BAC Information

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BAC

Clone NameB6Ng01-323A03
Chromosome3 (Build37)
Map Location 66,887,229 - 67,078,055
singlet/doubletdoublet
Overlap geneRsrc1
Upstream geneVeph1, Tpi-rs2, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A03.bB6Ng01-323A03.g
ACCGA111700GA111701
length1,1621,131
definitionB6Ng01-323A03.b B6Ng01-323A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,076,897 - 67,078,055)(66,887,229 - 66,888,375)
sequence
gaattctaagaattagacataattcatatgcagccagtaagtactgaaga
agggagttaatacttaattggaataaaccaaattaaaatgatctgcaaat
ggaaagtagtttttacattaattttgttttatggatatgagtacattgcc
tgcctgtatgtctatgtaccatgtgtgtgcctggtgttcacagagatcag
aagagagcactgaatcccctggatctagggttacagattaatggtagcca
tcatgtacatatgtgctggaaaccaaatcaggactctctgcaggagcaaa
agtgttcttaatcacttcgccatctccagtccttggcaagtttttgttgt
tgttttttaaagcaaaagattgggtcattgtggtaaaggagattaaaaat
tagaatttaaaaagccatgttctttgccagttaaacatatcttattaagc
aaatgtgaagtgtgagatatcccaactgaaactgtgaataacacaacttc
tctcctcccacaatgtgttaagagaaagaacaaatacaaaagactatcac
aagggcatggtaagaattttttgtttttatcccaccaagacaatattaaa
tttcaaactagttttagtagatttggtcttcactcatccctttaacaaca
gcacacagcacaggttcatgacatgcatgggatttgatgaatctgccacg
aagtcaagaggacacttaccaacccagacttagatgagcacaaagcctta
ttgacctaatgactaaagctctaatggctgacgtttcagaggggatgttg
ttggagatcaaagtcagggcctgctcggtgtgctttccgctactgagcca
ccctagcataatattcactggaagaggaaggtgcagcgctggtaccaatt
catcctccttggtttatttagacggttttctcaaggtaaactggggacag
ttttacattgccttgtaggccactaccattccattaaaagttttctctca
ccaatgggtcaggaaaaacccagatgttccttcatcagaggaatggatta
cagaaaaatggtgggtacatttacccaatgggagtactacctcagctatt
taaacaatgacctcatgaaagtctagggcaatgaatgacctagaaaattc
atcctgagtgag

gaattccttctgttttaaattgatttgctcattttgtttgctactttgct
tgtgttcagatttaaagaatgtcatagaaactggcagggtgtcatttgta
gagatccttataatgtgatgcgaataattaatatgagattttaaagaaga
taaccttaaaaatattacatttataaaatgataaagcatgtcatacatgt
tttgcttacatataaatacttagaataaaattagaaattatattagtgaa
gggaaatggcagtagtaggttcttttctagtgactgtgatctttcagaca
caggtatttgactaggtttacagtactgtgcatgtatttcttctaattga
gcaggacttgattccaagtagacacttgttggtcacctccaagataaaag
tacaattattataccactgggaatattttgccatttatatctcaaatatg
agattttaagacagtaacctttaaaaaattatatttataacatttggttt
ctaagaaaaaaactgttactgggagacagtactcagaagtttataatatc
cttaggtctcatgcgtagaacttggtgtgatgatgctgaacatgtgtacc
ccagcagcatcactcgtgggttcgtctattagggttcttactgcccagcc
aaccaaattcatgtggtagatatttggtaatttggtgcagtatgaggtct
tttaagatgtgaataagccaactaaactttgctgtgttgaataaattaac
attgttatggcagagtggggatgcttattgaagtagtgaattccttctga
agtattttcttgacttgtgtttatctttctgccatgagaaaatggagaaa
gcctttctagaagccagccagctaccaggctctgtcaacaagtttctgtt
ctttttaactgatcagatctgcagattctttcacggctgcacagagagaa
caagccattgagtacctcactgacatgtaattcatctgggaacagtagtt
cttagagtacctgctcagtgggagggcttacgctctgtctacttgtgtct
gcccagcaacatgctctagttagggcaaacactggggctctgcatagtct
gctcaggcattcccgccttaagtacattcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67076897_67078055
seq2: B6Ng01-323A03.b_45_1206 (reverse)

seq1  CTCACTCAGGATGATATTTTCTAGTTCCATCCATTTGCCTAAGAATTTCA  50
      |||||||||||||| ||||||||| | ||| || |||||  ||| |||||
seq2  CTCACTCAGGATGA-ATTTTCTAGGT-CATTCA-TTGCCCTAGACTTTCA  47

seq1  TGAAGTCATTGTTTATAATAGCTGA-GTAGTACT-CCATTGTGTAAATGT  98
      ||| ||||||||||| ||||||||| |||||||| |||||| ||||||||
seq2  TGAGGTCATTGTTTA-AATAGCTGAGGTAGTACTCCCATTGGGTAAATGT  96

seq1  A-CCAC--ATTTTCTGT-ATCCATTCCTCTGTTGAAGG-ACATCTGGGTT  143
      | ||||   |||||||| ||||||||||||| |||||| |||||||||||
seq2  ACCCACCATTTTTCTGTAATCCATTCCTCTGATGAAGGAACATCTGGGTT  146

seq1  TT--CTGACC--ATGGTGAGAGAAAAC-TTTAATGGAATGGTAGTGGGCC  188
      ||  ||||||   |||||||||||||| ||||||||||||||||| ||||
seq2  TTTCCTGACCCATTGGTGAGAGAAAACTTTTAATGGAATGGTAGT-GGCC  195

seq1  TACAAGGCAAATGTAAAACTGTCCCCAGTTTTACCTTTGAGAAAAACCGT  238
      |||||||| ||||||||||||||||||| |||||| ||||| ||||||||
seq2  TACAAGGC-AATGTAAAACTGTCCCCAG-TTTACC-TTGAG-AAAACCGT  241

seq1  CTAAATAAACCAAGGAGGATGAATTGGTACCAGCGCTGCACCTTCCTCTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAACCAAGGAGGATGAATTGGTACCAGCGCTGCACCTTCCTCTT  291

seq1  CCAGTGAATATTATGCTAGGGTGGCTCAGTAGCGGAAAGCACACCGAGCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAATATTATGCTAGGGTGGCTCAGTAGCGGAAAGCACACCGAGCA  341

seq1  GGCCCTGACTTTGATCTCCAACAACATCCCCTCTGAAACGTCAGCCATTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGACTTTGATCTCCAACAACATCCCCTCTGAAACGTCAGCCATTA  391

seq1  GAGCTTTAGTCATTAGGTCAATAAGGCTTTGTGCTCATCTAAGTCTGGGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAGTCATTAGGTCAATAAGGCTTTGTGCTCATCTAAGTCTGGGT  441

seq1  TGGTAAGTGTCCTCTTGACTTCGTGGCAGATTCATCAAATCCCATGCATG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGTCCTCTTGACTTCGTGGCAGATTCATCAAATCCCATGCATG  491

seq1  TCATGAACCTGTGCTGTGTGCTGTTGTTAAAGGGATGAGTGAAGACCAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACCTGTGCTGTGTGCTGTTGTTAAAGGGATGAGTGAAGACCAAA  541

seq1  TCTACTAAAACTAGTTTGAAATTTAATATTGTCTTGGTGGGATAAAAACA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAAACTAGTTTGAAATTTAATATTGTCTTGGTGGGATAAAAACA  591

seq1  AAAAATTCTTACCATGCCCTTGTGATAGTCTTTTGTATTTGTTCTTTCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTTACCATGCCCTTGTGATAGTCTTTTGTATTTGTTCTTTCTC  641

seq1  TTAACACATTGTGGGAGGAGAGAAGTTGTGTTATTCACAGTTTCAGTTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACATTGTGGGAGGAGAGAAGTTGTGTTATTCACAGTTTCAGTTGG  691

seq1  GATATCTCACACTTCACATTTGCTTAATAAGATATGTTTAACTGGCAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTCACACTTCACATTTGCTTAATAAGATATGTTTAACTGGCAAAG  741

seq1  AACATGGCTTTTTAAATTCTAATTTTTAATCTCCTTTACCACAATGACCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTTTTTAAATTCTAATTTTTAATCTCCTTTACCACAATGACCC  791

seq1  AATCTTTTGCTTTAAAAAACAACAACAAAAACTTGCCAAGGACTGGAGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTGCTTTAAAAAACAACAACAAAAACTTGCCAAGGACTGGAGAT  841

seq1  GGCGAAGTGATTAAGAACACTTTTGCTCCTGCAGAGAGTCCTGATTTGGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAGTGATTAAGAACACTTTTGCTCCTGCAGAGAGTCCTGATTTGGT  891

seq1  TTCCAGCACATATGTACATGATGGCTACCATTAATCTGTAACCCTAGATC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACATATGTACATGATGGCTACCATTAATCTGTAACCCTAGATC  941

seq1  CAGGGGATTCAGTGCTCTCTTCTGATCTCTGTGAACACCAGGCACACACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATTCAGTGCTCTCTTCTGATCTCTGTGAACACCAGGCACACACA  991

seq1  TGGTACATAGACATACAGGCAGGCAATGTACTCATATCCATAAAACAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATAGACATACAGGCAGGCAATGTACTCATATCCATAAAACAAAA  1041

seq1  TTAATGTAAAAACTACTTTCCATTTGCAGATCATTTTAATTTGGTTTATT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAAAAACTACTTTCCATTTGCAGATCATTTTAATTTGGTTTATT  1091

seq1  CCAATTAAGTATTAACTCCCTTCTTCAGTACTTACTGGCTGCATATGAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAGTATTAACTCCCTTCTTCAGTACTTACTGGCTGCATATGAAT  1141

seq1  TATGTCTAATTCTTAGAATTC  1159
      |||||||||||||||||||||
seq2  TATGTCTAATTCTTAGAATTC  1162


seq1: chr3_66887229_66888375
seq2: B6Ng01-323A03.g_67_1197

seq1  GAATTCCTTCTGTTTTAAATTGATTTGCTCATTTTGTTTGCTACTTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGTTTTAAATTGATTTGCTCATTTTGTTTGCTACTTTGCT  50

seq1  TGTGTTCAGATTTAAAGAATGTCATAGAAACTGGCAGGGTGTCATTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGATTTAAAGAATGTCATAGAAACTGGCAGGGTGTCATTTGTA  100

seq1  GAGATCCTTATAATGTGATGCGAATAATTAATATGAGATTTTAAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTTATAATGTGATGCGAATAATTAATATGAGATTTTAAAGAAGA  150

seq1  TAACCTTAAAAATATTACATTTATAAAATGATAAAGCATGTCATACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTAAAAATATTACATTTATAAAATGATAAAGCATGTCATACATGT  200

seq1  TTTGCTTACATATAAATACTTAGAATAAAATTAGAAATTATATTAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACATATAAATACTTAGAATAAAATTAGAAATTATATTAGTGAA  250

seq1  GGGAAATGGCAGTAGTAGGTTCTTTTCTAGTGACTGTGATCTTTCAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGGCAGTAGTAGGTTCTTTTCTAGTGACTGTGATCTTTCAGACA  300

seq1  CAGGTATTTGACTAGGTTTACAGTACTGTGCATGTATTTCTTCTAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTGACTAGGTTTACAGTACTGTGCATGTATTTCTTCTAATTGA  350

seq1  GCAGGACTTGATTCCAAGTAGACACTTGTTGGTCACCTCCAAGATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTTGATTCCAAGTAGACACTTGTTGGTCACCTCCAAGATAAAAG  400

seq1  TACAATTATTATACCACTGGGAATATTTTGCCATTTATATCTCAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTATACCACTGGGAATATTTTGCCATTTATATCTCAAATATG  450

seq1  AGATTTTAAGACAGTAACCTTTAAAAAATTATATTTATAACATTTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAAGACAGTAACCTTTAAAAAATTATATTTATAACATTTGGTTT  500

seq1  CTAAGAAAAAAACTGTTACTGGGAGACAGTACTCAGAAGTTTATAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAAAAACTGTTACTGGGAGACAGTACTCAGAAGTTTATAATATC  550

seq1  CTTAGGTCTCATGCGTAGAACTTGGTGTGATGATGCTGAACATGTGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCTCATGCGTAGAACTTGGTGTGATGATGCTGAACATGTGTACC  600

seq1  CCAGCAGCATCACTCGTGGGTTCGTCTATTAGGGTTCTTACTGCCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCATCACTCGTGGGTTCGTCTATTAGGGTTCTTACTGCCCAGCC  650

seq1  AACCAAATTCATGTGGTAGATATTTGGTAATTTGGTGCAGTATGAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATTCATGTGGTAGATATTTGGTAATTTGGTGCAGTATGAGGTCT  700

seq1  TTTAAGATGTGAATAAGCCAACTAAACTTTGCTGTGTTGAATAAATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGTGAATAAGCCAACTAAACTTTGCTGTGTTGAATAAATTAAC  750

seq1  ATTGTTATGGCAGAGTGGGGATGCTTATTGAAGTAGTGAATTCCTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATGGCAGAGTGGGGATGCTTATTGAAGTAGTGAATTCCTTCTGA  800

seq1  AGTATTTTCTTGACTTGTGTTTATCTTTCTGCCATGAGAAAATGGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCTTGACTTGTGTTTATCTTTCTGCCATGAGAAAATGGAGAAA  850

seq1  GCCTTTCTAGAAGCCAGCCAGCTACCAGGCTCTGTCAACAAGTTTCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTAGAAGCCAGCCAGCTACCAGGCTCTGTCAACAAGTTTCTGTT  900

seq1  CTTTTTAACTGATCAGATCTGCAGGATTCTTTCACGGCTGCACAGAGAAG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  CTTTTTAACTGATCAGATCTGCA-GATTCTTTCACGGCTGCACAGAG-AG  948

seq1  AACAAGCCATTGAGTACCTCACTGACATGTTAATTCATCT-GGAACAGTT  999
      ||||||||||||||||||||||||||||| |||||||||| ||||||| |
seq2  AACAAGCCATTGAGTACCTCACTGACATG-TAATTCATCTGGGAACAG-T  996

seq1  AGTTTCCTTAAGAGTAACCTGCTCAGT-GGAGGGTTTACCGCTCTGTCCT  1048
      ||||  ||| ||||| ||||||||||| |||||| ||| |||||||||  
seq2  AGTT--CTT-AGAGT-ACCTGCTCAGTGGGAGGGCTTA-CGCTCTGTC--  1039

seq1  TACTTGTGTCTGCCCAGCCAACAATGCTCTAGGTTAGGCAAACACTGGGG  1098
      ||||||||||||||||| |||| ||||||||| |  ||||||||||||||
seq2  TACTTGTGTCTGCCCAG-CAAC-ATGCTCTAGTTAGGGCAAACACTGGGG  1087

seq1  CTTCTGCAATAGTCTGCTCAGGCATTCGCG-CTTAAGTTTACACATTCTA  1147
      | ||||| ||||||||||||||||||| || |||||||    ||||||||
seq2  C-TCTGC-ATAGTCTGCTCAGGCATTCCCGCCTTAAGT----ACATTCTA  1131


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