BAC Information

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BAC

Clone NameB6Ng01-319J18
Chromosome3 (Build37)
Map Location 138,157,155 - 138,277,771
singlet/doubletdoublet
Overlap geneEG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Upstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1
Downstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319J18.bB6Ng01-319J18.g
ACCGA109195GA109196
length2511,078
definitionB6Ng01-319J18.b B6Ng01-319J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,157,155 - 138,157,405)(138,276,761 - 138,277,771)
sequence
actctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcc
tcccaagtgctgggattaaaggcgtgtgccaccattgcccggctacctca
ctcttattaataaaagaatttagaaattgactgagagggaaacttgagaa
caactttattagagtttagagaaaaacaaggcaggaaagctgtaaatgtg
ggcagctgctagaagagaaaggagacgggggtgcggggtttgaggggggg
g
gaattctcacctccagcacctcgggacgagaccagtttttgaagacaggg
tctttaaagagttcactaggataggcacgggcttatggtgtacaaatggg
ccaaatgggccagcgtgcccattaaagaagcagtcgggacaagatacata
gaagggagaaatactgtgtgaacacaggaaaagacagccgtcaagagcga
aggcgagaaatcagaagccactaaccctgccagcatcttaatgttggact
tctggcctctggaccagtgggtctccagcttcctgatactgtggcccttt
aatacagttcctcatgttgtggtgaccccccaaccatacattatttcatt
gctacttcatgactataattttgctacttgctactgttatgaattgtaat
gtaaatatcagatatgcaggatagtcttgggtgacctctgtgaaggtcat
ctgactacagaaggagttgcagccccgacccacagattctagcctgtgag
aagatatatttctgtgacttaagccccaatatgtagtactctgtcatgac
tgctgtaatgaattaatgaattgcaagcactgtgctgacaatttggttgt
cagaatgtctcttattactgttgttattactaaaacgttttttttacaca
atagatactggtagggccagattcaaatgagcactgtagttgcctggaca
aaccaaatgcaaccaccatcaatgcacaagctcctggtacagggcactaa
atactgtgcttagccctagagggaagccctagggtaggaacctgaaagat
cctccaagaaatcacattctgattggttccaagcttgtggcaccattttc
agggggcaggcccttgggagtatattatcctggcttgctctgtcactcta
cagtgatatagacacagaggagccaataggaaacagcaccttaatgcaag
ccaaggtgttgggagggcgggggacagagggcagccagctgcgcatcctt
caaggctatgagaagaagactggactggcacagtgccagctgactcagct
gtcttcctcttatctcctgcagagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138157155_138157405
seq2: B6Ng01-319J18.b_53_303

seq1  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCC  50

seq1  TCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATTGCCCGGCTACCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATTGCCCGGCTACCTCA  100

seq1  CTCTTATTAATAAAAGAATTTAGAAATTGACTGAGAGGGAAACTTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTAATAAAAGAATTTAGAAATTGACTGAGAGGGAAACTTGAGAA  150

seq1  CAACTTTATTAGAGTTTAGAGAAAAACAAGGCAGGAAAGCTGTAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTATTAGAGTTTAGAGAAAAACAAGGCAGGAAAGCTGTAAATGTG  200

seq1  GGCAGCTGCTAGAAGAGAAAGGAGACGGGGGTGCGGGGTTTGAGGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCTAGAAGAGAAAGGAGACGGGGGTGCGGGGTTTGAGGGGGGG  250

seq1  G  251
      |
seq2  G  251

seq1: chr3_138276761_138277771
seq2: B6Ng01-319J18.g_135_1144 (reverse)

seq1  CAGACTCTGCAGGAGATAGGA-GAAGACAGCCTGAAGTCAGCTGGCACTG  49
      |||||||||||||||||| || |||||||| ||| |||||||||||||||
seq2  CAGACTCTGCAGGAGATAAGAGGAAGACAG-CTG-AGTCAGCTGGCACTG  48

seq1  TGCCAGTCCAGTC-TCTTCTCATAGCCCTGAAGGATGCGCAGCTGGCTGC  98
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TGCCAGTCCAGTCTTCTTCTCATAGCCTTGAAGGATGCGCAGCTGGCTGC  98

seq1  CCTCTGTCCCCCGCCCTCCCAACACCTTGGCTTTGCATTAAGGTGCTGTT  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTGTCCCCCGCCCTCCCAACACCTTGGC-TTGCATTAAGGTGCTGTT  147

seq1  TCCTATTGGCTCCTCTGTGTCTATATCACTGTAGAGTGACAGAGCAAGCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGGCTCCTCTGTGTCTATATCACTGTAGAGTGACAGAGCAAGCC  197

seq1  AGGATAATATACTCCCAAGGGCCTGCCCCCTGAAAATGGTGCCACAAGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATATACTCCCAAGGGCCTGCCCCCTGAAAATGGTGCCACAAGCT  247

seq1  TGGAACCAATCAGAATGTGATTTCTTGGAGGATCTTTCAGGTTCCTACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAATCAGAATGTGATTTCTTGGAGGATCTTTCAGGTTCCTACCC  297

seq1  TAGGGCTTCCCTCTAGGGCTAAGCACAGTATTTAGTGCCCTGTACCAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTCCCTCTAGGGCTAAGCACAGTATTTAGTGCCCTGTACCAGGA  347

seq1  GCTTGTGCATTGATGGTGGTTGCATTTGGTTTGTCCAGGCAACTACAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCATTGATGGTGGTTGCATTTGGTTTGTCCAGGCAACTACAGTG  397

seq1  CTCATTTGAATCTGGCCCTACCAGTATCTATTGTGTAAAAAAAACGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGAATCTGGCCCTACCAGTATCTATTGTGTAAAAAAAACGTTTT  447

seq1  AGTAATAACAACAGTAATAAGAGACATTCTGACAACCAAATTGTCAGCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAACAACAGTAATAAGAGACATTCTGACAACCAAATTGTCAGCAC  497

seq1  AGTGCTTGCAATTCATTAATTCATTACAGCAGTCATGACAGAGTACTACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCAATTCATTAATTCATTACAGCAGTCATGACAGAGTACTACA  547

seq1  TATTGGGGCTTAAGTCACAGAAATATATCTTCTCACAGGCTAGAATCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGGCTTAAGTCACAGAAATATATCTTCTCACAGGCTAGAATCTGT  597

seq1  GGGTCGGGGCTGCAACTCCTTCTGTAGTCAGATGACCTTCACAGAGGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGGGCTGCAACTCCTTCTGTAGTCAGATGACCTTCACAGAGGTCA  647

seq1  CCCAAGACTATCCTGCATATCTGATATTTACATTACAATTCATAACAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACTATCCTGCATATCTGATATTTACATTACAATTCATAACAGTA  697

seq1  GCAAGTAGCAAAATTATAGTCATGAAGTAGCAATGAAATAATGTATGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGCAAAATTATAGTCATGAAGTAGCAATGAAATAATGTATGGTT  747

seq1  GGGGGGTCACCACAACATGAGGAACTGTATTAAAGGGCCACAGTATCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCACCACAACATGAGGAACTGTATTAAAGGGCCACAGTATCAGG  797

seq1  AAGCTGGAGACCCACTGGTCCAGAGGCCAGAAGTCCAACATTAAGATGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGACCCACTGGTCCAGAGGCCAGAAGTCCAACATTAAGATGCT  847

seq1  GGCAGGGTTAGTGGCTTCTGATTTCTCGCCTTCGCTCTTGACGGCTGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTTAGTGGCTTCTGATTTCTCGCCTTCGCTCTTGACGGCTGTCT  897

seq1  TTTCCTGTGTTCACACAGTATTTCTCCCTTCTATGTATCTTGTCCCGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTGTTCACACAGTATTTCTCCCTTCTATGTATCTTGTCCCGACT  947

seq1  GCTTCTTTAATGGGCACGCTGGCCCATTTGGCCCATTTGTACACCATAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTAATGGGCACGCTGGCCCATTTGGCCCATTTGTACACCATAAG  997

seq1  CCCGTGCCTATCC  1011
      |||||||||||||
seq2  CCCGTGCCTATCC  1010