BAC Information

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BAC

Clone NameB6Ng01-325N17
Chromosome3 (Build37)
Map Location 95,164,487 - 95,274,523
singlet/doubletdoublet
Overlap gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Upstream geneGm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325N17.bB6Ng01-325N17.g
ACCGA113808GA113809
length1,1591,198
definitionB6Ng01-325N17.b B6Ng01-325N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,164,487 - 95,165,643)(95,273,317 - 95,274,523)
sequence
gaattctccatgatgttaatagctgtgatgttaacagctgtgacgttaat
agctgacccataagttcaaaatgtactgctgctttgctgaccaatcataa
taacccaccataagggcaggcagagtgagtcactaagccaaaggtagtca
tcctatgcaaaccaaccaatgcgtgaaaggttacttgctacaccagtgag
aataagccagctaggcctgttgcctaaatctcccccttacaaggtataaa
aagtgtgttctttctttctttggggtctttcctcttgcctgcatgcagag
ggggttccccaacaagttggatctattaaaaaaatcctcttgtggtttgc
agtgatatcaatctctgtggtctttgtgagtgagggtcttttgatggact
ccaacagctgccccagcccggtagtatagatcagattaacaactaacccc
cctcccccattctgtcttttttctttttgagcagcctctcactgagtggc
cctgactggcatggaactcactatgttgaacaagctggccttgaactcat
gaagatattattgcctctgcctcctgtgtgctggtagccatgtgctacca
taccacagccctgtcttttctttatatctctaaaatgaaattaaaattaa
aatctacagtataatatttgcatatttttcatagtctggtcctagtttac
ctccctggccatattatttcattcatccttccacattctgcatgtctctt
tagatattttacatgtctttgttggttttcagactcacaaatatatttta
cataccaaagcagacctggtcttcaggttctcccagcatccctcagaccc
cacctggtataccctgtcttctaccatgacctttacagcccaggggctga
gttgcccttcttacagagactcttccctgacctccttcctggggggccaa
tgagctcctgagagcagtttcccaataacctgtttatatatactccaatc
tgccttgaattggctcatttcacctgccgagaaataacttatcactcttt
ttttttttaaacttttctttcttttaaatatttacgtattttatttatgt
catgtatgtgggttaccactgtgctgcctcagacacacaagagagggcat
ccagatgcc
gaattcacttttctacatctgatgtctcctgaagaatcactctcctgaag
ctggacatggtggcacatgttggcaatatactgagttggatgtcagcctg
ggctacatgagaccctcccaaaaaaaaccaagcaagcaaccaaacaaaac
cattaaattagtccaaaactttcaacagatatacccagagtcagttttaa
gatccagagacctgatcagtgaggaaagatggcttgtaggagccatcagt
agatgtgttgccagttcccctcaaggacttcatgtgagaaacggccatgc
gtaagatggttagcttgtctggttttcgagccagggcactacatgtaggt
accatgtctgacagttctgtgatgtaagctgtcatcttgttccgtcgccg
ccgttctatttcactatgattttccctgcataaaaaaagagaaagaggct
ccattctaggtggtcacatctgttcctttggtatcaggagagtgatatgg
atacctggtcagctgctgaaggatgcagtaacttaggtctgatgatgttc
aaatctcagaagccaagcaggccaacctcatgcagagtaagaatgaaaca
aactaacaaagtctagacaaagaacaagtacatatcgcctctccagtcaa
ccacttccattaaatcaccacttcagagtgaatagtttaagaaataatta
aaacaaggtgttggtggtgcatgcctttaatcccagcactcatgaggcag
aggcaggcagatggatcactgagttctaagccagcctggtctacaaagta
acagcaagggcaacacacagaaatcctgtctcaggggtaaggttgagagt
gagtgtttttttaaatgttgatttcactcatttaagttcctaaggggata
aatctcagcttcactgacaacatgttttctagttaaacattgaaggctaa
taaaataaaatgaccaacttttggaaagttaagtaaatgaaccagtagct
tatgaaagaaaataatagtataaaggccagagctggtagcaaatactaca
atcagcactcgaagactataagcacaggagttttggttgaggcagccctg
gctatacaggcaagctatgactacttatgattccttgtttccaaatcaat
gaagcaggcatgtctgcccaatgcctgtctatactcctgtgctactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95164487_95165643
seq2: B6Ng01-325N17.b_46_1204

seq1  GAATTCTCCATGATGTTAATAGCTGTGATGTTAACAGCTGTGACGTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGATGTTAATAGCTGTGATGTTAACAGCTGTGACGTTAAT  50

seq1  AGCTGACCCATAAGTTCAAAATGTACTGCTGCTTTGCTGACCAATCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCCATAAGTTCAAAATGTACTGCTGCTTTGCTGACCAATCATAA  100

seq1  TAACCCACCATAAGGGCAGGCAGAGTGAGTCACTAAGCCAAAGGTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACCATAAGGGCAGGCAGAGTGAGTCACTAAGCCAAAGGTAGTCA  150

seq1  TCCTATGCAAACCAACCAATGCGTGAAAGGTTACTTGCTACACCAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCAAACCAACCAATGCGTGAAAGGTTACTTGCTACACCAGTGAG  200

seq1  AATAAGCCAGCTAGGCCTGTTGCCTAAATCTCCCCCTTACAAGGTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCAGCTAGGCCTGTTGCCTAAATCTCCCCCTTACAAGGTATAAA  250

seq1  AAGTGTGTTCTTTCTTTCTTTGGGGTCTTTCCTCTTGCCTGCATGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTCTTTCTTTCTTTGGGGTCTTTCCTCTTGCCTGCATGCAGAG  300

seq1  GGGGTTCCCCAACAAGTTGGATCTATTAAAAAAATCCTCTTGTGGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCCCAACAAGTTGGATCTATTAAAAAAATCCTCTTGTGGTTTGC  350

seq1  AGTGATATCAATCTCTGTGGTCTTTGTGAGTGAGGGTCTTTTGATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATCAATCTCTGTGGTCTTTGTGAGTGAGGGTCTTTTGATGGACT  400

seq1  CCAACAGCTGCCCCAGCCCGGTAGTATAGATCAGATTAACAACTAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCTGCCCCAGCCCGGTAGTATAGATCAGATTAACAACTAACCCC  450

seq1  CCTCCCCCATTCTGTCTTTTTTCTTTTTGAGCAGCCTCTCACTGAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCATTCTGTCTTTTTTCTTTTTGAGCAGCCTCTCACTGAGTGGC  500

seq1  CCTGACTGGCATGGAACTCACTATGTTGAACAAGCTGGCCTTGAACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGGCATGGAACTCACTATGTTGAACAAGCTGGCCTTGAACTCAT  550

seq1  GAAGATATTATTGCCTCTGCCTCCTGTGTGCTGGTAGCCATGTGCTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTATTGCCTCTGCCTCCTGTGTGCTGGTAGCCATGTGCTACCA  600

seq1  TACCACAGCCCTGTCTTTTCTTTATATCTCTAAAATGAAATTAAAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGCCCTGTCTTTTCTTTATATCTCTAAAATGAAATTAAAATTAA  650

seq1  AATCTACAGTATAATATTTGCATATTTTTCATAGTCTGGTCCTAGTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGTATAATATTTGCATATTTTTCATAGTCTGGTCCTAGTTTAC  700

seq1  CTCCCTGGCCATATTATTTCATTCATCCTTCCACATTCTGCATGTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCCATATTATTTCATTCATCCTTCCACATTCTGCATGTCTCTT  750

seq1  TAGATATTTTACATGTCTTTGTTGGTTTTCAGACTCACAAATATATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTACATGTCTTTGTTGGTTTTCAGACTCACAAATATATTTTA  800

seq1  CATACCAAAGCAGACCTGGTCTTCAGGTTCTCCCAGCATCCCTCAGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAAGCAGACCTGGTCTTCAGGTTCTCCCAGCATCCCTCAGACCC  850

seq1  CACCTGGTATACCCTGTCTTCTACCATGACCTTTACAGCCCAGGGGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTATACCCTGTCTTCTACCATGACCTTTACAGCCCAGGGGCTGA  900

seq1  GTTGCCCTTCTTACAGAGACTCTTCCCTGACCTCCTTCCTGGGGGGCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTTCTTACAGAGACTCTTCCCTGACCTCCTTCCTGGGGGGCCAA  950

seq1  TGAGCTCCTGAGAGCAGTTTCCCAATAAACCTGTTTATATATACTCCAAT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGCTCCTGAGAGCAGTTTCCCAAT-AACCTGTTTATATATACTCCAAT  999

seq1  CTGCCTTGAATTGGCTCATTTCACCTGCCGAGAAATAACTTATCACTC-T  1049
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCCTTGAATTGGCTCATTTCACCTGCCGAGAAATAACTTATCACTCTT  1049

seq1  TTTTTTTTTAAAC-TTTCTTTCTTTTAAATATTTACGTA-TTTATTTATG  1097
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TTTTTTTTTAAACTTTTCTTTCTTTTAAATATTTACGTATTTTATTTATG  1099

seq1  TCATGTATGTGGGT--ACACTGTTGCTGCCTTCAGACACACAAGAAGAGG  1145
      ||||||||||||||   ||||| ||||||| ||||||||||||| |||||
seq2  TCATGTATGTGGGTTACCACTG-TGCTGCC-TCAGACACACAAG-AGAGG  1146

seq1  GCAT-CAGATGCC  1157
      |||| ||||||||
seq2  GCATCCAGATGCC  1159

seq1: chr3_95273317_95274523
seq2: B6Ng01-325N17.g_69_1266 (reverse)

seq1  CCAGTAGCA-GGGATTATAGACAGGCATGTGCCAG-CATGCCTGGCCTCA  48
      |||||||||  ||| |||||||||||||  | ||| ||||||| || |||
seq2  CCAGTAGCACAGGAGTATAGACAGGCATTGGGCAGACATGCCT-GCTTCA  49

seq1  TTTGGATATTTGGAACAGGGTATCACTATGTAGTCCATGCTGCCCTGTAT  98
      ||  ||| || | |||| || |||| || ||||||   |||  |||||||
seq2  TT--GAT-TTGGAAACAAGGAATCA-TAAGTAGTCATAGCTTGCCTGTAT  95

seq1  AGCCCAGGCTGGCCTCAAACCCAAAACTCTTGTGCTTTATAGTCTTCGGA  148
      ||||  |||| |||||||  ||||||||| ||||| ||||||||||| ||
seq2  AGCCAGGGCT-GCCTCAA--CCAAAACTCCTGTGC-TTATAGTCTTC-GA  140

seq1  GTGCTGAATTGTAGTATTTGCTACCAGCTCTGGCCTTTATACTATTA-TT  197
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGCTG-ATTGTAGTATTTGCTACCAGCTCTGGCCTTTATACTATTATTT  189

seq1  TCTTTCATAAGCTACTGGTTCATTTACTTAACTTTTCAAAAGTTGGTCAT  247
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTCATAAGCTACTGGTTCATTTACTTAACTTTCCAAAAGTTGGTCAT  239

seq1  TTTATTTTA-TAGCCTTCAAATGTTTTAACTAGAAAACATGTGGTCAGTG  296
      ||||||||| |||||||| |||| |||||||||||||||||| |||||||
seq2  TTTATTTTATTAGCCTTC-AATG-TTTAACTAGAAAACATGTTGTCAGTG  287

seq1  AAGCTGAGATTTATCCCCTTAGGAACTTAAATGAGTGAAATCAACATTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGATTTATCCCCTTAGGAACTTAAATGAGTGAAATCAACATTTA  337

seq1  AAAAAACACTCACTCTCAACCTTACCCCTGAGACAGGATTTCTGTGTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACTCACTCTCAACCTTACCCCTGAGACAGGATTTCTGTGTGTT  387

seq1  GCCCTTGCTGTTACTTTGTAGACCAGGCTGGCTTAGAACTCAGTGATCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTGTTACTTTGTAGACCAGGCTGGCTTAGAACTCAGTGATCCA  437

seq1  TCTGCCTGCCTCTGCCTCATGAGTGCTGGGATTAAAGGCATGCACCACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCATGAGTGCTGGGATTAAAGGCATGCACCACCA  487

seq1  ACACCTTGTTTTAATTATTTCTTAAACTATTCACTCTGAAGTGGTGATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTTTTAATTATTTCTTAAACTATTCACTCTGAAGTGGTGATTT  537

seq1  AATGGAAGTGGTTGACTGGAGAGGCGATATGTACTTGTTCTTTGTCTAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGTGGTTGACTGGAGAGGCGATATGTACTTGTTCTTTGTCTAGA  587

seq1  CTTTGTTAGTTTGTTTCATTCTTACTCTGCATGAGGTTGGCCTGCTTGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGTTTGTTTCATTCTTACTCTGCATGAGGTTGGCCTGCTTGGC  637

seq1  TTCTGAGATTTGAACATCATCAGACCTAAGTTACTGCATCCTTCAGCAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGATTTGAACATCATCAGACCTAAGTTACTGCATCCTTCAGCAGC  687

seq1  TGACCAGGTATCCATATCACTCTCCTGATACCAAAGGAACAGATGTGACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGTATCCATATCACTCTCCTGATACCAAAGGAACAGATGTGACC  737

seq1  ACCTAGAATGGAGCCTCTTTCTCTTTTTTTATGCAGGGAAAATCATAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAATGGAGCCTCTTTCTCTTTTTTTATGCAGGGAAAATCATAGTG  787

seq1  AAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATCACAGAACTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATCACAGAACTG  837

seq1  TCAGACATGGTACCTACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGGTACCTACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCT  887

seq1  AACCATCTTACGCATGGCCGTTTCTCACATGAAGTCCTTGAGGGGAACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTTACGCATGGCCGTTTCTCACATGAAGTCCTTGAGGGGAACTG  937

seq1  GCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAG  987

seq1  GTCTCTGGATCTTAAAACTGACTCTGGGTATATCTGTTGAAAGTTTTGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGATCTTAAAACTGACTCTGGGTATATCTGTTGAAAGTTTTGGA  1037

seq1  CTAATTTAATGGTTTTGTTTGGTTGCTTGCTTGGTTTTTTTTGGGAGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAATGGTTTTGTTTGGTTGCTTGCTTGGTTTTTTTTGGGAGGGT  1087

seq1  CTCATGTAGCCCAGGCTGACATCCAACTCAGTATATTGCCAACATGTGCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTAGCCCAGGCTGACATCCAACTCAGTATATTGCCAACATGTGCC  1137

seq1  ACCATGTCCAGCTTCAGGAGAGTGATTCTTCAGGAGACATCAGATGTAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCCAGCTTCAGGAGAGTGATTCTTCAGGAGACATCAGATGTAGA  1187

seq1  AAAGTGAATTC  1207
      |||||||||||
seq2  AAAGTGAATTC  1198