BAC Information

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BAC

Clone NameB6Ng01-327C19
Chromosome3 (Build37)
Map Location 45,080,435 - 45,169,781
singlet/doubletdoublet
Overlap geneLOC100039296
Upstream geneLOC676484
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C19.bB6Ng01-327C19.g
ACCGA114791GA114792
length1,137547
definitionB6Ng01-327C19.b B6Ng01-327C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,168,618 - 45,169,781)(45,080,435 - 45,080,986)
sequence
gaattctcagaatgttgaacagtctcccttgccagtaaatccctttggcc
tcaatacagaagaatacaatgaaattctgagtcttttaataaaatgtcaa
cagaatttctctccttttttttttttttttttttttggttagttaacttt
gtgatgtggcaattccttgcacatatgtaattgggtgctgagattgcaga
aatgcttcccttggacattaacagctagtggagtctcagcctgcgtggtg
agacattttgtaaaactgtgcttgatgtttctgacattcgtcagtgattg
tgaccaaattgtctattggctggaattctcaataatggaatttttatagt
gatctgcttcttctttatttgattaagtagatgtttatctctggctacat
tcatgtcttgccatagatcaagataatgtttcacccatagcatatgactt
ggttacttaaagaaccccattgatttttataataattagtaccaccaata
acatcctatgaatctgggaatcacaaatattcataattcttttaatagca
tggcagaatcaagctaggctaatatgagaaaactgaagttacaaattaaa
atattttttctgcaaaaaaaaaaaagtccttttttcttcctcaaagtcta
tagtttgagtttagcttgccataaacagagttctcagggtgtgtgtctgg
gataagcacagcaagcttacaccaatctttcttaaaaatatcagactcca
tgatggtaattagtcagtattgtgttattacagatgatcaatccaattta
gtatttcttatgctcaacataaagtaataccaaaggagtgtaagatctgg
tttgattcttagttgctgactgtaagaacaccttaatttctgtcttcatt
ttcaaatcaaactcataaatccgaagacattttgacatgtcaaccaggag
tatgagtgtaaaatgtttttagttgatacctgtgatacatagacaagagt
aataagctagtgtttacatctactgactatcatgtgttaaggtgtaagtg
actgctgtaccctgtctggctggggctttgtatgtccgatgccgttgtga
ctgccttctatctggaagagagttgcattgcaagtag
aagaacacaaccatcggaccattgtagaactaactaccttgcactgacag
ccctgaggcagccccgaatgcatgtggctttactagctgagtaaaatcct
ctcacgtttctggatagacatttctttcttgatgcataaatgagaaaaac
accctaatttacctacttaaaatacaataaaagcttttcatgaactagtt
gcctcaagctagaaagctgtgaaattttgaagatctaatgccaaggtagc
tgctatagtctcagttactgggtggtactggtattttgagcaaataattg
gataacactttatttccttctttaaaaaaagggggggtgaagattttgca
gtgacattcccagtgtcagcagtgacttcaacaacagttacgtaaaacgt
taagatgccgtcaggaagccccatttcacagttccgaaaactgttagtgg
atgtgtgggtgtgtgggtgtggaaaatagtctgtttattgtccctgagtt
tgtaatagagtgtgaaagagaagcagtcccagaaatatcaatctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45168618_45169781
seq2: B6Ng01-327C19.b_46_1182 (reverse)

seq1  CTACTTGCTAAATGGCAACTCCTCCTTCTCAGATAGAA-GCAGTTTCACA  49
      ||||||||  ||| |||||||   |||| ||||||||| ||||  |||||
seq2  CTACTTGC--AAT-GCAACTC--TCTTC-CAGATAGAAGGCAG--TCACA  42

seq1  AAGGCATCTGAACATAACAAAACCCCAAGCAGACAGGGTAAACAGCAGTC  99
      | |||||| | |||| ||||| |||||  ||||||||||  |||||||||
seq2  ACGGCATC-GGACAT-ACAAAGCCCCAGCCAGACAGGGT--ACAGCAGTC  88

seq1  ACTTACAACTTTACCACCATGATAGTCAGTAGATGTTAAACACCTTAGCT  149
      ||||||| ||| ||   |||||||||||||||||| |||||||  |||| 
seq2  ACTTACACCTTAAC--ACATGATAGTCAGTAGATG-TAAACAC--TAGC-  132

seq1  TTATTACTTCTTGTCTATGTAATTCACAGGTATCAAACTAAAAACATTTT  199
      ||||||| |||||||||||||  ||||||||||| |||||||||||||||
seq2  TTATTAC-TCTTGTCTATGTA--TCACAGGTATC-AACTAAAAACATTTT  178

seq1  ACAACTCATTACCTTCCTGGTTTGACATGTCAAAATTGTCTTCGGATTTA  249
      || ||||| |||  |||||| |||||||||||||| ||||||||||||||
seq2  AC-ACTCA-TAC--TCCTGG-TTGACATGTCAAAA-TGTCTTCGGATTTA  222

seq1  TGAGTTTGATTTGAAAATGAAGACAGAAATTAAGGTGTTCTTACAGTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGATTTGAAAATGAAGACAGAAATTAAGGTGTTCTTACAGTCAG  272

seq1  CAACCTAAGAATCAAACCAGATCTTACACTCC-TTGGTATTACTTTATGT  348
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAA-CTAAGAATCAAACCAGATCTTACACTCCTTTGGTATTACTTTATGT  321

seq1  TGAGCATAAGAAATACTAAATTGGATTGATCATCTGTAATAACACAATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAAGAAATACTAAATTGGATTGATCATCTGTAATAACACAATAC  371

seq1  TGACTAATTACCATCATGGAGTCTGATATTTTTAAGAAAGATTGGTGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATTACCATCATGGAGTCTGATATTTTTAAGAAAGATTGGTGTAA  421

seq1  GCTTGCTGTGCTTATCCCAGACACACACCCTGAGAACTCTGTTTATGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGTGCTTATCCCAGACACACACCCTGAGAACTCTGTTTATGGCA  471

seq1  AGCTAAACTCAAACTATAGACTTTGAGGAAGAAAAAAGGACTTTTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACTCAAACTATAGACTTTGAGGAAGAAAAAAGGACTTTTTTTTT  521

seq1  TTTGCAGAAAAAATATTTTAATTTGTAACTTCAGTTTTCTCATATTAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAAAAAATATTTTAATTTGTAACTTCAGTTTTCTCATATTAGCC  571

seq1  TAGCTTGATTCTGCCATGCTATTAAAAGAATTATGAATATTTGTGATTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGATTCTGCCATGCTATTAAAAGAATTATGAATATTTGTGATTCC  621

seq1  CAGATTCATAGGATGTTATTGGTGGTACTAATTATTATAAAAATCAATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCATAGGATGTTATTGGTGGTACTAATTATTATAAAAATCAATGG  671

seq1  GGTTCTTTAAGTAACCAAGTCATATGCTATGGGTGAAACATTATCTTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTAAGTAACCAAGTCATATGCTATGGGTGAAACATTATCTTGAT  721

seq1  CTATGGCAAGACATGAATGTAGCCAGAGATAAACATCTACTTAATCAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCAAGACATGAATGTAGCCAGAGATAAACATCTACTTAATCAAAT  771

seq1  AAAGAAGAAGCAGATCACTATAAAAATTCCATTATTGAGAATTCCAGCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGCAGATCACTATAAAAATTCCATTATTGAGAATTCCAGCCA  821

seq1  ATAGACAATTTGGTCACAATCACTGACGAATGTCAGAAACATCAAGCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATTTGGTCACAATCACTGACGAATGTCAGAAACATCAAGCACA  871

seq1  GTTTTACAAAATGTCTCACCACGCAGGCTGAGACTCCACTAGCTGTTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAAATGTCTCACCACGCAGGCTGAGACTCCACTAGCTGTTAAT  921

seq1  GTCCAAGGGAAGCATTTCTGCAATCTCAGCACCCAATTACATATGTGCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGGAAGCATTTCTGCAATCTCAGCACCCAATTACATATGTGCAA  971

seq1  GGAATTGCCACATCACAAAGTTAACTAACCAAAAAAAAAAAAAAAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCCACATCACAAAGTTAACTAACCAAAAAAAAAAAAAAAAAAAA  1021

seq1  AAGGAGAGAAATTCTGTTGACATTTTATTAAAAGACTCAGAATTTCATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAAATTCTGTTGACATTTTATTAAAAGACTCAGAATTTCATTG  1071

seq1  TATTCTTCTGTATTGAGGCCAAAGGGATTTACTGGCAAGGGAGACTGTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTGTATTGAGGCCAAAGGGATTTACTGGCAAGGGAGACTGTTC  1121

seq1  AACATTCTGAGAATTC  1164
      ||||||||||||||||
seq2  AACATTCTGAGAATTC  1137

seq1: chr3_45080435_45080986
seq2: B6Ng01-327C19.g_67_619

seq1  GAATTCAAGAACACAACCATCGGACCATTGTAGAACTAACTACCTTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAACACAACCATCGGACCATTGTAGAACTAACTACCTTGCAC  50

seq1  TGACAGCCCTGAGGCAGCCCCGAATGCATGTGGCTTTACTAGCTGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCCTGAGGCAGCCCCGAATGCATGTGGCTTTACTAGCTGAGTAA  100

seq1  AATCCTCTCACGTTTCTGGATAGACATTTCTTTCTTGATGCATAAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTCACGTTTCTGGATAGACATTTCTTTCTTGATGCATAAATGAG  150

seq1  AAAAACACCCTAATTTACCTACTTAAAATACAATAAAAGCTTTTCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACCCTAATTTACCTACTTAAAATACAATAAAAGCTTTTCATGAA  200

seq1  CTAGTTGCCTCAAGCTAGAAAGCTGTGAAATTTTGAAGATCTAATGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCCTCAAGCTAGAAAGCTGTGAAATTTTGAAGATCTAATGCCAA  250

seq1  GGTAGCTGCTATAGTCTCAGTTACTGGGTGGTACTGGTATTTTGAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTGCTATAGTCTCAGTTACTGGGTGGTACTGGTATTTTGAGCAAA  300

seq1  TAATTGGATAACACTTTATTTCCTTCTTTAAAAAAAGGGGGGGTGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGATAACACTTTATTTCCTTCTTTAAAAAAAGGGGGGGTGAAGAT  350

seq1  TTTGCAGTGACATTCCCAGTGTCAGCAGTGACTTCAACAACAGTTACGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTGACATTCCCAGTGTCAGCAGTGACTTCAACAACAGTTACGTA  400

seq1  AAACGTTAAGATGCCGTCAGGAAGCCCCATTTCACAGTTCCGAAAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTAAGATGCCGTCAGGAAGCCCCATTTCACAGTTCCGAAAACTGT  450

seq1  TAGTGGATGTGTGGGTGTGTGGGTGTGGAAAATAGTCTGTTTATTGTCAC  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGTGGATGTGTGGGTGTGTGGGTGTGGAAAATAGTCTGTTTATTGTCCC  500

seq1  AGAGTTTGTAATAGAATGTGAAAGAGAAGCAGTCCCAG-AATATCATTCT  549
       |||||||||||||| |||||||||||||||||||||| ||||||| |||
seq2  TGAGTTTGTAATAGAGTGTGAAAGAGAAGCAGTCCCAGAAATATCAATCT  550

seq1  GTA  552
      |||
seq2  GTA  553