BAC Information

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BAC

Clone NameB6Ng01-321H22
Chromosome3 (Build37)
Map Location 64,176,893 - 64,178,090
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031
Downstream geneEG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321H22.bB6Ng01-321H22.g
ACCGA110583GA110584
length1,1681,123
definitionB6Ng01-321H22.b B6Ng01-321H22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgcctctgttctcttagacacctacattcctgtctatgtaca
ccccatatgtacataaattaaaaaaaattattggtgccatgcaaatctgg
aaggatcttagcatcttgacataaaaggtaatctgtcaaattctttctat
ttcatttccaaaataaacaaattgctagaaactaccatagcacactccca
ttgacatcctaggatgttggtctatctattcctatgcacctgcaaatttc
actaagttcttaggtctcagaccagaactggccagggacatattgcttct
acaccttaaactatacttctgtttccaattagggctgtatttacatggtt
agggtactgaatacttcgagatatttctttctgtcagaaaaagataattc
caaaggcactttcatttatttaaaaaaacagtcaagttccacattacatt
tactataataattataatttgttctaaaactccatttgtaaggagtcata
cagtttgtcacaggtagattatatctatagaggaaataggaaagggatca
atagccttgtttgatatttaatttcagctttctaggacatgtgatctgtg
ttaaacatctaatgccaccatgtggcaagaaattgccatatatgtggaaa
ttagtaaaaatgtccatatttcaatgaaaatacttgaaagaacaaacatt
gggacatttatgaccactggctgtgatattctactgagtgataaagagta
atcatttctttttttttttttacttttttaatttattaggtattttattc
atttacatttccaatgctatcccaaaagtccaccatacccccacccatcc
tctacacacccactcccaattcttggccctggtgttcccctgtactgaga
catataaagtttgcaagaccagtgggcgtcttttccaatgatggccaact
aggccatctctgctacatatgcagctagaggcacgagctctgggagtact
gggtagtcatgttattgtccacctatacgtgcagaccccttagtcctagg
ctgaagaaccagatgtccctcacagaggatgatacagaaaaatgtgtaca
ttactatgaatactactcagcctataagatgatatgatctagcaatggat
gaacctgtgagggcatca
gaattctatggaccgtatcttggttattttgtactttttggggggggggt
atcgactaatagtgagtacattccatgactttccttttgggtctgagtta
ccctcattcaggatgatattttctagttccatccatttgccttcaaaact
caggatgtcatcattcttaatagctgagtagtattccactgtgtaaatga
accacattttctgtatccatgtttctgttgtggggcatctgggctatttc
gagttcctggctatatcaaacaaggctgctatgaacatagtggaacatgt
gcccctgtggcatggtgaggcatcttttgggtatattcccaagagtggta
tttctgggtgttgggatagccctgggactaattatatttgatattaatac
tgttctcctgtgagaggctttgaacaaggaatgagtcagcactcaggtga
cttcctgtaaacctgcttcctaccttaatttctcaaacaaaggaaagctg
acgattgggcagataaaaaggaaggtgaagtagaaagtgtggagaaggaa
gaaggagaaaatggaccagggagaggacacagaggaagaggaggaggaag
aagaaaagcagagcagaagcgcatggcctggagaaactgcagttctaagg
ggtctcatagatgtggaagatactagtttagcagtagatttgtccattct
aggtgcacagcatgtaatcatattaactgagtcctgttttcattactggg
ggcatacttgggatggagagatttactgcaacacctgggtcttcaggtag
ttctattttccaattttctgaacaaactccagattgatttccagagtaat
tgtaccagtttgccatcccaccagcaactgtatagagtttctctttgcac
acatccttgctgtcacctgagatttttatctttgttgtgcagatggtgta
agaaggagtctcaggttgttttgattgcatttctcttgaatcacaaagga
ctttgaacaatttcttaaggtgttttttcagcgatcaaggaattccctca
attgggaattcccaattagatctaactccaattcttcttgattggctttt
taggcggaggaagtggcggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64176893_64178090
seq2: B6Ng01-321H22.b_46_1213

seq1  GAATTCAATGCCTCTGTTCTCTTAGACACCTACATTCCTGTCTATGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCTCTGTTCTCTTAGACACCTACATTCCTGTCTATGTACA  50

seq1  CCCCATATGTACATAAATTAAAAAAAATTATTGGTGCCATGCAAATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATGTACATAAATTAAAAAAAATTATTGGTGCCATGCAAATCTGG  100

seq1  AAGGATCTTAGCATCTTGACATAAAAGGTAATCTGTCAAATTCTTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTAGCATCTTGACATAAAAGGTAATCTGTCAAATTCTTTCTAT  150

seq1  TTCATTTCCAAAATAAACAAATTGCTAGAAACTACCATAGCACACTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCAAAATAAACAAATTGCTAGAAACTACCATAGCACACTCCCA  200

seq1  TTGACATCCTAGGATGTTGGTCTATCTATTCCTATGCACCTGCAAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCTAGGATGTTGGTCTATCTATTCCTATGCACCTGCAAATTTC  250

seq1  ACTAAGTTCTTAGGTCTCAGACCAGAACTGGCCAGGGACATATTGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTCTTAGGTCTCAGACCAGAACTGGCCAGGGACATATTGCTTCT  300

seq1  ACACCTTAAACTATACTTCTGTTTCCAATTAGGGCTGTATTTACATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTAAACTATACTTCTGTTTCCAATTAGGGCTGTATTTACATGGTT  350

seq1  AGGGTACTGAATACTTCGAGATATTTCTTTCTGTCAGAAAAAGATAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTGAATACTTCGAGATATTTCTTTCTGTCAGAAAAAGATAATTC  400

seq1  CAAAGGCACTTTCATTTATTTAAAAAAACAGTCAAGTTCCACATTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCACTTTCATTTATTTAAAAAAACAGTCAAGTTCCACATTACATT  450

seq1  TACTATAATAATTATAATTTGTTCTAAAACTCCATTTGTAAGGAGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATAATTATAATTTGTTCTAAAACTCCATTTGTAAGGAGTCATA  500

seq1  CAGTTTGTCACAGGTAGATTATATCTATAGAGGAAATAGGAAAGGGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTCACAGGTAGATTATATCTATAGAGGAAATAGGAAAGGGATCA  550

seq1  ATAGCCTTGTTTGATATTTAATTTCAGCTTTCTAGGACATGTGATCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTGTTTGATATTTAATTTCAGCTTTCTAGGACATGTGATCTGTG  600

seq1  TTAAACATCTAATGCCACCATGTGGCAAGAAATTGCCATATATGTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATCTAATGCCACCATGTGGCAAGAAATTGCCATATATGTGGAAA  650

seq1  TTAGTAAAAATGTCCATATTTCAATGAAAATACTTGAAAGAACAAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAAATGTCCATATTTCAATGAAAATACTTGAAAGAACAAACATT  700

seq1  GGGACATTTATGACCACTGGCTGTGATATTCTACTGAGTGATAAAGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTATGACCACTGGCTGTGATATTCTACTGAGTGATAAAGAGTA  750

seq1  ATCATTTCTTTTTTTTTTTTTACTTTTTTAATTTATTAGGTATTTTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTTTTTTTTTTTTTACTTTTTTAATTTATTAGGTATTTTATTC  800

seq1  ATTTACATTTCCAATGCTATCCCAAAAGTCCACCATACCCCCACCCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCCAATGCTATCCCAAAAGTCCACCATACCCCCACCCATCC  850

seq1  TCTACACACCCACTCCCAATTCTTGGCCCTGGTGTTCCCCTGTACTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACACCCACTCCCAATTCTTGGCCCTGGTGTTCCCCTGTACTGAGA  900

seq1  CATATAAAGTTTGCAAGACCAGTGGGCGTCTTTTCCAATGATGGCCAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGTTTGCAAGACCAGTGGGCGTCTTTTCCAATGATGGCCAACT  950

seq1  AGGCCATCTTCTGCTACATATGCAGCTAGAGGCACGAGCTCTGGGGAGTA  1000
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AGGCCATC-TCTGCTACATATGCAGCTAGAGGCACGAGCTCT-GGGAGTA  998

seq1  CTGGTTAGTTCATGTTATTGTTCCACCTATACGGTTGCAGACCCCTTTAA  1050
      |||| ||| ||||||||||| ||||||||||||  ||||||||||||  |
seq2  CTGGGTAG-TCATGTTATTG-TCCACCTATACG--TGCAGACCCCTT--A  1042

seq1  GTCCTAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA  1100
      |||||| ||||  ||||| ||||||||||||| ||||||||   ||||||
seq2  GTCCTAGGCTG--AAGAA-CCAGATGTCCCTC-ACAGAGGA--TGATACA  1086

seq1  G-AAAATGTGGTACATTTACATAATGGAATACTACTCAG-CTATTAAAAA  1148
      | ||||||| |||||||   ||    ||||||||||||| ||||    ||
seq2  GAAAAATGT-GTACATTACTAT----GAATACTACTCAGCCTAT----AA  1127

seq1  GAATGAATTTATGAAATTCCTAGGCAAGTGGATGGACCTG-GAGGGCATC  1197
      | ||||   |||||     ||| |||| |||||| ||||| |||||||||
seq2  G-ATGA---TATGA----TCTA-GCAA-TGGATGAACCTGTGAGGGCATC  1167

seq1  A  1198
      |
seq2  A  1168