BAC Information

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BAC

Clone NameB6Ng01-320N16
Chromosome3 (Build37)
Map Location 81,854,682 - 82,020,586
singlet/doubletdoublet
Overlap geneGucy1b3, Gucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N16.bB6Ng01-320N16.g
ACCGA110116GA110117
length1,099959
definitionB6Ng01-320N16.b B6Ng01-320N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,019,514 - 82,020,586)(81,854,682 - 81,855,635)
sequence
gaattctcaatacaaatacaaaatgagacttcaagttgtcctttcactta
ggatttcaattctaaatgaagctcataatttactgtagaaatctaaaaag
agagaggggtaaagacaaagagaaagaaacaggaggcacagggaggggga
agagcaagctaaaatgggaaatggactctcacttggagcccttgagctct
ttgagcaaagaatctcaaacttgtatgtaatactatctggacaccagttt
gtctgtcagtggaggacatcagagggtatggagacaagcacctgaaaggt
gaggtaaacaccttgttttgtttgtgacaggatttccaagataaatggaa
gcacaaatggttggtagagcatgcaaagagctacagctgtgttccaggca
ggctttgattacaaagaaaagttcacagaagaacccatttcgtgactact
cctctgaatagcagcgagaatacattcaaagccttgtgagtaatttgtcc
tttctttcccagtgtattcatttcctcgagatacttgaggtcttaatttc
taaaaataatttttggaaacaccaaactaaatgatctgaaaattaatttc
aatgtctttgttttacgtcttcgatattggacaattatttatttgactat
tacttgaattatcctgtgtcccatgtgcacaggacacctcaatgaataat
gttttgtgtctcatgctttttatactagttcaatgcagatgcacataaag
tcagtatgatgtatgtgtaaattaaacactgtgttacataaaggtgcaca
agttatgaataggagaaaggcacagaaaagtcagaggatatgagagtaga
atggggtggacagtttgcttcttatattggagaggagagagggacagtcc
atgggtatactacttcacggatgtgggggacgaattctagctgcatttgg
aagaaatgagggagcaaatatcttttgtagatctacccctgtgctatgca
taggctagccaggtcccctaccccgctatatattcgcgtaacagatgcct
atagcaactgaatggacttggagaggagaccacgcgatgatatgattat
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaca
aaagcaaaaacaacaaaaaagtcaaaatgtaaactggaatattttatttg
gaaagaaaacttatcagagcctttaaaattatttaaactgaaaatatcaa
atacaaataatgaaaaaaatttaaaaattatttaaatagaaatcactttt
aaaattgtagtattagccctgtggaagtggtgcacacatttaatcgcagc
acttgcagatgcaggagaatctctggagttcaaagcctgcctggtgttcc
agcacagtcatggctacactaaaaactctttctcaaaacaaaacaaaaag
caaacaaaataccccccaaaacagtatgcatttcttacctcatcttctca
aaagccatatcttcaataacaataaaaataaataaaatgcacttacacat
atttcacatatttctgtcttttacaatgcatgttaaaaacagaatccttc
cagataataccaaatttaacaacggatctatatttagtgcagccagttat
tcaaagaagaatctttcacttttaatgtatttctcttccttctgaagttt
tgttctgtttttctgtttaaaataaaattaagtcatattttagtggtagg
ttgtagaaattgagtttagatgtttctttttgagttttcaaaagttaaaa
taaagtgtcaagtgcattttttctacaaaatataaataatttagggaagt
attaggactttacagctgttcaggaaaatcctagtatttcccaaaatagc
cccttgtacaaacatttgagaattttgaaattggatctgctgtgaatgcc
aggatgctgctggtggggctgtgttttataagcccaaatcagagctaagc
agagctggagacagtcctcctgcaggctgtgtgctgtgttggggggaagg
gttaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82019514_82020586
seq2: B6Ng01-320N16.b_48_1146 (reverse)

seq1  ATAATCATATCATC-AGT-GTCTCC-CTCC-AGTCCA-TCAG-TGCTATA  44
      ||||||||||||||  || |||||| |||| |||||| |||| |||||||
seq2  ATAATCATATCATCGCGTGGTCTCCTCTCCAAGTCCATTCAGTTGCTATA  50

seq1  -GCATCTGTTACCCGATAATATA----CGTGTGGGGCCTTGCTAGCCTTT  89
       ||||||||||| |||  |||||     ||  ||| ||| |||||||| |
seq2  GGCATCTGTTACGCGAATATATAGCGGGGTAGGGGACCTGGCTAGCCTAT  100

seq1  CC--TGCACTGGGGT-GATCTTC--AAGGTATTTGCTTCCCTCATTTCTT  134
       |   |||| ||||| ||||| |  ||| ||||||| |||||||||||||
seq2  GCATAGCACAGGGGTAGATCTACAAAAGATATTTGC-TCCCTCATTTCTT  149

seq1  CC-AATGCACTTAG-ATTCGTCCCCCACATCC-TG-AGTAGTCTA-CCAT  179
      || ||||||  ||| ||||||||||||||||| || |||||| || ||||
seq2  CCAAATGCAGCTAGAATTCGTCCCCCACATCCGTGAAGTAGTATACCCAT  199

seq1  -GACTGT-CCTCTCTCCTCTCCAATATAAGAAGC-AACTGTCCACCCCAT  226
       |||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  GGACTGTCCCTCTCTCCTCTCCAATATAAGAAGCAAACTGTCCACCCCAT  249

seq1  TCTACTCTCATATCCTCTGACTTTTCT-TGCCTTTCTCCTATTCATAACT  275
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTACTCTCATATCCTCTGACTTTTCTGTGCCTTTCTCCTATTCATAACT  299

seq1  TGTGCACCTTTATGTAACACAGTGTTTAATTTACACATACATCATACTGA  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCTTTATGTAACACAGTGTTTAATTTACACATACATCATACTGA  349

seq1  CTTTATGTGCATCTGCATTGAACTAGTAT-AAAAGCATGAGACAC-AAAC  373
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  CTTTATGTGCATCTGCATTGAACTAGTATAAAAAGCATGAGACACAAAAC  399

seq1  ATTATTCATTGAGGTGTCCTGTGCACATGGGACACAGGATAATTCAAGTA  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCATTGAGGTGTCCTGTGCACATGGGACACAGGATAATTCAAGTA  449

seq1  ATAGTCAAATAAATAATTGTCCAATATCGAAGACGTAAAACAAAGACATT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAATAAATAATTGTCCAATATCGAAGACGTAAAACAAAGACATT  499

seq1  GAAATTAATTTTCAGATCATTTAGTTTGGTGTTTCCAAAAATTATTTTTA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTTTCAGATCATTTAGTTTGGTGTTTCCAAAAATTATTTTTA  549

seq1  GAAATTAAGACCTCAAGTATCTCGAGGAAATGAATACACTGGGAAAGAAA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGACCTCAAGTATCTCGAGGAAATGAATACACTGGGAAAGAAA  599

seq1  GGACAAATTACTCACAAGGCTTTGAATGTATTCTCGCTGCTATTCAGAGG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATTACTCACAAGGCTTTGAATGTATTCTCGCTGCTATTCAGAGG  649

seq1  AGTAGTCACGAAATGGGTTCTTCTGTGAACTTTTCTTTGTAATCAAAGCC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCACGAAATGGGTTCTTCTGTGAACTTTTCTTTGTAATCAAAGCC  699

seq1  TGCCTGGAACACAGCTGTAGCTCTTTGCATGCTCTACCAACCATTTGTGC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAACACAGCTGTAGCTCTTTGCATGCTCTACCAACCATTTGTGC  749

seq1  TTCCATTTATCTTGGAAATCCTGTCACAAACAAAACAAGGTGTTTACCTC  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTATCTTGGAAATCCTGTCACAAACAAAACAAGGTGTTTACCTC  799

seq1  ACCTTTCAGGTGCTTGTCTCCATACCCTCTGATGTCCTCCACTGACAGAC  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCAGGTGCTTGTCTCCATACCCTCTGATGTCCTCCACTGACAGAC  849

seq1  AAACTGGTGTCCAGATAGTATTACATACAAGTTTGAGATTCTTTGCTCAA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTGTCCAGATAGTATTACATACAAGTTTGAGATTCTTTGCTCAA  899

seq1  AGAGCTCAAGGGCTCCAAGTGAGAGTCCATTTCCCATTTTAGCTTGCTCT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAAGGGCTCCAAGTGAGAGTCCATTTCCCATTTTAGCTTGCTCT  949

seq1  TCCCCCTCCCTGTGCCTCCTGTTTCTTTCTCTTTGTCTTTACCCCTCTCT  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCTGTGCCTCCTGTTTCTTTCTCTTTGTCTTTACCCCTCTCT  999

seq1  CTTTTTAGATTTCTACAGTAAATTATGAGCTTCATTTAGAATTGAAATCC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGATTTCTACAGTAAATTATGAGCTTCATTTAGAATTGAAATCC  1049

seq1  TAAGTGAAAGGACAACTTGAAGTCTCATTTTGTATTTGTATTGAGAATTC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAGGACAACTTGAAGTCTCATTTTGTATTTGTATTGAGAATTC  1099

seq1: chr3_81854682_81855635
seq2: B6Ng01-320N16.g_69_1027

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAAGCAAAAACAACAAAAAAGTCAAAATGTAAACTGGAATATTTTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAACAACAAAAAAGTCAAAATGTAAACTGGAATATTTTATTTG  100

seq1  GAAAGAAAACTTATCAGAGCCTTTAAAATTATTTAAACTGAAAATATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAACTTATCAGAGCCTTTAAAATTATTTAAACTGAAAATATCAA  150

seq1  ATACAAATAATGAAAAAAATTTAAAAATTATTTAAATAGAAATCACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATAATGAAAAAAATTTAAAAATTATTTAAATAGAAATCACTTTT  200

seq1  AAAATTGTAGTATTAGCCCTGTGGAAGTGGTGCACACATTTAATCGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAGTATTAGCCCTGTGGAAGTGGTGCACACATTTAATCGCAGC  250

seq1  ACTTGCAGATGCAGGAGAATCTCTGGAGTTCAAAGCCTGCCTGGTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGATGCAGGAGAATCTCTGGAGTTCAAAGCCTGCCTGGTGTTCC  300

seq1  AGCACAGTCATGGCTACACTAAAAACTCTTTCTCAAAACAAAACAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTCATGGCTACACTAAAAACTCTTTCTCAAAACAAAACAAAAAG  350

seq1  CAAACAAAATACCCCCCAAAACAGTATGCATTTCTTACCTCATCTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAATACCCCCCAAAACAGTATGCATTTCTTACCTCATCTTCTCA  400

seq1  AAAGCCATATCTTCAATAACAATAAAAATAAATAAAATGCACTTACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATATCTTCAATAACAATAAAAATAAATAAAATGCACTTACACAT  450

seq1  ATTTCACATATTTCTGTCTTTTACAATGCATGTTAAAAACAGAATCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATATTTCTGTCTTTTACAATGCATGTTAAAAACAGAATCCTTC  500

seq1  CAGATAATACCAAATTTAACAACGGATCTATATTTAGTGCAGCCAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATACCAAATTTAACAACGGATCTATATTTAGTGCAGCCAGTTAT  550

seq1  TCAAAGAAGAATCTTTCACTTTTAATGTATTTCTCTTCCTTCTGAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGAATCTTTCACTTTTAATGTATTTCTCTTCCTTCTGAAGTTT  600

seq1  TGTTCTGTTTTTCTGTTTAAAATAAAATTAAGTCATATTTTAGTGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTTTTCTGTTTAAAATAAAATTAAGTCATATTTTAGTGGTAGG  650

seq1  TTGTAGAAATTGAGTTTAGATGTTTCTTTTTGAG-TTTCAAAAGTTAAAA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTAGAAATTGAGTTTAGATGTTTCTTTTTGAGTTTTCAAAAGTTAAAA  700

seq1  TAAAGTGTCAAGTGCATTTTTTCTACAAAATATAAATAATTTAGGGAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTCAAGTGCATTTTTTCTACAAAATATAAATAATTTAGGGAAGT  750

seq1  ATTAGGACTTTACAGCTGTTCAGGAAAATCCTAGTATTTCCCAAAATAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGACTTTACAGCTGTTCAGGAAAATCCTAGTATTTCCCAAAATAGC  800

seq1  CCCTTGTACAAACATTTGAGAA-TTTGAAATTGGATCTGCTGTGAATGCC  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTTGTACAAACATTTGAGAATTTTGAAATTGGATCTGCTGTGAATGCC  850

seq1  AGGATGCTGCTGGT-GGGCTGTGTTTTATAAGCCCAAATCAGAGCTAAGC  897
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGATGCTGCTGGTGGGGCTGTGTTTTATAAGCCCAAATCAGAGCTAAGC  900

seq1  AGAGCTGGAGACAGTCCTCCTGCAGGCTGTGTGCTGTGTTGGGGG--AGG  945
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AGAGCTGGAGACAGTCCTCCTGCAGGCTGTGTGCTGTGTTGGGGGGAAGG  950

seq1  GTTAGGAAT  954
      |||||||||
seq2  GTTAGGAAT  959