BAC Information

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BAC

Clone NameB6Ng01-329F09
Chromosome3 (Build37)
Map Location 77,319,140 - 77,469,798
singlet/doubletdoublet
Overlap geneDnmt3a-ps1
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329F09.bB6Ng01-329F09.g
ACCGA116327GA116328
length1,1661,032
definitionB6Ng01-329F09.b B6Ng01-329F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,319,140 - 77,320,309)(77,468,766 - 77,469,798)
sequence
gaattcagcattacaactttattttctacaagaatattagagttttgtaa
actgatttatattcctgtaaatcaaatttcttttttagggcatgttgatg
tcaaaatgtgtgtgtcaacttgccttcccaccacagatggaattcatttt
ctaaaaagaattaaaataccactatattaaaaaccaggactgtgatagtt
agctttattttcaacttatctaaacctagaaccacttggtgataaaattt
caattagagatagtctatacagaatttagtgtcttgaattaattaattga
tgtagaaagtaccctgaatgtgggcaaatcctctagtagcagcccaaata
attgaatgtggaagatggaaaatattctatttttgttcactaggcttcta
ctcttgctggtgagttcaacttttgtgttgttgccttggctgattgcttt
gataatattacaaccaacttttttggacttcaataacagagtaaagaaga
acaagtctcctgaaatcccatagtcctttagtaacaaattgagactactg
agacacctaacatggccttgtctcattaactaagcatctactagggggta
atcagtctgtcaagtgagagccattttgagctactctgaccatatcctgc
aaactattctgataaaaatctgttttaataaatgttaacatttttagaca
ttctctataccttactaatgcactctataatttgcataacagatgaagaa
ttacagaccactttttgaccactatcaaaaagactttggtgtcaccattt
ttaaagaaccttagtacaattggcagcatataatatgatgagattaaaat
agaatataatttcaagtccttgttttcctctagcttctgacatcataatt
agtttgattaaaatatttgcttttaaaaaaatccctcaattgggggcatt
tgcagggtggatttgacgcctagtgcaatgaaaactttctgtgtcagaag
ccatctagaaaaagattaaaggcatgcaagtgagattctggagatggccc
atcatttttgtgtggcctatgaaaaatgacctaacaatgcagttcttaaa
gacttcaaccaagaatgcttctgctgctgaaatgcccttttcggtcacat
atacatagccttgtaa

gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccaagtggtggcattaaaggcgtgtgccaccactgccaggct
tgctccaatattattaagaatatagcaagttcatcctttctacctcttgt
aatattggtgtcattaaattcattgttcatactctataattacccagtat
agtgatgatattttgaataattattaattaagaattagaaaagaaactat
tgtttatcattacttttatttctttgatcaacagtttttttgtttgtttg
tttttgtttcttgtttgttttattgttttgttttgttttgttttttaaac
agatattatatcagtgggaacaagtctatcttggactctttctccttttg
ggttgccttgtccatacttgatatgagggctttggccttggcttattcaa
ctttttttcataatgcttggctgtcttctttggaggcctgatgttttttt
tgaagagaaattcgatgggggagtgaatctggaggagaagtagctgggag
gaaccagagagaagggagagtgatgtcaggaagcattgcatgagaaagat
tctattttcaattaaataaaagaaaataacaaaataaattaaaatttaat
cttccatgctttttcattgacagagtccatgacacttattttaaattctt
tattaaattcttatcaaacctaaatttgtggattttcaattatgaaaata
cttcagtactacttttgcttttgtttcttttttgtccttaaaaacagagt
atttcattttctttaactcccttcctctctcaagactttcctaaaaagta
taatatgattctttccttgtttatttgtatttaaatccattttcttttat
aattgcaagattttaaattttttatgtaattaaatcagaatattttgtat
gtgtgcatgtatctacatattctctctctctctctctctctctgtatgtg
tgtgtgtgtgtggaggaagatccttcattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77319140_77320309
seq2: B6Ng01-329F09.b_42_1207

seq1  GAATTCAGCATTACAACTTTATTTTCTACAAGAATATTAGAGTTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTACAACTTTATTTTCTACAAGAATATTAGAGTTTTGTAA  50

seq1  ACTGATTTATATTCCTGTAAATCAAATTTCTTTTTTAGGGCATGTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTATATTCCTGTAAATCAAATTTCTTTTTTAGGGCATGTTGATG  100

seq1  TCAAAATGTGTGTGTCAACTTGCCTTCCCACCACAGATGGAATTCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGTGTGTGTCAACTTGCCTTCCCACCACAGATGGAATTCATTTT  150

seq1  CTAAAAAGAATTAAAATACCACTATATTAAAAACCAGGACTGTGATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAATTAAAATACCACTATATTAAAAACCAGGACTGTGATAGTT  200

seq1  AGCTTTATTTTCAACTTATCTAAACCTAGAACCACTTGGTGATAAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTTTCAACTTATCTAAACCTAGAACCACTTGGTGATAAAATTT  250

seq1  CAATTAGAGATAGTCTATACAGAATTTAGTGTCTTGAATTAATTAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAGATAGTCTATACAGAATTTAGTGTCTTGAATTAATTAATTGA  300

seq1  TGTAGAAAGTACCCTGAATGTGGGCAAATCCTCTAGTAGCAGCCCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAGTACCCTGAATGTGGGCAAATCCTCTAGTAGCAGCCCAAATA  350

seq1  ATTGAATGTGGAAGATGGAAAATATTCTATTTTTGTTCACTAGGCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGTGGAAGATGGAAAATATTCTATTTTTGTTCACTAGGCTTCTA  400

seq1  CTCTTGCTGGTGAGTTCAACTTTTGTGTTGTTGCCTTGGCTGATTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTGGTGAGTTCAACTTTTGTGTTGTTGCCTTGGCTGATTGCTTT  450

seq1  GATAATATTACAACCAACTTTTTTGGACTTCAATAACAGAGTAAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATTACAACCAACTTTTTTGGACTTCAATAACAGAGTAAAGAAGA  500

seq1  ACAAGTCTCCTGAAATCCCATAGTCCTTTAGTAACAAATTGAGACTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTCCTGAAATCCCATAGTCCTTTAGTAACAAATTGAGACTACTG  550

seq1  AGACACCTAACATGGCCTTGTCTCATTAACTAAGCATCTACTAGGGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTAACATGGCCTTGTCTCATTAACTAAGCATCTACTAGGGGGTA  600

seq1  ATCAGTCTGTCAAGTGAGAGCCATTTTGAGCTACTCTGACCATATCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTGTCAAGTGAGAGCCATTTTGAGCTACTCTGACCATATCCTGC  650

seq1  AAACTATTCTGATAAAAATCTGTTTTAATAAATGTTAACATTTTTAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTCTGATAAAAATCTGTTTTAATAAATGTTAACATTTTTAGACA  700

seq1  TTCTCTATACCTTACTAATGCACTCTATAATTTGCATAACAGATGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATACCTTACTAATGCACTCTATAATTTGCATAACAGATGAAGAA  750

seq1  TTACAGACCACTTTTTGACCACTATCAAAAAGACTTTGGTGTCACCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACCACTTTTTGACCACTATCAAAAAGACTTTGGTGTCACCATTT  800

seq1  TTAAAGAACCTTAGTACAATTGGCAGCATATAATATGATGAGATTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAACCTTAGTACAATTGGCAGCATATAATATGATGAGATTAAAAT  850

seq1  AGAATATAATTTCAAGTCCTTGTTTTCCTCTAGCTTCTGACATCATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAATTTCAAGTCCTTGTTTTCCTCTAGCTTCTGACATCATAATT  900

seq1  AGTTTGATTAAAATATTTGCTTTTAAAAAAATCCCTCAATTGGGGGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATTAAAATATTTGCTTTTAAAAAAATCCCTCAATTGGGGGCATT  950

seq1  TGCAGGGGTGGATTTGACGCCTAGTGCAATGAAAACTTTCTGTGTCAGAA  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-GGGTGGATTTGACGCCTAGTGCAATGAAAACTTTCTGTGTCAGAA  999

seq1  GCCATCTAG-AAAAGATTAAAGGCATGCAAGTGAGGATTCTGGAGATGGC  1049
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GCCATCTAGAAAAAGATTAAAGGCATGCAAGTGA-GATTCTGGAGATGGC  1048

seq1  CCATCA-TTTTGTGTGGCCTATGAAAAATGAACCCTAACAATGCAGGGTT  1098
      |||||| ||||||||||||||||||||||||  ||||||||||||  |||
seq2  CCATCATTTTTGTGTGGCCTATGAAAAATGA--CCTAACAATGCA--GTT  1094

seq1  CTTAAAGACTTCAACCAAGATTGCTTCTTGCTGCTGATATG-CCTTTTCT  1147
      |||||||||||||||||||| |||||| ||||||||| ||| ||||||| 
seq2  CTTAAAGACTTCAACCAAGAATGCTTC-TGCTGCTGAAATGCCCTTTTCG  1143

seq1  GTCACTATTACATAGCCTGGTAA  1170
      |||||   |||||||||| ||||
seq2  GTCACATATACATAGCCTTGTAA  1166


seq1: chr3_77468766_77469798
seq2: B6Ng01-329F09.g_63_1094 (reverse)

seq1  AATAATGAAGAATTTAACACACACACACACACACACATACAGAGAGAGAG  50
      |||||||||| || |  | | |||||||||||||||||||||||||||||
seq2  AATAATGAAGGATCTTCCTC-CACACACACACACACATACAGAGAGAGAG  49

seq1  AGAGAGAGAGAGAATATGTAGATACATGCACACATACAAAATATTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAATATGTAGATACATGCACACATACAAAATATTCTGAT  99

seq1  TTAATTACATAAAAAATTTAAAATCTTGCAATTATAAAAGAAAATGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACATAAAAAATTTAAAATCTTGCAATTATAAAAGAAAATGGATT  149

seq1  TAAATACAAATAAACAAGGAAAGAATCATATTATACTTTTTAGGAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAATAAACAAGGAAAGAATCATATTATACTTTTTAGGAAAGTC  199

seq1  TTGAGAGAGGAAGGGAGTTAAAGAAAATGAAATACTCTGTTTTTAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGGAAGGGAGTTAAAGAAAATGAAATACTCTGTTTTTAAGGAC  249

seq1  AAAAAAGAAACAAAAGCAAAAGTAGTACTGAAGTATTTTCATAATTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAACAAAAGCAAAAGTAGTACTGAAGTATTTTCATAATTGAAA  299

seq1  ATCCACAAATTTAGGTTTGATAAGAATTTAATAAAGAATTTAAAATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAATTTAGGTTTGATAAGAATTTAATAAAGAATTTAAAATAAGT  349

seq1  GTCATGGACTCTGTCAATGAAAAAGCATGGAAGATTAAATTTTAATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGACTCTGTCAATGAAAAAGCATGGAAGATTAAATTTTAATTTAT  399

seq1  TTTGTTATTTTCTTTTATTTAATTGAAAATAGAATCTTTCTCATGCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTCTTTTATTTAATTGAAAATAGAATCTTTCTCATGCAATG  449

seq1  CTTCCTGACATCACTCTCCCTTCTCTCTGGTTCCTCCCAGCTACTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACATCACTCTCCCTTCTCTCTGGTTCCTCCCAGCTACTTCTCC  499

seq1  TCCAGATTCACTCCCCCATCGAATTTCTCTTCAAAAAAAACATCAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCACTCCCCCATCGAATTTCTCTTCAAAAAAAACATCAGGCCT  549

seq1  CCAAAGAAGACAGCCAAGCATTATGAAAAAAAGTTGAATAAGCCAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAGACAGCCAAGCATTATGAAAAAAAGTTGAATAAGCCAAGGCC  599

seq1  AAAGCCCTCATATCAAGTATGGACAAGGCAACCCAAAAGGAGAAAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTCATATCAAGTATGGACAAGGCAACCCAAAAGGAGAAAGAGTC  649

seq1  CAAGATAGACTTGTTCCCACTGATATAATATCTGTTTAAAAAACAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGACTTGTTCCCACTGATATAATATCTGTTTAAAAAACAAAACA  699

seq1  AAACAAAACAATAAAACAAACAAGAAACAAAAACAAACAAACAAAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAATAAAACAAACAAGAAACAAAAACAAACAAACAAAAAAAC  749

seq1  TGTTGATCAAAGAAATAAAAGTAATGATAAACAATAGTTTCTTTTCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATCAAAGAAATAAAAGTAATGATAAACAATAGTTTCTTTTCTAAT  799

seq1  TCTTAATTAATAATTATTCAAAATATCATCACTATACTGGGTAATTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTAATAATTATTCAAAATATCATCACTATACTGGGTAATTATAG  849

seq1  AGTATGAACAATGAATTTAATGACACCAATATTACAAGAGGTAGAAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAACAATGAATTTAATGACACCAATATTACAAGAGGTAGAAAGGA  899

seq1  TGAACTTGCTATATTCTTAATAATATTGGAGCAAGCCTGGCAGTGGTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGCTATATTCTTAATAATATTGGAGCAAGCCTGGCAGTGGTGGC  949

seq1  ACACGCCTTTAATGCCACCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCTTTAATGCCACCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  999

seq1  GTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1032


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