  TGGCTCAGCACAATATT-CCAGCAGGTAGAGACCATAGCTTA-TTTAATC  948
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TGGCTCAGCACAATATTCCCAGCAGGTAGAGACCATAGCTTATTTTAATC  950

seq1  GTAAAGGAAAAATAAAAGCTTGAATGACAGGCCTGTTGGTGTCTTGATTA  998
      ||||||||||||||||||||||||||||| ||||||  ||||| ||||||
seq2  GTAAAGGAAAAATAAAAGCTTGAATGACA-GCCTGT--GTGTC-TGATTA  996

seq1  TTTTTCTCCTGTATGCTTCTGTAAGTACCAGGCCAGGTTGTCATTTCTGC  1048
      |||||   ||||||||||||||||||||   |||| ||||||||||||||
seq2  TTTTTTCTCTGTATGCTTCTGTAAGTAC--AGCCAAGTTGTCATTTCTGC  1044

seq1  ATCATTTAGC-AGTGGGAAAAACAACTGCTTAGA--GAAAGTCAGAAAGA  1095
      |||| ||||| | |||||||||||||||||||||   |||||||||||||
seq2  ATCA-TTAGCAATTGGGAAAAACAACTGCTTAGAAGAAAAGTCAGAAAGA  1093

seq1  CTTTTT  1101
      | ||||
seq2  CCTTTT  1099


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