BAC Information

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BAC

Clone NameB6Ng01-319H11
Chromosome3 (Build37)
Map Location 14,674,139 - 14,827,809
singlet/doubletdoublet
Overlap geneEG545507, Car1, LOC100041785
Upstream gene0710005M24Rik, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13
Downstream geneCar3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319H11.bB6Ng01-319H11.g
ACCGA109087GA109088
length1,1361,112
definitionB6Ng01-319H11.b B6Ng01-319H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,674,139 - 14,675,277)(14,826,695 - 14,827,809)
sequence
gaattcttctaagctcagaaccccttggtccccaaatctaaaccttggaa
gaaatcactgtgccctgtaatacaactttacatgtgctgcactaagctaa
agccagggtttgtatctttctggaagaagtaattagttacttgaaaagta
ctaaaccattgctaggaatctatttcatgagtgttttctaaaaagttggt
gcaagaaccaactatacaaacagctcctattggtctataaattggaaaat
taaaatctgcagaaaaaagacgaatagggaccttaccccaacaatttttt
aaatggatgtatacatgcattctaaacacttctgcttgcagaagtcacaa
actgtaaaagaacatactttttactaggaacaaagagatatctgatgcat
ctattttgtgggcatcataataaccaagatggtgctaagaatgaaatcac
tatccacaattataaccaaacattttaagagaaccatgaaaatataattg
tcttacaatttttatattttctagccattaattgagatgtaattttgaaa
gttcaaaattggcttacaaagtgcaatgagagcagtaatcaaatcaacgt
caaagcatgactttacaaaggccatctataattagttttctttgtcaaaa
aaatcttcatagcttcatgaattaaaacttagaagcatctgttcttttga
tttccctttttcttccggaaggtcaataactggttttattgactaaagat
gagtgtatatactcatcccaaactttctctgagcttctggtgtctgtcag
tactcccaagaagtcattctgtatagaactcactattacaaaaaggaaca
gagcaagagatttaccttccacgatcttcttacaaacctgaaaggttgtc
ttaaaatttcttggacatacagtcagtgagaattcagttttgtgaaccct
ggcagtcactatttgaccatttcctctattggtaactggtggtcatctcc
atcaactcaatcgttccttccctaaaacacatctcaataaattcatgccc
tcattttggttttggagtaaaactgattgtttcagtctcgacctgtgact
gctccccatttcctcccattctaatctcactgcaac
gaattcctagattcagcccatttcttttttatattaaagatttatattaa
ggagaatgcattcacaaaagatggatcactagtttctcagaaagaaagtt
ggcacatgagattgagtcacaaggtaagcttgaggcttcttgtttgagac
ctcactgacagctcctcctgcaccttcaaaaggcaaagtcatccagtgga
aatccctggtgctatgtaactgacctggcctcagaagatgcaccatgtgt
cttaaaaccacactcacaacaaggcttctaagaaggtcacatgcacagaa
caaaaaatgaaaattggccattatactttcctacccaaattgctatattt
tcttctgattaacatttaaagagacccttgacttaaggtgttttaatttt
gagaactataaaaaatacatattttaattaaaatatagacgtattacttt
cctttttctgttttctccctcctacctcttccattaccaacttcactact
aagctgatattcttttctgaatatatgaatatatacagatacatacatgt
attatatacatatacacacaatatagaaacaacttgctgagtccattttt
gttgtttgagtctacatgctttcatagcttgaacacatatagggtagcta
cacagtaggctcatccttgggagaggtgacctcttcacctttgagagcct
gttacttagtcaaatttgaaatcttttccaattacccatggattttgaat
caagtgcgaagtcttgctaagtttacataacaaaagaatcatttttaaat
gatttttttctcccttctttccttcatttcttccttttgataccaactag
gtggtgaggtttttttttttttttttttactcagtccattaaagaattaa
aaagacataaaaatagctcatagcaaagtaaaagtagtttattggcaaca
attacaacctttgaacatccagtcagaactggacagtggtaaatccaaag
gctttactgggtcaaacatcaccccttcgtgaactccttccactcctatt
ttgacgatgaaatggggtcttcttgctctgttctggccggaacgggatac
ttatagttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_14674139_14675277
seq2: B6Ng01-319H11.b_44_1179

seq1  GAATTCTTCTAAGCTCAGAACCCCTTGGTCCCCAAATCTAAACCTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGCTCAGAACCCCTTGGTCCCCAAATCTAAACCTTGGAA  50

seq1  GAAATCACTGTGCCCTGTAATACAACTTTACATGTGCTGCACTAAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACTGTGCCCTGTAATACAACTTTACATGTGCTGCACTAAGCTAA  100

seq1  AGCCAGGGTTTGTATCTTTCTGGAAGAAGTAATTAGTTACTTGAAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGTTTGTATCTTTCTGGAAGAAGTAATTAGTTACTTGAAAAGTA  150

seq1  CTAAACCATTGCTAGGAATCTATTTCATGAGTGTTTTCTAAAAAGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCATTGCTAGGAATCTATTTCATGAGTGTTTTCTAAAAAGTTGGT  200

seq1  GCAAGAACCAACTATACAAACAGCTCCTATTGGTCTATAAATTGGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACCAACTATACAAACAGCTCCTATTGGTCTATAAATTGGAAAAT  250

seq1  TAAAATCTGCAGAAAAAAGACGAATAGGGACCTTACCCCAACAATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGCAGAAAAAAGACGAATAGGGACCTTACCCCAACAATTTTTT  300

seq1  AAATGGATGTATACATGCATTCTAAACACTTCTGCTTGCAGAAGTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGTATACATGCATTCTAAACACTTCTGCTTGCAGAAGTCACAA  350

seq1  ACTGTAAAAGAACATACTTTTTACTAGGAACAAAGAGATATCTGATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAGAACATACTTTTTACTAGGAACAAAGAGATATCTGATGCAT  400

seq1  CTATTTTGTGGGCATCATAATAACCAAGATGGTGCTAAGAATGAAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTGGGCATCATAATAACCAAGATGGTGCTAAGAATGAAATCAC  450

seq1  TATCCACAATTATAACCAAACATTTTAAGAGAACCATGAAAATATAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAATTATAACCAAACATTTTAAGAGAACCATGAAAATATAATTG  500

seq1  TCTTACAATTTTTATATTTTCTAGCCATTAATTGAGATGTAATTTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAATTTTTATATTTTCTAGCCATTAATTGAGATGTAATTTTGAAA  550

seq1  GTTCAAAATTGGCTTACAAAGTGCAATGAGAGCAGTAATCAAATCAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAATTGGCTTACAAAGTGCAATGAGAGCAGTAATCAAATCAACGT  600

seq1  CAAAGCATGACTTTACAAAGGCCATCTATAATTAGTTTTCTTTGTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATGACTTTACAAAGGCCATCTATAATTAGTTTTCTTTGTCAAAA  650

seq1  AAATCTTCATAGCTTCATGAATTAAAACTTAGAAGCATCTGTTCTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATAGCTTCATGAATTAAAACTTAGAAGCATCTGTTCTTTTGA  700

seq1  TTTCCCTTTTTCTTCCGGAAGGTCAATAACTGGTTTTATTGACTAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTTCTTCCGGAAGGTCAATAACTGGTTTTATTGACTAAAGAT  750

seq1  GAGTGTATATACTCATCCCAAACTTTCTCTGAGCTTCTGGTGTCTGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATATACTCATCCCAAACTTTCTCTGAGCTTCTGGTGTCTGTCAG  800

seq1  TACTCCCAAGAAGTCATTCTGTATAGAACTCACTATTACAAAAAGGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCAAGAAGTCATTCTGTATAGAACTCACTATTACAAAAAGGAACA  850

seq1  GAGCAAGAGATTTACCTTCCACGATCTTCTTACAAACCTG-AAGGTTGTC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGCAAGAGATTTACCTTCCACGATCTTCTTACAAACCTGAAAGGTTGTC  900

seq1  TTAAAATTTCTTGGACATACAGTCAGTGAGAATTCAGTTTTGTGAACCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTCTTGGACATACAGTCAGTGAGAATTCAGTTTTGTGAACCCT  950

seq1  GGCAGTCACTATTTGACCCATTTCCTCTATTGGTAAACTGGTGGTCATCT  999
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GGCAGTCACTATTTGA-CCATTTCCTCTATTGGT-AACTGGTGGTCATCT  998

seq1  CCATCAACTCAATCGTTCCTTCCCTAAAACACATCTCAATAAATTCATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCATCAACTCAATCGTTCCTTCCCTAAAACACATCTCAATAAATTCA-TG  1047

seq1  CCCTCATTTTGGTTTTGGAGTAAAAACTGAATTGTTTTCAGTCTCGACCT  1099
      ||||||||||||||||||||| ||||||| |||| |||||||||||||||
seq2  CCCTCATTTTGGTTTTGGAGT-AAAACTG-ATTG-TTTCAGTCTCGACCT  1094

seq1  GTGACTGCTCCCC---TTCTCCCCTTCTAATCTTCAGTGCAAC  1139
      |||||||||||||   | ||||| |||||||| ||| ||||||
seq2  GTGACTGCTCCCCATTTCCTCCCATTCTAATC-TCACTGCAAC  1136

seq1: chr3_14826695_14827809
seq2: B6Ng01-319H11.g_67_1178 (reverse)

seq1  GTTGAACCTAT-AGTATCCCTTTCTGTGCCCAAGAACAGAAGCAAG-AGA  48
      |||||| |||| |||||||| ||| | |||  ||||||| |||||| |||
seq2  GTTGAA-CTATAAGTATCCCGTTCCG-GCC--AGAACAG-AGCAAGAAGA  45

seq1  CCCAATTTTCATCGTCAAAATAGGGAGTGGAGGGAG-TCACGAAGGGGTG  97
      ||| | |||||||||||||||| |||||||| |||| |||||||||||||
seq2  CCCCA-TTTCATCGTCAAAATA-GGAGTGGAAGGAGTTCACGAAGGGGTG  93

seq1  ATGTTTGAACCCAGTAAAGCCTTTGGATTTACCACTGTCCAGTTCTGACT  147
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTG-ACCCAGTAAAGCCTTTGGATTTACCACTGTCCAGTTCTGACT  142

seq1  GGATG-TCAAAGGTTGTAATTGTTGCCAATAAACTACTTTTACTTTGCTA  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCAAAGGTTGTAATTGTTGCCAATAAACTACTTTTACTTTGCTA  192

seq1  TGAGCTATTTTTATGTC-TTTTAATTCTTTAATGGACTGAGTAAAAAAAA  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGCTATTTTTATGTCTTTTTAATTCTTTAATGGACTGAGTAAAAAAAA  242

seq1  AAAAAAAAAAACCTCACCACCTAGTTGGTATCAAAAGGAAGAAATGAAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCTCACCACCTAGTTGGTATCAAAAGGAAGAAATGAAGG  292

seq1  AAAGAAGGGAGAAAAAAATCATTTAAAAATGATTCTTTTGTTATGTAAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGAGAAAAAAATCATTTAAAAATGATTCTTTTGTTATGTAAAC  342

seq1  TTAGCAAGACTTCGCACTTGATTCAAAATCCATGGGTAATTGGAAAAGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGACTTCGCACTTGATTCAAAATCCATGGGTAATTGGAAAAGAT  392

seq1  TTCAAATTTGACTAAGTAACAGGCTCTCAAAGGTGAAGAGGTCACCTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTGACTAAGTAACAGGCTCTCAAAGGTGAAGAGGTCACCTCTC  442

seq1  CCAAGGATGAGCCTACTGTGTAGCTACCCTATATGTGTTCAAGCTATGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGAGCCTACTGTGTAGCTACCCTATATGTGTTCAAGCTATGAA  492

seq1  AGCATGTAGACTCAAACAACAAAAATGGACTCAGCAAGTTGTTTCTATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAGACTCAAACAACAAAAATGGACTCAGCAAGTTGTTTCTATAT  542

seq1  TGTGTGTATATGTATATAATACATGTATGTATCTGTATATATTCATATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATGTATATAATACATGTATGTATCTGTATATATTCATATAT  592

seq1  TCAGAAAAGAATATCAGCTTAGTAGTGAAGTTGGTAATGGAAGAGGTAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGAATATCAGCTTAGTAGTGAAGTTGGTAATGGAAGAGGTAGG  642

seq1  AGGGAGAAAACAGAAAAAGGAAAGTAATACGTCTATATTTTAATTAAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAACAGAAAAAGGAAAGTAATACGTCTATATTTTAATTAAAAT  692

seq1  ATGTATTTTTTATAGTTCTCAAAATTAAAACACCTTAAGTCAAGGGTCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTTTATAGTTCTCAAAATTAAAACACCTTAAGTCAAGGGTCTC  742

seq1  TTTAAATGTTAATCAGAAGAAAATATAGCAATTTGGGTAGGAAAGTATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTAATCAGAAGAAAATATAGCAATTTGGGTAGGAAAGTATAA  792

seq1  TGGCCAATTTTCATTTTTTGTTCTGTGCATGTGACCTTCTTAGAAGCCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATTTTCATTTTTTGTTCTGTGCATGTGACCTTCTTAGAAGCCTT  842

seq1  GTTGTGAGTGTGGTTTTAAGACACATGGTGCATCTTCTGAGGCCAGGTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGTGTGGTTTTAAGACACATGGTGCATCTTCTGAGGCCAGGTCA  892

seq1  GTTACATAGCACCAGGGATTTCCACTGGATGACTTTGCCTTTTGAAGGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAGCACCAGGGATTTCCACTGGATGACTTTGCCTTTTGAAGGTG  942

seq1  CAGGAGGAGCTGTCAGTGAGGTCTCAAACAAGAAGCCTCAAGCTTACCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGCTGTCAGTGAGGTCTCAAACAAGAAGCCTCAAGCTTACCTT  992

seq1  GTGACTCAATCTCATGTGCCAACTTTCTTTCTGAGAAACTAGTGATCCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAATCTCATGTGCCAACTTTCTTTCTGAGAAACTAGTGATCCAT  1042

seq1  CTTTTGTGAATGCATTCTCCTTAATATAAATCTTTAATATAAAAAAGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGAATGCATTCTCCTTAATATAAATCTTTAATATAAAAAAGAAA  1092

seq1  TGGGCTGAATCTAGGAATTC  1115
      ||||||||||||||||||||
seq2  TGGGCTGAATCTAGGAATTC  1112