BAC Information

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BAC

Clone NameB6Ng01-325J03
Chromosome3 (Build37)
Map Location 18,052,527 - 18,053,683
singlet/doubletsinglet
Overlap geneCyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153, Armc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325J03.bB6Ng01-325J03.g
ACCGA113595GA113596
length1,1981,137
definitionB6Ng01-325J03.b B6Ng01-325J03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgaaattgagcaactactaaaaggccatggggaaggtagctt
tcaaggagaggaaagagaagccagattgtgtggagaagggatagaagata
atagagcaagaagggttgagttgggtgaaggataagagggcagggcagag
caagggagagtattatagtgaggcataacactaaagatctttgaaaatgc
tatatggaaatctacttttgaagaagctttctaatgtatctacatataca
aatatacaaaattataaatggcattactttatgatggagaaacaatgtct
aactcaagacagtatagagtatcgcattaaaagccttttgtcaggtatat
gttacctcttttcttttcgtttttttttttaacttagttattctgcacaa
ccatctcacatggcatagcacatttattactctacttacaacatgagcga
tcaagggagaaagcagttgaagaacttctcaaaaagtgctggctcagctc
tgattttttattttaattttttattggttattttatttttaatttatatt
tcattttttactagataatttcttcatttacatttcaaatgctatcctga
aagtaccctatacactctccctatcttaatccccaacccgccactcctgc
ttcctggccctggcattctcctgtactgggcatataatcttcgcaagacc
aagggcctttcctcccaatgatgaccgattaggccatcttctgctacata
tacagctagagacacgagctacttgttagtttatattgttgatcctccta
tagggttgcaaaccccttcagctccttgggtactttttctagttcctcca
ttggggacatgtgttccaactaatagatgattgtgagcatccacttctgt
atttgctaggcccaggcatagcctcacaagagtctgctatatcagggtcc
attcagcaaaatttgctggcatatgcatagtatctgcgtttggtgttgta
tatggtatggatgcccaagtgcgccagtctctggtcttcatttcagctcc
aaacttggttctatactctccatgggtatttgtctcattctaaggaagag
gtaaggatccacacctggcctcgtctctggattcatgtgtttgcaatgta
tctggaatctcaagttctggcatcatacacttaaggagggacatacat

gaattcttgtttggtatgtacaaagtcctgggtgtgaaccccagcaatac
agaaacaaatttaaaaaaagtatttggtaccaatacattcttatgcttat
gagaaaacattctattagaaatattggacaaagtcaggttgtcacatatt
ttagaagaaagtggaaacacttgagtttctagtgtaccttgaagccaggt
actgacatgactcttacattcttaaattattgtttcctatcatgtctaaa
aaatactgctgaaaacaaatgggatgtattagtattttccaaatttaaag
aggatggaggaatgcaagtttcagaccagcctatgttatgtgctatgacc
ttgtctagatagaggataatggagggatccaggagcatggggagggcagc
agggtgtaagaatttgacaaatacagtgtactggtatttgaaattcccaa
ataaatcaaaaataaataaaaaatattaacttcaaataactcccaagggc
accagaacaatacatccactaaaacttgttttatacttaaaatgaatttt
aaagagcaggcaatgtcgccttgtagcttcctgcttctcagtcttcagat
gtgtctatagctgtagctatgggtgtggacacagacacttccaggcattc
cttttctgcccagacatttctttccaggttaaatacacacataagcatta
gtggtaggcctctcaatgaaaagtaaaatgaaattcacatgcataaagtg
acatatacatgtcaggggactcacagcctctcctcccacgaatataccta
tcctggatctattctggatgcaacgaggcctgagatggaacagtcctcgg
gtagctgcagagacagcccaggaatggtagtaaagcagttcagccagtgg
tcagcattattttaacacagagccagcatccatagctgctagaattttac
tagccttaagtaatagaaaatttgtcaaatatgtatacttgaccaaatac
ctagatttctcatttctttacataatcacacaaatgacacaactctccaa
agtctgaatagaagagaggagagaggtcccttgctcacagttagagtcag
ctaccaggaaaagagcatcaactaccaaggtgccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18052527_18053683
seq2: B6Ng01-325J03.g_67_1203

seq1  GAATTCTTGTTTGGTATGTACAAAGTCCTGGGTGTGAACCCCAGCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTGGTATGTACAAAGTCCTGGGTGTGAACCCCAGCAATAC  50

seq1  AGAAACAAATTTAAAAAAAGTATTTGGTACCAATACATTCTTATGCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATTTAAAAAAAGTATTTGGTACCAATACATTCTTATGCTTAT  100

seq1  GAGAAAACATTCTATTAGAAATATTGGACAAAGTCAGGTTGTCACATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACATTCTATTAGAAATATTGGACAAAGTCAGGTTGTCACATATT  150

seq1  TTAGAAGAAAGTGGAAACACTTGAGTTTCTAGTGTACCTTGAAGCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAAAGTGGAAACACTTGAGTTTCTAGTGTACCTTGAAGCCAGGT  200

seq1  ACTGACATGACTCTTACATTCTTAAATTATTGTTTCCTATCATGTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGACTCTTACATTCTTAAATTATTGTTTCCTATCATGTCTAAA  250

seq1  AAATACTGCTGAAAACAAATGGGATGTATTAGTATTTTCCAAATTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGCTGAAAACAAATGGGATGTATTAGTATTTTCCAAATTTAAAG  300

seq1  AGGATGGAGGAATGCAAGTTTCAGACCAGCCTATGTTATGTGCTATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAGGAATGCAAGTTTCAGACCAGCCTATGTTATGTGCTATGACC  350

seq1  TTGTCTAGATAGAGGATAATGGAGGGATCCAGGAGCATGGGGAGGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGATAGAGGATAATGGAGGGATCCAGGAGCATGGGGAGGGCAGC  400

seq1  AGGGTGTAAGAATTTGACAAATACAGTGTACTGGTATTTGAAATTCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTAAGAATTTGACAAATACAGTGTACTGGTATTTGAAATTCCCAA  450

seq1  ATAAATCAAAAATAAATAAAAAATATTAACTTCAAATAACTCCCAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAAAATAAATAAAAAATATTAACTTCAAATAACTCCCAAGGGC  500

seq1  ACCAGAACAATACATCCACTAAAACTTGTTTTATACTTAAAATGAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAACAATACATCCACTAAAACTTGTTTTATACTTAAAATGAATTTT  550

seq1  AAAGAGCAGGCAATGTCGCCTTGTAGCTTCCTGCTTCTCAGTCTTCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGGCAATGTCGCCTTGTAGCTTCCTGCTTCTCAGTCTTCAGAT  600

seq1  GTGTCTATAGCTGTAGCTATGGGTGTGGACACAGACACTTCCAGGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATAGCTGTAGCTATGGGTGTGGACACAGACACTTCCAGGCATTC  650

seq1  CTTTTCTGCCCAGACATTTCTTTCCAGGTTAAATACACACATAAGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGCCCAGACATTTCTTTCCAGGTTAAATACACACATAAGCATTA  700

seq1  GTGGTAGGCCTCTCAATGAAAAGTAAAATGAAATTCACATGCATAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGCCTCTCAATGAAAAGTAAAATGAAATTCACATGCATAAAGTG  750

seq1  ACATATACATGTCAGGGGACTCACAGCCTCTCCTCCCACGAATATACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACATGTCAGGGGACTCACAGCCTCTCCTCCCACGAATATACCTA  800

seq1  TCCTGGATCTATTCTGGATGCAACGAGGCCTGAGATGGAACAGTCCTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATCTATTCTGGATGCAACGAGGCCTGAGATGGAACAGTCCTCGG  850

seq1  GTAGCTGCAGAGACAGCCCAGGAATGGTAGTAAAGCAGTTCAGCCAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCAGAGACAGCCCAGGAATGGTAGTAAAGCAGTTCAGCCAGTGG  900

seq1  TCAGCATTATTTTAACACAGAGCCAGCATCCATAGCTGCTAGAATTTTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGCATTATTTTAACACAGAGCCAGCATCCATAGCTGCTAGAATTTT-A  949

seq1  CTAGCCTTAAGTAATAGAAAAATTTGTCAAATATGTATACTTGACCAAAA  1000
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CTAGCCTTAAGTAATAG-AAAATTTGTCAAATATGTATACTTGACC-AAA  997

seq1  TACCTAAGATTTCTCATTTCTTTACATAAATTCAACCACAAATGACACAA  1050
      ||||| |||||||||||||||||||||||  |||  ||||||||||||||
seq2  TACCT-AGATTTCTCATTTCTTTACATAA--TCA--CACAAATGACACAA  1042

seq1  CTCTTCCAAAGGTCTGAAATAGAAGAGAAGGAGAAGAGGTCCTTTGCTCA  1100
      ||| |||||| ||||| |||||||||| ||||| |||||||| |||||||
seq2  CTC-TCCAAA-GTCTG-AATAGAAGAG-AGGAG-AGAGGTCCCTTGCTCA  1087

seq1  CAGTTAAGAGTCAGGCTACCAGGAAAAGAAGCATCCAACTTACACAAGGT  1150
      ||||| ||||||| |||||||||||||| ||||| |||| ||| ||||||
seq2  CAGTT-AGAGTCA-GCTACCAGGAAAAG-AGCAT-CAAC-TAC-CAAGGT  1131

seq1  GGCCATG  1157
       ||||||
seq2  -GCCATG  1137


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