BAC Information

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BAC

Clone NameB6Ng01-330I11
Chromosome3 (Build37)
Map Location 113,651,191 - 113,755,571
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330I11.bB6Ng01-330I11.g
ACCGA117167GA117168
length322619
definitionB6Ng01-330I11.b B6Ng01-330I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,755,244 - 113,755,571)(113,651,191 - 113,651,806)
sequence
catggttcaagcaactctgatgcttaaattccttcagtgaaccccactga
cttccagatggcatccacattccacattccttgcatagaccttcttgatg
cccaattttcctcctagtttcaatcccccaccccatcccagagcatgtct
attctaatattcactgtcccagaaacactaccacagtcagtgctatagaa
atactagttgggacttaaaaggaatacatcaaacatttttgtctacttca
ggaatatatatataatttggatatatatatatatatatatatatatatat
atatatatatatatatatatat

gaattcaatatcacgtttttgttttcacataaggaaaagctgtagaaatg
ttatatctagaccaaaggaataccgtcttcatggtctttattacactgga
ttttatggtaaaattagcaaatcagaagaaataaactttggcaagagatg
cctgttttgttcactctaaacttaaatgagaattctgattttactcagat
ctctgctccttgtttttaatccatgttaaatgagcagaactaattatccc
atgactgttcagatgtattcaaagtgtggttggctttgtaccatcctcta
catcttgttatatgtattattctcaaaccttaaaaaaatagaagaaaaaa
atcaaaataaagtaaaaatcaagaaagtagtatatcttgactcatttaga
attgagagaacaagtctctctttctctttgtgtgtgtgtgtgtgtgtgta
tgtgtgtttatgcatgtgtgtcttgttttctctttcacgctcattctctc
cctgcttttttcttccctttctccatcaaggtgtccttatttatttagat
ctaggtagcttaggaatctttagtatccaagctggcccccaaaacaataa
cttcagtctttggctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113755244_113755571
seq2: B6Ng01-330I11.b_46_373 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATCCAAATTATATATATATTCCTGAAGTAGACAAAAATGTTTGATGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTATATATATATTCCTGAAGTAGACAAAAATGTTTGATGTATT  100

seq1  CCTTTTAAGTCCCAACTAGTATTTCTATAGCACTGACTGTGGTAGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAGTCCCAACTAGTATTTCTATAGCACTGACTGTGGTAGTGTTT  150

seq1  CTGGGACAGTGAATATTAGAATAGACATGCTCTGGGATGGGGTGGGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGTGAATATTAGAATAGACATGCTCTGGGATGGGGTGGGGGAT  200

seq1  TGAAACTAGGAGGAAAATTGGGCATCAAGAAGGTCTATGCAAGGAATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAGGAGGAAAATTGGGCATCAAGAAGGTCTATGCAAGGAATGTG  250

seq1  GAATGTGGATGCCATCTGGAAGTCAGTGGGGTTCACTGAAGGAATTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGATGCCATCTGGAAGTCAGTGGGGTTCACTGAAGGAATTTAAG  300

seq1  CATCAGAGTTGCTTGAACCATGGAATTC  328
      ||||||||||||||||||||||||||||
seq2  CATCAGAGTTGCTTGAACCATGGAATTC  328


seq1: chr3_113651191_113651806
seq2: B6Ng01-330I11.g_65_683

seq1  GAATTCAATATCACGTTTTTGTTTTCACATAAGGAAAAGCTGTAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCACGTTTTTGTTTTCACATAAGGAAAAGCTGTAGAAATG  50

seq1  TTATATCTAGACCAAAGGAATACCGTCTTCATGGTCTTTATTACACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTAGACCAAAGGAATACCGTCTTCATGGTCTTTATTACACTGGA  100

seq1  TTTTATGGTAAAATTAGCAAATCAGAAGAAATAAACTTTGGCAAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTAAAATTAGCAAATCAGAAGAAATAAACTTTGGCAAGAGATG  150

seq1  CCTGTTTTGTTCACTCTAAACTTAAATGAGAATTCTGATTTTACTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGTTCACTCTAAACTTAAATGAGAATTCTGATTTTACTCAGAT  200

seq1  CTCTGCTCCTTGTTTTTAATCCATGTTAAATGAGCAGAACTAATTATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCCTTGTTTTTAATCCATGTTAAATGAGCAGAACTAATTATCCC  250

seq1  ATGACTGTTCAGATGTATTCAAAGTGTGGTTGGCTTTGTACCATCCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTTCAGATGTATTCAAAGTGTGGTTGGCTTTGTACCATCCTCTA  300

seq1  CATCTTGTTATATGTATTATTCTCAAACCTTAAAAAAATAGAAGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTATATGTATTATTCTCAAACCTTAAAAAAATAGAAGAAAAAA  350

seq1  ATCAAAATAAAGTAAAAATCAAGAAAGTAGTATATCTTGACTCATTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAAAGTAAAAATCAAGAAAGTAGTATATCTTGACTCATTTAGA  400

seq1  ATTGAGAGAACAAGTCTCTCTTTCTCTTTGTGTGTGTGTGTGTGTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGAACAAGTCTCTCTTTCTCTTTGTGTGTGTGTGTGTGTGTGTA  450

seq1  TGTGTGTTTATGCATGTGTGTCTTGTTTTCTCTTTCACGCTCATTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTATGCATGTGTGTCTTGTTTTCTCTTTCACGCTCATTCTCTC  500

seq1  CCTGCTTTTTTCTTCCCTTTCTCCATCAAGGTGTCCTTATTTATTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTTTCTTCCCTTTCTCCATCAAGGTGTCCTTATTTATTTAGAT  550

seq1  CTAGGTAGCTTAGGAATCTTTAGTATCCAAGCTGGCCCC--AAACAATAG  598
      |||||||||||||||||||||||||||||||||||||||  |||||||| 
seq2  CTAGGTAGCTTAGGAATCTTTAGTATCCAAGCTGGCCCCCAAAACAATAA  600

seq1  CTTCAGTC-TTGGCTAAGA  616
      |||||||| ||||||||||
seq2  CTTCAGTCTTTGGCTAAGA  619


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