BAC Information

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BAC

Clone NameB6Ng01-331M10
Chromosome3 (Build37)
Map Location 73,480,527 - 73,615,909
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M10.bB6Ng01-331M10.g
ACCGA118056GA118057
length9961,150
definitionB6Ng01-331M10.b B6Ng01-331M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,480,527 - 73,481,111)(73,614,746 - 73,615,909)
sequence
gaattctctaagtcttaattttatcttgtttgtttatctggagaaacctt
gcttggactggccttgagctactgtataacaaccactctgtagactacat
attgggaaaatatcttcaccgccctacatctgacagcaagttaatatcca
aagtaaacaatgaacttaagaagttaaacacacacacacaaataaatgtt
aaaatggaatacagagtgaaacaaataattctcaacatagtaatctctaa
tgcctgagaagcaagggggaaaaggactgaagccctaagggccagcagaa
agaatggaaacaggcaacctcaggagataggaggttggggagggtccctc
cagaaggaaccagaaacgtgggaggggagagtttctcaggacttaaaggg
agggaacttagatgaaatgccctacagtagggagagggaacttgtggagc
ccatctccagcaggaagacagagcatcgactgaggggagttgctatccca
gagtcacaaatttgacatataattgttccattctgaaagaactgcaggga
tggaaatagagacaagcctgaggaaaagaatatccagtgacaggcccaaa
gtggaatccagctcaagtagaggccccaaggcctgacactattactgagg
ctatggagtgctcacaaaaagggatctaacatgactgtcctctgaaagac
ccaacaaggaactgaaagagtcagatgcagatatttgaacccaaccaatg
taataaggcggctgatacctgtggatgaattagggaaaagctggaagaag
ctgaggaggagggcgaccctgtaggaggaccagcagtatcaaattagtcc
tggaccccccagatctctcagacactggacccaccaactaggtagcatac
accagcagatatgagaccccaacacatatacagcagaggaatgctgagtc
tgggttcaattcaaagaaggatgcaacttaaccctcaagagactgg

gaattctgtctaaaacaccatcttgtaagatcttatatttttcatgtaat
attctgaatagctgttctatcaatttatttttcaatattgaaatatcgat
attgaatttagttttaatgattttctattctgtcagtatttatgtgttaa
tttattttctctttctgttttcaactttaatatgttctttctgggtatga
acattctgtagcttgttctttctatgtctcttaagggaccaacaaaagta
ttactgcttttcatcagatttgagaatttgtctcccatacatgtttttaa
ttgcctttcgcgtcttctaatatttcattgtgtttatttagtattgcttt
tcttttacattcttggtcttttaattattttatagatcataattttagta
gagtatttttataatatgcttaaagttttgcagaattgtagttttctttt
cttccttgctttttaaaaatagaacctccatgctgaactcaattgttctg
catttgtcagtatgtcgtgcagtttgcaacagtctttcttcctaaacttc
agtttggatttacatgcataaattacaatgtctgatttcaaagttcttga
ggatggttttcttctttgcctttggcactcttcgcacttcttacaattca
tgaagatagaaaatttaaacctattgtattagttagggttctctagagtc
acagaaattatgggtgatctctatatagtaaaggaatttattgatgactt
acagtctgtagtccaactcccaacaatgttcagcagcagctgtaaatgga
agtccaaggatttagcagttgctcagtctcacaagggaagcaagagaaga
gataaagtgtaaatcttaattcttccaatgtccttatgcaggtcaacagc
agaagatatagcccagattaaggtgtgtgccaccatgcctataatcccag
atgaccttgaactcagaggtatccagccttaatctctggaatcatagcca
ctatgcctcagactccatgccaagatccagggtcagaaactgctcacccc
cagattaggatcactggtgagtcttcattctggatattgtcaattcaaat
atagcaggtggaaaaccagaaaaatgcactaaggtatcgttaacaagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73480527_73481111
seq2: B6Ng01-331M10.b_51_635

seq1  GAATTCTCTAAGTCTTAATTTTATCTTGTTTGTTTATCTGGAGAAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGTCTTAATTTTATCTTGTTTGTTTATCTGGAGAAACCTT  50

seq1  GCTTGGACTGGCCTTGAGCTACTGTATAACAACCACTCTGTAGACTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACTGGCCTTGAGCTACTGTATAACAACCACTCTGTAGACTACAT  100

seq1  ATTGGGAAAATATCTTCACCGCCCTACATCTGACAGCAAGTTAATATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAATATCTTCACCGCCCTACATCTGACAGCAAGTTAATATCCA  150

seq1  AAGTAAACAATGAACTTAAGAAGTTAAACACACACACACAAATAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACAATGAACTTAAGAAGTTAAACACACACACACAAATAAATGTT  200

seq1  AAAATGGAATACAGAGTGAAACAAATAATTCTCAACATAGTAATCTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAATACAGAGTGAAACAAATAATTCTCAACATAGTAATCTCTAA  250

seq1  TGCCTGAGAAGCAAGGGGGAAAAGGACTGAAGCCCTAAGGGCCAGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGAAGCAAGGGGGAAAAGGACTGAAGCCCTAAGGGCCAGCAGAA  300

seq1  AGAATGGAAACAGGCAACCTCAGGAGATAGGAGGTTGGGGAGGGTCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAAACAGGCAACCTCAGGAGATAGGAGGTTGGGGAGGGTCCCTC  350

seq1  CAGAAGGAACCAGAAACGTGGGAGGGGAGAGTTTCTCAGGACTTAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAACCAGAAACGTGGGAGGGGAGAGTTTCTCAGGACTTAAAGGG  400

seq1  AGGGAACTTAGATGAAATGCCCTACAGTAGGGAGAGGGAACTTGTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTTAGATGAAATGCCCTACAGTAGGGAGAGGGAACTTGTGGAGC  450

seq1  CCATCTCCAGCAGGAAGACAGAGCATCGACTGAGGGGAGTTGCTATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCAGCAGGAAGACAGAGCATCGACTGAGGGGAGTTGCTATCCCA  500

seq1  GAGTCACAAATTTGACATATAATTGTTCCATTCTGAAAGAACTGCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAAATTTGACATATAATTGTTCCATTCTGAAAGAACTGCAGGGA  550

seq1  TGGAAATAGAGACAAGCCTGAGGAAAAGAATATCC  585
      |||||||||||||||||||||||||||||||||||
seq2  TGGAAATAGAGACAAGCCTGAGGAAAAGAATATCC  585


seq1: chr3_73614746_73615909
seq2: B6Ng01-331M10.g_70_1219 (reverse)

seq1  AGACTTGTTAAAACGTAACTGTAGTGGCTATTTCTGGTTTTCAACTTGCC  50
      |||||||||  ||||  ||  |||||  | |||||||||||| || || |
seq2  AGACTTGTT--AACGATACCTTAGTGCATTTTTCTGGTTTTCCACCTG-C  47

seq1  TATATTTGGAATGAACAATAATCCAGAATTGGAAGACTCACCAGTGATCC  100
      ||||||| ||||  ||||| |||||||||  |||||||||||||||||||
seq2  TATATTT-GAATTGACAAT-ATCCAGAAT--GAAGACTCACCAGTGATCC  93

seq1  TAATCTGGGGGTTGAGGCAAGTTTCTGA-CCTGGATCTTGGCATGGAGTT  149
      ||||||||||| ||||   ||||||||| |||||||||||||||||||| 
seq2  TAATCTGGGGG-TGAG--CAGTTTCTGACCCTGGATCTTGGCATGGAGT-  139

seq1  CTTGAGGCATAGTGGCTATGATTCCAGAAGATTAAGGCTGGGATACCTCT  199
        ||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  -CTGAGGCATAGTGGCTATGATTCCAG-AGATTAAGGCT-GGATACCTCT  186

seq1  GAGTTCAAGGTCATCTGGGATTATAGGCATGGTGGCACACACCTTTAATC  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGTTCAAGGTCATCTGGGATTATAGGCATGGTGGCACACACC-TTAATC  235

seq1  TGGGCTATATCTTCTGCTGTTGACCTGCATAAGGACATTGGAAGAATTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATATCTTCTGCTGTTGACCTGCATAAGGACATTGGAAGAATTAA  285

seq1  GATTTACACTTTATCTCTTCTCTTGCTTCCCTTGTGAGACTGAGCAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACACTTTATCTCTTCTCTTGCTTCCCTTGTGAGACTGAGCAACTG  335

seq1  CTAAATCCTTGGACTTCCATTTACAGCTGCTGCTGAACATTGTTGGGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCTTGGACTTCCATTTACAGCTGCTGCTGAACATTGTTGGGAGT  385

seq1  TGGACTACAGACTGTAAGTCATCAATAAATTCCTTTACTATATAGAGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACAGACTGTAAGTCATCAATAAATTCCTTTACTATATAGAGATC  435

seq1  ACCCATAATTTCTGTGACTCTAGAGAACCCTAACTAATACAATAGGTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAATTTCTGTGACTCTAGAGAACCCTAACTAATACAATAGGTTTA  485

seq1  AATTTTCTATCTTCATGAATTGTAAGAAGTGCGAAGAGTGCCAAAGGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTATCTTCATGAATTGTAAGAAGTGCGAAGAGTGCCAAAGGCAA  535

seq1  AGAAGAAAACCATCCTCAAGAACTTTGAAATCAGACATTGTAATTTATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACCATCCTCAAGAACTTTGAAATCAGACATTGTAATTTATGC  585

seq1  ATGTAAATCCAAACTGAAGTTTAGGAAGAAAGACTGTTGCAAACTGCACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATCCAAACTGAAGTTTAGGAAGAAAGACTGTTGCAAACTGCACG  635

seq1  ACATACTGACAAATGCAGAACAATTGAGTTCAGCATGGAGGTTCTATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGACAAATGCAGAACAATTGAGTTCAGCATGGAGGTTCTATTTT  685

seq1  TAAAAAGCAAGGAAGAAAAGAAAACTACAATTCTGCAAAACTTTAAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAGGAAGAAAAGAAAACTACAATTCTGCAAAACTTTAAGCAT  735

seq1  ATTATAAAAATACTCTACTAAAATTATGATCTATAAAATAATTAAAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATACTCTACTAAAATTATGATCTATAAAATAATTAAAAGAC  785

seq1  CAAGAATGTAAAAGAAAAGCAATACTAAATAAACACAATGAAATATTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTAAAAGAAAAGCAATACTAAATAAACACAATGAAATATTAGA  835

seq1  AGACGCGAAAGGCAATTAAAAACATGTATGGGAGACAAATTCTCAAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCGAAAGGCAATTAAAAACATGTATGGGAGACAAATTCTCAAATCT  885

seq1  GATGAAAAGCAGTAATACTTTTGTTGGTCCCTTAAGAGACATAGAAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAGCAGTAATACTTTTGTTGGTCCCTTAAGAGACATAGAAAGAA  935

seq1  CAAGCTACAGAATGTTCATACCCAGAAAGAACATATTAAAGTTGAAAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACAGAATGTTCATACCCAGAAAGAACATATTAAAGTTGAAAACA  985

seq1  GAAAGAGAAAATAAATTAACACATAAATACTGACAGAATAGAAAATCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAAATAAATTAACACATAAATACTGACAGAATAGAAAATCATT  1035

seq1  AAAACTAAATTCAATATCGATATTTCAATATTGAAAAATAAATTGATAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAATTCAATATCGATATTTCAATATTGAAAAATAAATTGATAGA  1085

seq1  ACAGCTATTCAGAATATTACATGAAAAATATAAGATCTTACAAGATGGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTCAGAATATTACATGAAAAATATAAGATCTTACAAGATGGTG  1135

seq1  TTTTAGACAGAATTC  1164
      |||||||||||||||
seq2  TTTTAGACAGAATTC  1150


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