BAC Information

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BAC

Clone NameB6Ng01-330B01
Chromosome3 (Build37)
Map Location 122,683,785 - 122,812,570
singlet/doubletdoublet
Overlap geneUsp53, Myoz2, Synpo2
Upstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330B01.bB6Ng01-330B01.g
ACCGA116846GA116847
length1,1931,028
definitionB6Ng01-330B01.b B6Ng01-330B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,683,785 - 122,685,003)(122,811,544 - 122,812,570)
sequence
gaattcacagatggaagtggctgctcattcctactaactcagcactaaga
aggctaaaatatactaaggaggctaaagcattgggtttgaagccagctta
ggctacagagcaaattccagagcataccgaattatagaaaaattttgtct
caaaacgtgacccatccaaaaaagaaaaatttctgacatgattatctaac
actttactaatatttgaatctctagtatctagtacacagaatatgtttta
aaaggtttactaagaaaaacctgctaacccaaagaacacaaatgctaagt
tagaaacagtattcttgggactagagatggctgagaagttaagaatggtt
gttactttcccagaggatccacatttgattcctagcacccgcagggcagt
gcagaattgtctgtaactccagtctcaggtgatctgcctctggcctctat
gggtagcaggcacacagatggtacagacatataggcgaaatacccatcca
acaagaaaaaaacaacaaaatacaataatgttccttaaaactttccccac
ctttaattctttttttactgctcaatatgataaacttcatactatcacaa
agatgtcatgctatctcagatatttatttactagtgtaattaaagttagg
gctgaggttctcatagctctgtggtcacagcactggcctactatactatg
ggcaaggcccatgaccaaattcaatgaccagcaccaaaacacacacacac
acacacacacacacacacacacacactggcacacgtaaagctttgaaagg
taggacagtgaaaggtttacataaaattttactttccagaatacaaatat
gaatacatgaggcaatttgagccctgtggactcttcctgtggcccaatac
aggctcctctgatagcatttttaaaaagaaaaatgttacaaaaaaaaaaa
aatcagccacacagaaaagcaatttaaattaagatgtgattctaagccta
tatagtacacctataatctcagggctgggagactgaggaggaggatacaa
actggagtaactagctacacagaagacacagttacataaataacaaatat
agccaacactacattctgtcatgacacttaagaaattgcatacaaactgg
gtgaagttgtgtggcatcttataacgaaagaccctcaattact
gaattctggctccaactgctgctccgtccacggttaaatctgagtcctgg
ctttactttaggcaaaggttggtggggtcgttggttggctggatggggag
tttagaaaaaacagtttcttttttttttttctttcctttttattctctgt
tggttggttttgcttgctccttccctcttcctttcacctttgttaactca
cgaagtccatttctgttgtcaacaacagtgataatgaatccccgagggtg
ccttgtgttgagtacctgaagatctatacccagagggatccactgcatgc
tttatccactgagggaatcccagccacaactgaaggactgtgctaaattt
tccttccgagaggctcaagcctcccgtcccagcaggaacaaggcgctgtg
agcacacaatatgaagattccaggaggcaggcaggtagcatggaaataca
agcccagcatttgcccctgtttttggggggaactacattgacaccataac
ctaagaacactcactagcctatctctaatacttcgatcataaacaagttc
tattttgagagtagctaatacacagtgtatgtatttagactatccactgt
cacattttttagagctatgttttatcttgcacatttggatgatcattctc
gaactcgtaaactgctattatgtacagtgattgttgacaataccacgtgt
caacaatcccatttaatatgcacaagaagaaactaattgtaagcaggggg
aaacacgtctaagctatagctagttatgtaacataagctggcgtctttta
ttctagagcagtggttctcaaaccttcctaatgctgcgaacctttataca
gttcctcatgctgtggtgactccccaaccataaaattattttgttgctac
ttcattagctgtaattctggctactgttatggatttaatgttaaaatata
tgatatgcagcatatctgaatatgcgaccctgtgaaaggtttcttggaat
ccccccagttggaaacgctcttcgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122683785_122685003
seq2: B6Ng01-330B01.b_46_1238

seq1  GAATTCACAGATGGAAGTGGCTGCTCATTCCTACTAACTCAGCACTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATGGAAGTGGCTGCTCATTCCTACTAACTCAGCACTAAGA  50

seq1  AGGCTAAAATATACTAAGGAGGCTAAAGCATTGGGTTTGAAGCCAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAATATACTAAGGAGGCTAAAGCATTGGGTTTGAAGCCAGCTTA  100

seq1  GGCTACAGAGCAAATTCCAGAGCATACCGAATTATAGAAAAATTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGCAAATTCCAGAGCATACCGAATTATAGAAAAATTTTGTCT  150

seq1  CAAAACGTGACCCATCCAAAAAAGAAAAATTTCTGACATGATTATCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTGACCCATCCAAAAAAGAAAAATTTCTGACATGATTATCTAAC  200

seq1  ACTTTACTAATATTTGAATCTCTAGTATCTAGTACACAGAATATGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTAATATTTGAATCTCTAGTATCTAGTACACAGAATATGTTTTA  250

seq1  AAAGGTTTACTAAGAAAAACCTGCTAACCCAAAGAACACAAATGCTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTACTAAGAAAAACCTGCTAACCCAAAGAACACAAATGCTAAGT  300

seq1  TAGAAACAGTATTCTTGGGACTAGAGATGGCTGAGAAGTTAAGAATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAGTATTCTTGGGACTAGAGATGGCTGAGAAGTTAAGAATGGTT  350

seq1  GTTACTTTCCCAGAGGATCCACATTTGATTCCTAGCACCCGCAGGGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTCCCAGAGGATCCACATTTGATTCCTAGCACCCGCAGGGCAGT  400

seq1  GCAGAATTGTCTGTAACTCCAGTCTCAGGTGATCTGCCTCTGGCCTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTGTCTGTAACTCCAGTCTCAGGTGATCTGCCTCTGGCCTCTAT  450

seq1  GGGTAGCAGGCACACAGATGGTACAGACATATAGGCGAAATACCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAGGCACACAGATGGTACAGACATATAGGCGAAATACCCATCCA  500

seq1  ACAAGAAAAAAACAACAAAATACAATAATGTTCCTTAAAACTTTCCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAAACAACAAAATACAATAATGTTCCTTAAAACTTTCCCCAC  550

seq1  CTTTAATTCTTTTTTTACTGCTCAATATGATAAACTTCATACTATCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTTTTTTTACTGCTCAATATGATAAACTTCATACTATCACAA  600

seq1  AGATGTCATGCTATCTCAGATATTTATTTACTAGTGTAATTAAAGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCATGCTATCTCAGATATTTATTTACTAGTGTAATTAAAGTTAGG  650

seq1  GCTGAGGTTCTCATAGCTCTGTGGTCACAGCACTGGCCTACTATACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTTCTCATAGCTCTGTGGTCACAGCACTGGCCTACTATACTATG  700

seq1  GGCAAGGCCCATGACCAAATTCAATGACCAGCACCAAAACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCCCATGACCAAATTCAATGACCAGCACCAAAACACACACACAC  750

seq1  ACACACACACACACACACACACACACTGGCACACGTAAAGCTTTGAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACTGGCACACGTAAAGCTTTGAAAGG  800

seq1  TAGGACAGTG-AAGGTTTACATAAAATTTTACTTTCCAGAATACAAATAT  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTGAAAGGTTTACATAAAATTTTACTTTCCAGAATACAAATAT  850

seq1  GAATACATGAGGCAATTTGAGCCCTGTGGACTCTTCCTGTGGCCCAATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATGAGGCAATTTGAGCCCTGTGGACTCTTCCTGTGGCCCAATAC  900

seq1  AGGCTCCTCTGATAGCATTTTTTAAAAAGAAAAATGTTAC-AAAAAAAAA  948
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AGGCTCCTCTGATAGCA-TTTTTAAAAAGAAAAATGTTACAAAAAAAAAA  949

seq1  AAATCAGCCACACAGAAAAGCAA-TTAAATTAAGATGTGATTCTAAGCCT  997
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  AAATCAGCCACACAGAAAAGCAATTTAAATTAAGATGTGATTCTAAGCC-  998

seq1  TATATAGTACACCTATAATCTCAGGGCTTGGGAGACTGAAGGAGGAGGAT  1047
      ||||||||||||||||||||||||||| |||||||||| |||||||||| 
seq2  TATATAGTACACCTATAATCTCAGGGC-TGGGAGACTG-AGGAGGAGGA-  1045

seq1  TACAAACTGGAGGTTAACCTAGGCTACACAGGAAGACAACCAAGTACATA  1097
      ||||||||||||  ||| ||| |||||||| |||||||  ||  ||||||
seq2  TACAAACTGGAG--TAA-CTA-GCTACACA-GAAGACA--CAGTTACATA  1088

seq1  AATAACAAAATTATAGGCAAACACTACATTTCTTGTCATGGACCACTAAG  1147
      |||||||||  |||| || |||||||||||   |||||| |||   ||||
seq2  AATAACAAA--TATA-GCCAACACTACATT--CTGTCAT-GACACTTAAG  1132

seq1  AAATTGGCATACAAATACGTGTGTGTGAGTGTGTGT-GATTCTTATTAAA  1196
      ||||| |||||||||      || ||||   ||||| |  ||||| ||| 
seq2  AAATT-GCATACAAA-----CTGGGTGAAGTTGTGTGGCATCTTA-TAAC  1175

seq1  AAAAGAGAAAGAACTCAATTACT  1219
       |||||       ||||||||||
seq2  GAAAGA-----CCCTCAATTACT  1193

seq1: chr3_122811544_122812570
seq2: B6Ng01-330B01.g_66_1093 (reverse)

seq1  AACCAGAAGAGCCGTTCCCAACTTGGGGGA-TCCAAGAACCCTTTCACAG  49
      |||| |||||| |||| |||||| |||||| |||||||| ||||||||| 
seq2  AACCCGAAGAG-CGTTTCCAACTGGGGGGATTCCAAGAAACCTTTCACA-  48

seq1  GGGTCGCATA-TCAGATATGCTGCATATCATATATTTT-ACATTAAAATC  97
      |||||||||| ||||||||||||||||||||||||||| ||||| |||||
seq2  GGGTCGCATATTCAGATATGCTGCATATCATATATTTTAACATT-AAATC  97

seq1  CATAACAGTAGCCAGAATTACAGCT-ATGAAGTAGCAACAAAATAATTTT  146
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATAACAGTAGCCAGAATTACAGCTAATGAAGTAGCAACAAAATAATTTT  147

seq1  ATGGTTGGGGAGTCACCACAGCATGAGGAACTGTATAAAGGTTCGCAGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGGGAGTCACCACAGCATGAGGAACTGTATAAAGGTTCGCAGCA  197

seq1  TTAGGAAGGTTTGAGAACCACTGCTCTAGAATAAAAGACGCCAGCTTATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGGTTTGAGAACCACTGCTCTAGAATAAAAGACGCCAGCTTATG  247

seq1  TTACATAACTAGCTATAGCTTAGACGTGTTTCCCCCTGCTTACAATTAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAACTAGCTATAGCTTAGACGTGTTTCCCCCTGCTTACAATTAGT  297

seq1  TTCTTCTTGTGCATATTAAATGGGATTGTTGACACGTGGTATTGTCAACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTGCATATTAAATGGGATTGTTGACACGTGGTATTGTCAACA  347

seq1  ATCACTGTACATAATAGCAGTTTACGAGTTCGAGAATGATCATCCAAATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTACATAATAGCAGTTTACGAGTTCGAGAATGATCATCCAAATG  397

seq1  TGCAAGATAAAACATAGCTCTAAAAAATGTGACAGTGGATAGTCTAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATAAAACATAGCTCTAAAAAATGTGACAGTGGATAGTCTAAATA  447

seq1  CATACACTGTGTATTAGCTACTCTCAAAATAGAACTTGTTTATGATCGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTGTGTATTAGCTACTCTCAAAATAGAACTTGTTTATGATCGAA  497

seq1  GTATTAGAGATAGGCTAGTGAGTGTTCTTAGGTTATGGTGTCAATGTAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGAGATAGGCTAGTGAGTGTTCTTAGGTTATGGTGTCAATGTAGT  547

seq1  TCCCCCCAAAAACAGGGGCAAATGCTGGGCTTGTATTTCCATGCTACCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCAAAAACAGGGGCAAATGCTGGGCTTGTATTTCCATGCTACCTG  597

seq1  CCTGCCTCCTGGAATCTTCATATTGTGTGCTCACAGCGCCTTGTTCCTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCTGGAATCTTCATATTGTGTGCTCACAGCGCCTTGTTCCTGC  647

seq1  TGGGACGGGAGGCTTGAGCCTCTCGGAAGGAAAATTTAGCACAGTCCTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACGGGAGGCTTGAGCCTCTCGGAAGGAAAATTTAGCACAGTCCTTC  697

seq1  AGTTGTGGCTGGGATTCCCTCAGTGGATAAAGCATGCAGTGGATCCCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGCTGGGATTCCCTCAGTGGATAAAGCATGCAGTGGATCCCTCT  747

seq1  GGGTATAGATCTTCAGGTACTCAACACAAGGCACCCTCGGGGATTCATTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAGATCTTCAGGTACTCAACACAAGGCACCCTCGGGGATTCATTA  797

seq1  TCACTGTTGTTGACAACAGAAATGGACTTCGTGAGTTAACAAAGGTGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGTTGACAACAGAAATGGACTTCGTGAGTTAACAAAGGTGAAA  847

seq1  GGAAGAGGGAAGGAGCAAGCAAAACCAACCAACAGAGAATAAAAAGGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGAAGGAGCAAGCAAAACCAACCAACAGAGAATAAAAAGGAAA  897

seq1  GAAAAAAAAAAAAGAAACTGTTTTTTCTAAACTCCCCATCCAGCCAACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAGAAACTGTTTTTTCTAAACTCCCCATCCAGCCAACCA  947

seq1  ACGACCCCACCAACCTTTGCCTAAAGTAAAGCCAGGACTCAGATTTAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCCACCAACCTTTGCCTAAAGTAAAGCCAGGACTCAGATTTAACC  997

seq1  GTGGACGGAGCAGCAGTTGGAGCCAGAATTC  1027
      |||||||||||||||||||||||||||||||
seq2  GTGGACGGAGCAGCAGTTGGAGCCAGAATTC  1028