BAC Information

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BAC

Clone NameB6Ng01-328K16
Chromosome3 (Build37)
Map Location 124,060,861 - 124,183,001
singlet/doubletdoublet
Overlap geneLOC100043740, 1700006A11Rik
Upstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1
Downstream gene1700003H04Rik, LOC668817, LOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328K16.bB6Ng01-328K16.g
ACCGA115863GA115864
length1,0961,051
definitionB6Ng01-328K16.b B6Ng01-328K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,060,861 - 124,061,956)(124,181,966 - 124,183,001)
sequence
gaattcctctcactgtccatttttacttaagatgtctttcttggcttttt
tagtcctgttgaaacacacacacatacacacacacacacacacacacaca
cacacacacacacacacacacacaatttcatacaaagatataaaatccta
attcatcagggaaaatagctatcaagtgcatactgatcatattcaatgat
ataaaactattttaaaagaactctaatgccattttacagtgaaaaacctt
cacacaaatcatttttttttctgtttttatatggtattatttttttaatt
tattttttaattaggtattttcttcatttacatttcaaatgctattccaa
aagtcccccggacacccctcccccactgccctacacacccactcccactt
cttggccctggtgttcccctgtactgggacatatagagtttgcaagacca
aggggcctctcttaccaatgatgggcgactaggccaacttctgatacata
tgcagctagagacacgaactcagggagtactggttagttagtattgttgt
tccacctatagggttgcagatctctttagctccttgggtactttctctag
ctcctccattgggggctctgtgatccatccaatagctgactgtgagcatc
cacttctgtgtttgctaggccccagcatagtcttacaagagacagctata
tcagggtcctttcagcaaaatcttactagtgtatgcaatggtgtcattgt
ttggaggctgattatgggatggatccctgggtatggcagtctctagatgg
tccatccttttgtctcagctccaaactttgtctctgtaactcccttccat
gggtgtagcacaaatcatttttataactgagtttgcattgtccccaaact
gaagccaaccagaaatccttcaacagtgaaactgtgaaaacacacagctg
ctgctcaactagtgatatgggatggaacatctgccctctgagtttccatg
agcttcctgggttttcttttaaaaggtggagatctttttttttccatttt
tataaggatttagctcatttacattccaatgctattacgaagtccc

gaattctcagtttcttctccagcccctgccttcttgctcatttggccgat
ggccaccttccctcctactatactgataatggattaagcctttgaaacta
taagcaatccctaatttaatgcttccctttatatgagtttccctcatcat
ggtgtctcttcacagcaatagcacattggctaagacagttccccatagtt
tcagccattaaaatatttattctcaggtgcatggccttattgaggtaggc
atagggtatgtgtcattactggagaaagtgcatctctgggaacagacttt
gaggtttcaaaatccaggtgtcattcccagtttgttttctacttcaatta
tggttcaacatgtgagttctgagctcttagcttccatctcttgtttctat
gactctctgcagccacgcctccctgacttgatagtggtctcttatctctc
tagaactgagaactcaaaattaattctttcttttttaggtgccttggtca
tggtgtttcatgatagcaataaaaaataacttaaaaaatctatggtagat
gattacaatgtttagaaagccacttcatgacttttgcattaaagaataaa
aggcatggcatactttccaaaagtgctattaatttcaaggcttttaggat
ttttttcaaatgcccttaaagtttccatattttcattaactaatttaaaa
aacagtaaatctctgtggtaatttttaagacagtttttaataagcatgta
atctcaccacttaaaattttagataccaaaacttttcatcattcttattc
attcttaattaacaaatacaactacattttaaaagctgcatttaggcttt
tattatttttcaacttattaatattaattttcatgagtatacttcaaaaa
ttttaagcctgacttgtagacacataattgtaattccagctccttgagag
attgagtagagatgacttgagttcagacgctgagcagcgttttttttcat
ttttttatacatattagcctcatacatgcatgctatacaaagtccccata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124060861_124061956
seq2: B6Ng01-328K16.b_47_1142

seq1  GAATTCCTCTCACTGTCCATTTTTACTTAAGATGTCTTTCTTGGCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCACTGTCCATTTTTACTTAAGATGTCTTTCTTGGCTTTTT  50

seq1  TAGTCCTGTTGAAACACACACACATACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGTTGAAACACACACACATACACACACACACACACACACACACA  100

seq1  CACACACACACACACACACACACAATTTCATACAAAGATATAAAATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAATTTCATACAAAGATATAAAATCCTA  150

seq1  ATTCATCAGGGAAAATAGCTATCAAGTGCATACTGATCATATTCAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGGGAAAATAGCTATCAAGTGCATACTGATCATATTCAATGAT  200

seq1  ATAAAACTATTTTAAAAGAACTCTAATGCCATTTTACAGTGAAAAACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATTTTAAAAGAACTCTAATGCCATTTTACAGTGAAAAACCTT  250

seq1  CACACAAATCATTTTTTTTTCTGTTTTTATATGGTATTATTTTTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATCATTTTTTTTTCTGTTTTTATATGGTATTATTTTTTTAATT  300

seq1  TATTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATTCCAA  350

seq1  AAGTCCCCCGGACACCCCTCCCCCACTGCCCTACACACCCACTCCCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCGGACACCCCTCCCCCACTGCCCTACACACCCACTCCCACTT  400

seq1  CTTGGCCCTGGTGTTCCCCTGTACTGGGACATATAGAGTTTGCAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCTGGTGTTCCCCTGTACTGGGACATATAGAGTTTGCAAGACCA  450

seq1  AGGGGCCTCTCTTACCAATGATGGGCGACTAGGCCAACTTCTGATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTCTCTTACCAATGATGGGCGACTAGGCCAACTTCTGATACATA  500

seq1  TGCAGCTAGAGACACGAACTCAGGGAGTACTGGTTAGTTAGTATTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGAGACACGAACTCAGGGAGTACTGGTTAGTTAGTATTGTTGT  550

seq1  TCCACCTATAGGGTTGCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATAGGGTTGCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAG  600

seq1  CTCCTCCATTGGGGGCTCTGTGATCCATCCAATAGCTGACTGTGAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTGGGGGCTCTGTGATCCATCCAATAGCTGACTGTGAGCATC  650

seq1  CACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTTACAAGAGACAGCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTTACAAGAGACAGCTATA  700

seq1  TCAGGGTCCTTTCAGCAAAATCTTACTAGTGTATGCAATGGTGTCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCTTTCAGCAAAATCTTACTAGTGTATGCAATGGTGTCATTGT  750

seq1  TTGGAGGCTGATTATGGGATGGATCCCTGGGTATGGCAGTCTCTAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCTGATTATGGGATGGATCCCTGGGTATGGCAGTCTCTAGATGG  800

seq1  TCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACT-CCTTCCAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCCTTCCAT  850

seq1  GGGTGTAGCACAAATCATTTTTATAACTGAGTTTGCATTGTCCCCAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGCACAAATCATTTTTATAACTGAGTTTGCATTGTCCCCAAACT  900

seq1  GAAGCCAACCAGAAATCCTTCAACAGTGAAACTGTG-AAACACACAGCTG  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGCCAACCAGAAATCCTTCAACAGTGAAACTGTGAAAACACACAGCTG  950

seq1  CTGCTC-ACTAGTGATATGGGATGGAACATCTGCCCTCTGAGTTTCCATG  997
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAACTAGTGATATGGGATGGAACATCTGCCCTCTGAGTTTCCATG  1000

seq1  AGCTTCCT-GGTTTTCTTTTAAAAAGGTGGAGATCTTTTTTTTCCATTTT  1046
      |||||||| ||||||||||| |||||||||||||||||||||| |  |||
seq2  AGCTTCCTGGGTTTTCTTTT-AAAAGGTGGAGATCTTTTTTTTTCCATTT  1049

seq1  TTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  1096
      |||| ||| |||||||||||||||| ||||||||||||  |  |||||||
seq2  TTATAAGG-ATTTAGCTCATTTACA-TTCCAATGCTATTAC-GAAGTCCC  1096


seq1: chr3_124181966_124183001
seq2: B6Ng01-328K16.g_99_1116 (reverse)

seq1  GTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATATG  50
      |||| |||||||||  |||||||||     ||||  |||||   ||||||
seq2  GTAT-GGGGACTTT--GTATAGCAT---GCATGT--ATGAGGCTAATATG  42

seq1  TAATAAAAAAATGGAAAAAAAAAACGGCTGCTCAAGCCTTCTGAACTCAA  100
      | |||||||||||   ||||||||| ||||||||   | |||||||||||
seq2  T-ATAAAAAAATG---AAAAAAAAC-GCTGCTCA--GCGTCTGAACTCAA  85

seq1  GTCATCTTCTTACCTCAATCTCTCAAGGAGCTGGAATTACAATTATGTGT  150
      |||||| |||   |||||||||||||||||||||||||||||||||||||
seq2  GTCATC-TCT--ACTCAATCTCTCAAGGAGCTGGAATTACAATTATGTGT  132

seq1  CTACAAGTCAGGCTTAAAATTTTTGAAGTATACTCATGAAAATTAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTCAGGCTTAAAATTTTTGAAGTATACTCATGAAAATTAATATT  182

seq1  AATAAGTTGAAAAATAATAAAAGCCTAAATGCAGCTTTTAAAATGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTGAAAAATAATAAAAGCCTAAATGCAGCTTTTAAAATGTAGTT  232

seq1  GTATTTGTTAATTAAGAATGAATAAGAATGATGAAAAGTTTTGGTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTTAATTAAGAATGAATAAGAATGATGAAAAGTTTTGGTATCTA  282

seq1  AAATTTTAAGTGGTGAGATTACATGCTTATTAAAAACTGTCTTAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGTGGTGAGATTACATGCTTATTAAAAACTGTCTTAAAAATT  332

seq1  ACCACAGAGATTTACTGTTTTTTAAATTAGTTAATGAAAATATGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGATTTACTGTTTTTTAAATTAGTTAATGAAAATATGGAAACT  382

seq1  TTAAGGGCATTTGAAAAAAATCCTAAAAGCCTTGAAATTAATAGCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCATTTGAAAAAAATCCTAAAAGCCTTGAAATTAATAGCACTTT  432

seq1  TGGAAAGTATGCCATGCCTTTTATTCTTTAATGCAAAAGTCATGAAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTATGCCATGCCTTTTATTCTTTAATGCAAAAGTCATGAAGTGG  482

seq1  CTTTCTAAACATTGTAATCATCTACCATAGATTTTTTAAGTTATTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAACATTGTAATCATCTACCATAGATTTTTTAAGTTATTTTTTA  532

seq1  TTGCTATCATGAAACACCATGACCAAGGCACCTAAAAAAGAAAGAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCATGAAACACCATGACCAAGGCACCTAAAAAAGAAAGAATTAA  582

seq1  TTTTGAGTTCTCAGTTCTAGAGAGATAAGAGACCACTATCAAGTCAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTCTCAGTTCTAGAGAGATAAGAGACCACTATCAAGTCAGGGA  632

seq1  GGCGTGGCTGCAGAGAGTCATAGAAACAAGAGATGGAAGCTAAGAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCTGCAGAGAGTCATAGAAACAAGAGATGGAAGCTAAGAGCTCA  682

seq1  GAACTCACATGTTGAACCATAATTGAAGTAGAAAACAAACTGGGAATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACATGTTGAACCATAATTGAAGTAGAAAACAAACTGGGAATGAC  732

seq1  ACCTGGATTTTGAAACCTCAAAGTCTGTTCCCAGAGATGCACTTTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATTTTGAAACCTCAAAGTCTGTTCCCAGAGATGCACTTTCTCCA  782

seq1  GTAATGACACATACCCTATGCCTACCTCAATAAGGCCATGCACCTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGACACATACCCTATGCCTACCTCAATAAGGCCATGCACCTGAGAA  832

seq1  TAAATATTTTAATGGCTGAAACTATGGGGAACTGTCTTAGCCAATGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTAATGGCTGAAACTATGGGGAACTGTCTTAGCCAATGTGCT  882

seq1  ATTGCTGTGAAGAGACACCATGATGAGGGAAACTCATATAAAGGGAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGAAGAGACACCATGATGAGGGAAACTCATATAAAGGGAAGCA  932

seq1  TTAAATTAGGGATTGCTTATAGTTTCAAAGGCTTAATCCATTATCAGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGGGATTGCTTATAGTTTCAAAGGCTTAATCCATTATCAGTAT  982

seq1  AGTAGGAGGGAAGGTGGCCATCGGCCAAATGAGCAA  1036
      ||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGGGAAGGTGGCCATCGGCCAAATGAGCAA  1018


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