BAC Information

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BAC

Clone NameB6Ng01-323C19
Chromosome3 (Build37)10 (Build37)
Map Location 39,928,259 - 39,928,77184,526,272 - 84,527,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323C19.bB6Ng01-323C19.g
ACCGA111823GA111824
length996790
definitionB6Ng01-323C19.b B6Ng01-323C19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,928,259 - 39,928,771)(84,526,272 - 84,527,061)
sequence
gaattcagtcaacttcagaaaaaacaggcaccatatgctttctttcactt
ttgtttccttgatttttatgtacaaattagactatctagtagactaaaga
tgaccagtcaaagagaagagtagtagagagtggggaaaaacgtgctcaac
atataatatatgaatgtataaacccttttttaaaatcctgcctaattgga
cttaagtcccagttggtaggagggaatgctctcctggttcctgatgctgt
aaagcaagcaaatactcgtggctggagaggccatggactgtacaggtgaa
ttttccattttcctaagccaatataatttctaactgcattctaagtactt
atcatgatgcccactgataagtgtagtccccagcccttatcaatgaagct
tctttttgcagcagtggtccatgactggtcaaaatgcagagagtagctgg
cattggttatccaacccaaatctgtagtgcaacccctgccctaagaccca
ggaaaagccatggacgaggggacagaaaggttgaaggagccagaggacca
ggatgcctgctacatgatagagtcttccatatatgaccaggaccttgaag
ccaggaaatctcaacagtatggttgcctaagcaagactaacatgatagca
atggcagctgatatgccagcgtaggctggggaagtttcacaaaggaccca
gctccagagaaagctgcagggctacagtggctgctgaaaaggaagacttg
ggttctgtagggataagaccgcctgatagactctctaatctcaatccatc
agctctaaatacacgaacacacacacacacaaataataataatttaagaa
gaggtcatgaatttgaggagtagaaagggcatacaaggagttggatcagg
aacaaaatacgtagaaatgatgtaaatacagtgcctgtatataaaattct
ccaaaaatattttaaaaaaacttaaaataaaaaactaaaaatattt

gaattcttttgcaatgttaaaaaaaaagatgtgcttgctatctctaagat
tcaaggggctggggtaatgggatgctgattcatggaataaccaaaaggga
gcttatggtaatgactgaattgatatgtaaataagagactgaattgatat
ataaataaaagactgggccttgttctgggagaactgagctatctagatga
gctgtctggagagagagagaaagagagagagagagagagagttcttttag
aatgttttctaccagctatccagagaaagaactgctttaggagctaacac
agttattttagaaaattttctggctttctggttttaatcagaaaacccaa
gagttacttttagaatttttctaacaggatttctgacttggtcagaaaat
ccaataatttttttctgactttgattggaaaacctatgatctattcagag
agcatttagaaatttctctaacacaagagagccatctctagcagaaagct
gtcttggtcagggagctgtcttgagtaaaaaagctatctggagtagaata
cagagctacagagagctatctagggagctaccttgagcagaatttagggc
atcagcttgtgacccatgattttgagtcctttgtttcactgttcccagac
accctttctctcaggaacccttctccaagcctaggttggtccttggcagg
ttctacctttgatgttgaggtgtgtttttcatatccagcagtaggattca
catccattctgcctgtcttctttttttttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39928259_39928771
seq2: B6Ng01-323C19.b_439_910

seq1  AAGCTTCTTTTTGCAATAGATGAAGACCACTGAAGAAATATATAACTGGT  50
      |||||||||||||||  || ||  | ||             || ||||||
seq2  AAGCTTCTTTTTGCAGCAG-TG--GTCC-------------ATGACTGGT  34

seq1  CAAAATACAGAGAACAATTAACTGTGAGGTGCCCAGCCCTACCTGATGAA  100
      |||||| ||||||  |  |  |  || | |  ||| |||         ||
seq2  CAAAATGCAGAGAGTAGCTGGCATTG-GTTATCCAACCC--------AAA  75

seq1  TCCACAACATAACTCCTATACTTCAGGTTCAGGAAAA--CGTGCAGAAGT  148
      ||   |    ||| |||   | | ||   ||||||||  | ||  || | 
seq2  TCTGTAGTGCAACCCCT-GCCCTAAGACCCAGGAAAAGCCATG--GACGA  122

seq1  GGAGGCAGAAAGACAGTGAGAGCCAAGAGAAAAGGACACCTGCTGTGAGA  198
      || | |||||||   |   ||||||   ||  ||||  ||||||    ||
seq2  GGGGACAGAAAGGTTGAAGGAGCCAGAGGACCAGGATGCCTGCTACATGA  172

seq1  CTGGGTGTTCTCTATATAACAGAGAAGCTGCTCCCTACAAAATCTCAGTA  248
        | || |||  ||||| ||  || | ||     | |  ||||||||  |
seq2  TAGAGTCTTCCATATATGAC-CAGGACCTTGAAGCCAGGAAATCTCAACA  221

seq1  ATATTGTTTCCCAAACAAGACTTGTAAGATGACAACAGCAGTGGACATGC  298
       ||| ||| || || |||||||   | |||  |||  ||||  || ||||
seq2  GTATGGTTGCCTAAGCAAGACTAACATGATAGCAATGGCAGCTGATATGC  271

seq1  CAGTGTAGATGGGGGAATTGTTTGA-----GACCC-CATCCATAGATGAA  342
      ||| ||||   ||||||  |||| |     |||||   |||| |||  ||
seq2  CAGCGTAGGCTGGGGAA--GTTTCACAAAGGACCCAGCTCCAGAGA--AA  317

seq1  GATCTACA-GGCAACTAATATCTTCAGAGAGAGGGAAAATCAGTTTC-CC  390
      |  || || ||| || | |  || | || | ||| | | |  | |||   
seq2  G--CTGCAGGGCTAC-AGTGGCTGCTGA-AAAGGAAGACTTGGGTTCTGT  363

seq1  AGGTATAAGTCC-CCTGGTAAGCTCTGACCAAAGTTGTCACTGC-TAAGC  438
      ||| ||||| || |||| ||  ||||   | ||  | ||| | | | |||
seq2  AGGGATAAGACCGCCTGATAGACTCT---CTAA--TCTCAATCCATCAGC  408

seq1  AAAAGTGCATATGAATAACAGTAAACAAACTATATCAACACTATCAATAA  488
               | | ||||   | | ||| || | | ||  | ||  |||||
seq2  ---------TCTAAATACACGAACACACAC-ACA-CACAAATAATAATAA  447

seq1  TTGAAGAAGAGGTCATGAATTTGAG  513
      || ||||||||||||||||||||||
seq2  TTTAAGAAGAGGTCATGAATTTGAG  472


seq1: chr10_84526272_84527061
seq2: B6Ng01-323C19.g_65_854

seq1  GAATTCTTTTGCAATGTTAAAAAAAAAGATGTGCTTGCTATCTCTAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAATGTTAAAAAAAAAGATGTGCTTGCTATCTCTAAGAT  50

seq1  TCAAGGGGCTGGGGTAATGGGATGCTGATTCATGGAATAACCAAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGCTGGGGTAATGGGATGCTGATTCATGGAATAACCAAAAGGGA  100

seq1  GCTTATGGTAATGACTGAATTGATATGTAAATAAGAGACTGAATTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGGTAATGACTGAATTGATATGTAAATAAGAGACTGAATTGATAT  150

seq1  ATAAATAAAAGACTGGGCCTTGTTCTGGGAGAACTGAGCTATCTAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAGACTGGGCCTTGTTCTGGGAGAACTGAGCTATCTAGATGA  200

seq1  GCTGTCTGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTTCTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTTCTTTTAG  250

seq1  AATGTTTTCTACCAGCTATCCAGAGAAAGAACTGCTTTAGGAGCTAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTACCAGCTATCCAGAGAAAGAACTGCTTTAGGAGCTAACAC  300

seq1  AGTTATTTTAGAAAATTTTCTGGCTTTCTGGTTTTAATCAGAAAACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTAGAAAATTTTCTGGCTTTCTGGTTTTAATCAGAAAACCCAA  350

seq1  GAGTTACTTTTAGAATTTTTCTAACAGGATTTCTGACTTGGTCAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTTTAGAATTTTTCTAACAGGATTTCTGACTTGGTCAGAAAAT  400

seq1  CCAATAATTTTTTTCTGACTTTGATTGGAAAACCTATGATCTATTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTTTTTTCTGACTTTGATTGGAAAACCTATGATCTATTCAGAG  450

seq1  AGCATTTAGAAATTTCTCTAACACAAGAGAGCCATCTCTAGCAGAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAGAAATTTCTCTAACACAAGAGAGCCATCTCTAGCAGAAAGCT  500

seq1  GTCTTGGTCAGGGAGCTGTCTTGAGTAAAAAAGCTATCTGGAGTAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTCAGGGAGCTGTCTTGAGTAAAAAAGCTATCTGGAGTAGAATA  550

seq1  CAGAGCTACAGAGAGCTATCTAGGGAGCTACCTTGAGCAGAATTTAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACAGAGAGCTATCTAGGGAGCTACCTTGAGCAGAATTTAGGGC  600

seq1  ATCAGCTTGTGACCCATGATTTTGAGTCCTTTGTTTCACTGTTCCCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTGTGACCCATGATTTTGAGTCCTTTGTTTCACTGTTCCCAGAC  650

seq1  ACCCTTTCTCTCAGGAACCCTTCTCCAAGCCTAGGTTGGTCCTTGGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCTCTCAGGAACCCTTCTCCAAGCCTAGGTTGGTCCTTGGCAGG  700

seq1  TTCTACCTTTGATGTTGAGGTGTGTTTTTCATATCCAGCAGTAGGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTTGATGTTGAGGTGTGTTTTTCATATCCAGCAGTAGGATTCA  750

seq1  CATCCATTCTGCCTGTCTTCTTTTTTTTTGGGGGGGGGGG  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCTGCCTGTCTTCTTTTTTTTTGGGGGGGGGGG  790


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