BAC Information

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BAC

Clone NameB6Ng01-327L24
Chromosome3 (Build37)12 (Build37)
Map Location 109,965,128 - 109,965,78168,768,817 - 68,769,196
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc25a24, Vav3, Ntng1, LOC100043181
Downstream geneLOC100043183, Prmt6, LOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L24.bB6Ng01-327L24.g
ACCGA115207GA115208
length1,1651,063
definitionB6Ng01-327L24.b B6Ng01-327L24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,965,128 - 109,965,781)(68,768,817 - 68,769,196)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacacgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtt
accataggtgtgtgggttcatttttgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttcagctttactacag
agcaattgtgataaaaactgtcttagggtttctattcctgcacaaacatc
atgaccaagaagcagttggggaggaaagagtttattcagtttacactttc
cacattgcagttgatcaccaacggatgtcaggactggaactcaagcaggt
caggaaacaggagatgatgcagaggccatggagagctgttacttactggc
ttgctttccctggcttgctcaacctgctctcttatagaacacaagactag
ggatggcatcacctacaatgggccctttcccccttgatcactaattgaga
aattgccccacagctggatctcatggagacatttccccaactgaagctcc
tttctctgtgaatactccagcttgagtcaagttgacacacaaaaccagcc
aatacagattgtctttacataaatgctgggaggagactttaacttgttaa
ctgagtgcctcagagacgagccaggcgtccttagagaatctgcctggcta
actagaagaaaacagtgagtcctggattcaagaagagattgctgctgcat
ttagtccaaagaagc

gaattcctacctgaggcatacagaatggccgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtccgaatggctaagaccaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagattgtacaaccactctggaaatcagtctggcagttcctca
gaaacttggacatggtagtactggaggatcccccaatacctctcctgggc
atatatccagaagatgttgcaactagtaagaaagaaacatgctccactat
gttcatggcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagcactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgatatgtggatattagcccagaaac
ttagaatacccaagatataagttacagtttgcaaaacacatgaaactcag
gaagatcgaagaccaaagtgtggacactttgcctcctcttagaattggga
acaaaacacccatggaaaggagttacagagacaaagtttggagctgaggc
aaaaggatggaccatctagagactgccatatccagggatccatcccataa
tcagcttccaaatgctgacaccattacatacactagcaagattttgctga
taggaccctgatatagctgtctcttgtgagactatgctggggcctagcaa
acacataagtggatgctcacagtcagctattagatggatcacagggcccc
caatggaggagctagagaaattacccaagagctaaagggatatgcaacct
atagtgacacattatgaactaaccagtacccggactcttgactctagctg
catatgtatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109965128_109965781
seq2: B6Ng01-327L24.b_561_1212

seq1  GGGTTCATTTTTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATTTTTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC  50

seq1  TCTATACCAGTACCATGCAGTTTCAGCTTTACTACAGAGCAATTGTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCAGTACCATGCAGTTTCAGCTTTACTACAGAGCAATTGTGATA  100

seq1  AAAACTGTCTTAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCTTAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGC  150

seq1  AGTTGGGGAGGAAAGAGTTTATTCAGTTTACACTTTCCACATTGCAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGAGGAAAGAGTTTATTCAGTTTACACTTTCCACATTGCAGTTG  200

seq1  ATCACCAACGGATGTCAGGACTGGAACTCAAGCAGGTCAGGAAACAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAACGGATGTCAGGACTGGAACTCAAGCAGGTCAGGAAACAGGAG  250

seq1  ATGATGCAGAGGCCATGGAGAGCTGTTACTTACTGGCTTGCTTTCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAGAGGCCATGGAGAGCTGTTACTTACTGGCTTGCTTTCCCTGG  300

seq1  CTTGCTCAACCTGCTCTCTTATAGAACACAAGACTAGGGATGGCATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAACCTGCTCTCTTATAGAACACAAGACTAGGGATGGCATCACC  350

seq1  TACAATGGGCCC-TTCCCCCTTGATCACTAATTGAGAAATTGCCCCACAG  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAATGGGCCCTTTCCCCCTTGATCACTAATTGAGAAATTGCCCCACAG  400

seq1  CTGGATCTCATGGAGACATTTCCCCAACTGAAGCTCCTTTCTCTGTGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTGGATCTCATGGAGACATTTCCCCAACTGAAGCTCCTTTCTCTGTGAAT  450

seq1  ACTCCAGCTTGAGTCAAGTTGACACACAAAACCAGCCAATACAGA-TGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTCCAGCTTGAGTCAAGTTGACACACAAAACCAGCCAATACAGATTGTC  500

seq1  TTTACATAAATGCTGGGAGGAGACTTAAACTTG-TAACTGAGTG-CTCAG  546
      |||||||||||||||||||||||||| |||||| |||||||||| |||||
seq2  TTTACATAAATGCTGGGAGGAGACTTTAACTTGTTAACTGAGTGCCTCAG  550

seq1  AAGACAGAGGCAGGCGGTCCTTAGAGAAATCTGGCTGGCCAAACTAGAAG  596
       |||| ||| ||||| |||||||||| |||||| |||| | |||||||||
seq2  -AGAC-GAGCCAGGC-GTCCTTAGAG-AATCTGCCTGG-CTAACTAGAAG  595

seq1  -AAACAGTGAGCCCTGATTTCAAGAGAGAGA-TGCTGCCTGCATTTAGTC  644
       |||||||||| ||||  ||||||| ||||| ||||| ||||||||||||
seq2  AAAACAGTGAGTCCTGGATTCAAGA-AGAGATTGCTG-CTGCATTTAGTC  643

seq1  CAAAAGAAGC  654
      | ||||||||
seq2  C-AAAGAAGC  652


seq1: chr12_68768817_68769196
seq2: B6Ng01-327L24.g_753_1125 (reverse)

seq1  TTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGCTTAGTTC  50
      |||||||||||||||||||||||||||||  |  |||||||| |||||||
seq2  TTTGATACATATGCAGCTAGAGTCAAGAGTCC--GGGTACTGGTTAGTTC  48

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTA  100
      |||||| |||  || ||||| ||||||| |||||||||||| ||||||||
seq2  ATAATG-TGT--CA-CTATA-GGTTGCATATCCCTTTAGCT-CTTGGGTA  92

seq1  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGAC  150
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCTAATAGCTGAC  142

seq1  TGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGA  200
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TGTGAGCATCCACTTATGTGTTTGCTAGGCCCCAGCATAGTCTCACAAGA  192

seq1  GACAGCTACATCTGGGTCCTTTTGACAAAATCTTGCTAGTGTATGCAATG  250
      |||||||| ||| ||||||| |   |||||||||||||||||||| ||||
seq2  GACAGCTATATCAGGGTCCTATCAGCAAAATCTTGCTAGTGTATGTAATG  242

seq1  GTGTCAGCGTTTGGAAGCTGATTATGGGGTGGATTCCTGGATATGGCAGT  300
      |||||||| ||||||||||||||||||| ||||| |||||||||||||||
seq2  GTGTCAGCATTTGGAAGCTGATTATGGGATGGATCCCTGGATATGGCAGT  292

seq1  CTCTACATGGTCCAACCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAAC  350
      ||||| |||||||| |||||   |||||||||||||||||||||||||||
seq2  CTCTAGATGGTCCATCCTTTTGCCTCAGCTCCAAACTTTGTCTCTGTAAC  342

seq1  TCC-TTCCATGGGTGTTTTGTTTCCAATTCT  380
      ||| |||||||||||||||||| ||||||||
seq2  TCCTTTCCATGGGTGTTTTGTTCCCAATTCT  373


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