BAC Information

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BAC

Clone NameB6Ng01-333D10
Chromosome3 (Build37)
Map Location 90,087,000 - 90,186,104
singlet/doubletdoublet
Overlap geneGatad2b
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneSlc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D10.bB6Ng01-333D10.g
ACCGA119090GA119091
length9921,047
definitionB6Ng01-333D10.b B6Ng01-333D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,087,000 - 90,087,988)(90,185,058 - 90,186,104)
sequence
gaattccttagctatcaggcaaactgaggcctagagagctgtattgaggg
ctaagatatggccaaattacctgactcaacttctcttcccagattttggc
gaatacaggctgaagggtaaaagatttgaagtgtatctttgtctattgca
agtcagacgagttctgctgtgtctcagcttgtgttcatgtgcaaataatg
ggggtgaggctaattcatctttcttgtttgtttgttttttgagataaggt
ttctctgtataacagccctggcagtcaatttatagaccaggctggtcttg
aactctcagagatcttcttggttccgcctcctgataggattaaagtcctg
ggtcaccatagcctgtgatgtttgtcatttaaggaacaattctttaattt
ttttaggcctggttgtacagacctgtattccagaggctgggtaggaggat
tacaagtttttaggcgcatcaagctagtctgggtatcttagtacaactct
tgcttcaaataaaataaaaccacaaaacaactttaaagagggctatggta
tagcttagtttaatctcctataccagataatctataggaaatgctaagtg
tgataaaatgcatttgtttcttgggatggagagatggctgagtgattaag
aagacccaggtttgggccgggcgtggtggcgcatgcctttaatcccagca
ctcgggaggcagaggcaggaggattttctgagttcgaggccagcctggtc
tacaaagtgagttccaggacagccagggctacacagagaaaccctgtctc
gaaaaaaaccaaataaaaaaaaaaaaaaaaaaaaagacccaggtttgggt
tctcagcacccatacagtacctcacatccatgaccaggggaatctaggtc
tcagaggaacatacacttaactctttttaaaaataattaatttttttttt
agataaaaaaatgggtggttctagggttctagcagatggctc
gaattcagttttcaatgtcttcaagcaaagacacagccaccatcatctgt
gtaagtttgtctgcgaatgcttgtatgatacatgggactaagacttcagg
gcctgcagagcttcactgtttagaagtagccttgacattttcctagctcc
ggtgcctcatccctcccgacctcctccgactggaagatttcagtcaccct
ggagtgactgccaggagcctcctcctagtctgacctgcccgctcaaggcc
aggatcactgcgcaagcgcgggcagcaggcaccgcaagaatggctggtct
tggagtccttttgcccacatttgataaatgataagacagggtactctcct
gactgtgcagcctcccctacctcagctggccctaaaactgaaagatgaat
ggatggcgggacccatgagcctggcttctcgtccaggggtctttaggggc
taaagatgcagatgcagcatttctttgtgggagtgagctgggacctcagg
cctcaggaatgtacacaggtgttcactgagcactgtccccagatccatgg
atgccttatgttgctacaacagtttaccctctgagctgagtgctgtggca
catctgtcctaagccactccagatgctgtggttggaaggtccaggacaca
gccccaccccatctcaaaacgaaacaaagaaattgaactctttagaatgt
tttcattatcccagagagaacaacagtcattacctatcttccttcatgct
gcactgaaagtcacacatctactgtctatctgtagattcctgtattctag
atacttgtgtttgttttaattagttagttgctgacaggaaaatctcactt
gggaagtgactctgtagcccaagctggcatcacttagaacacccagctta
gacatttgatatgagagcacatggtgtgtggtcttttatatggctttttt
cacttagcatattttagattggtgcttccatgtttcattccactttatag
ctgatatgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtgtgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90087000_90087988
seq2: B6Ng01-333D10.b_47_1038

seq1  GAATTCCTTAGCTATCAGGCAAACTGAGGCCTAGAGAGCTGTATTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTATCAGGCAAACTGAGGCCTAGAGAGCTGTATTGAGGG  50

seq1  CTAAGATATGGCCAAATTACCTGACTCAACTTCTCTTCCCAGATTTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATATGGCCAAATTACCTGACTCAACTTCTCTTCCCAGATTTTGGC  100

seq1  GAATACAGGCTGAAGGGTAAAAGATTTGAAGTGTATCTTTGTCTATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGGCTGAAGGGTAAAAGATTTGAAGTGTATCTTTGTCTATTGCA  150

seq1  AGTCAGACGAGTTCTGCTGTGTCTCAGCTTGTGTTCATGTGCAAATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACGAGTTCTGCTGTGTCTCAGCTTGTGTTCATGTGCAAATAATG  200

seq1  GGGGTGAGGCTAATTCATCTTTCTTGTTTGTTTGTTTTTTGAGATAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGCTAATTCATCTTTCTTGTTTGTTTGTTTTTTGAGATAAGGT  250

seq1  TTCTCTGTATAACAGCCCTGGCAGTCAATTTATAGACCAGGCTGGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAACAGCCCTGGCAGTCAATTTATAGACCAGGCTGGTCTTG  300

seq1  AACTCTCAGAGATCTTCTTGGTTCCGCCTCCTGATAGGATTAAAGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGAGATCTTCTTGGTTCCGCCTCCTGATAGGATTAAAGTCCTG  350

seq1  GGTCACCATAGCCTGTGATGTTTGTCATTTAAGGAACAATTCTTTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCATAGCCTGTGATGTTTGTCATTTAAGGAACAATTCTTTAATTT  400

seq1  TTTTAGGCCTGGTTGTACAGACCTGTATTCCAGAGGCTGGGTAGGAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCCTGGTTGTACAGACCTGTATTCCAGAGGCTGGGTAGGAGGAT  450

seq1  TACAAGTTTTTAGGCGCATCAAGCTAGTCTGGGTATCTTAGTACAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTTTTAGGCGCATCAAGCTAGTCTGGGTATCTTAGTACAACTCT  500

seq1  TGCTTCAAATAAAATAAAACCACAAAACAACTTTAAAGAGGGCTATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAATAAAATAAAACCACAAAACAACTTTAAAGAGGGCTATGGTA  550

seq1  TAGCTTAGTTTAATCTCCTATACCAGATAATCTATAGGAAATGCTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGTTTAATCTCCTATACCAGATAATCTATAGGAAATGCTAAGTG  600

seq1  TGATAAAATGCATTTGTTTCTTGGGATGGAGAGATGGCTGAGTGATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATGCATTTGTTTCTTGGGATGGAGAGATGGCTGAGTGATTAAG  650

seq1  AAGACCCAGGTTTGGGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGGTTTGGGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCA  700

seq1  CTCGGGAGGCAGAGGCAGGAGGA-TTTCTGAGTTCGAGGCCAGCCTGGTC  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGAGGATTTTCTGAGTTCGAGGCCAGCCTGGTC  750

seq1  TACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  800

seq1  GAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCCAGGTTT-GG  848
      ||||||| |  ||| |||||||||||||||||||||||||||||||| ||
seq2  GAAAAAAAC-CAAATAAAAAAAAAAAAAAAAAAAAAGACCCAGGTTTGGG  849

seq1  TTCTCAGCACCCATACAGTAGCTCACAACCATGACCCAGGGGATCTAGTT  898
      |||||||||||||||||||| |||||| ||||||||  ||| |||||| |
seq2  TTCTCAGCACCCATACAGTACCTCACATCCATGACCAGGGGAATCTAGGT  899

seq1  C-CAGAGGAACATACACATAAACTCTTTTTAAAAAATAATTAA-TTTTTT  946
      | ||||||||||||||| | |||||||||| |||||||||||| ||||||
seq2  CTCAGAGGAACATACAC-TTAACTCTTTTT-AAAAATAATTAATTTTTTT  947

seq1  TTTAGATAAAAAAAATGGTGGTTTCAGGG-TCTAG-AGATGGCTC  989
      ||||||||||||||  |||||||  |||| ||||| |||||||||
seq2  TTTAGATAAAAAAATGGGTGGTTCTAGGGTTCTAGCAGATGGCTC  992

seq1: chr3_90185058_90186104
seq2: B6Ng01-333D10.g_66_1111 (reverse)

seq1  AACACACACACATACACATACACACACACACACACACACATATTCAGCTA  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACACACACACATACACATACACACACACACACACACACATA-TCAGCTA  49

seq1  TAAAGTGGAATGAAACATGGAAGCACCAATCTAAAATATGCTAAGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGAATGAAACATGGAAGCACCAATCTAAAATATGCTAAGTGAAA  99

seq1  AAAGCCATATAAAAGACCACACACCATGTGCTCTCATATCAAATGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATATAAAAGACCACACACCATGTGCTCTCATATCAAATGTCTAA  149

seq1  GCTGGGTGTTCTAAGTGATGCCAGCTTGGGCTACAGAGTCACTTCCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGTTCTAAGTGATGCCAGCTTGGGCTACAGAGTCACTTCCCAAG  199

seq1  TGAGATTTTCCTGTCAGCAACTAACTAATTAAAACAAACACAAGTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTCCTGTCAGCAACTAACTAATTAAAACAAACACAAGTATCTA  249

seq1  GAATACAGGAATCTACAGATAGACAGTAGATGTGTGACTTTCAGTGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGGAATCTACAGATAGACAGTAGATGTGTGACTTTCAGTGCAGC  299

seq1  ATGAAGGAAGATAGGTAATGACTGTTGTTCTCTCTGGGATAATGAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAGATAGGTAATGACTGTTGTTCTCTCTGGGATAATGAAAACA  349

seq1  TTCTAAAGAGTTCAATTTCTTTGTTTCGTTTTGAGATGGGGTGGGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGAGTTCAATTTCTTTGTTTCGTTTTGAGATGGGGTGGGGCTGT  399

seq1  GTCCTGGACCTTCCAACCACAGCATCTGGAGTGGCTTAGGACAGATGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGACCTTCCAACCACAGCATCTGGAGTGGCTTAGGACAGATGTGC  449

seq1  CACAGCACTCAGCTCAGAGGGTAAACTGTTGTAGCAACATAAGGCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACTCAGCTCAGAGGGTAAACTGTTGTAGCAACATAAGGCATCCA  499

seq1  TGGATCTGGGGACAGTGCTCAGTGAACACCTGTGTACATTCCTGAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGGGGACAGTGCTCAGTGAACACCTGTGTACATTCCTGAGGCCT  549

seq1  GAGGTCCCAGCTCACTCCCACAAAGAAATGCTGCATCTGCATCTTTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCAGCTCACTCCCACAAAGAAATGCTGCATCTGCATCTTTAGCC  599

seq1  CCTAAAGACCCCTGGACGAGAAGCCAGGCTCATGGGTCCCGCCATCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGACCCCTGGACGAGAAGCCAGGCTCATGGGTCCCGCCATCCATT  649

seq1  CATCTTTCAGTTTTAGGGCCAGCTGAGGTAGGGGAGGCTGCACAGTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCAGTTTTAGGGCCAGCTGAGGTAGGGGAGGCTGCACAGTCAGG  699

seq1  AGAGTACCCTGTCTTATCATTTATCAAATGTGGGCAAAAGGACTCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACCCTGTCTTATCATTTATCAAATGTGGGCAAAAGGACTCCAAGA  749

seq1  CCAGCCATTCTTGCGGTGCCTGCTGCCCGCGCTTGCGCAGTGATCCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATTCTTGCGGTGCCTGCTGCCCGCGCTTGCGCAGTGATCCTGGC  799

seq1  CTTGAGCGGGCAGGTCAGACTAGGAGGAGGCTCCTGGCAGTCACTCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCGGGCAGGTCAGACTAGGAGGAGGCTCCTGGCAGTCACTCCAGG  849

seq1  GTGACTGAAATCTTCCAGTCGGAGGAGGTCGGGAGGGATGAGGCACCGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAAATCTTCCAGTCGGAGGAGGTCGGGAGGGATGAGGCACCGGA  899

seq1  GCTAGGAAAATGTCAAGGCTACTTCTAAACAGTGAAGCTCTGCAGGCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAATGTCAAGGCTACTTCTAAACAGTGAAGCTCTGCAGGCCCT  949

seq1  GAAGTCTTAGTCCCATGTATCATACAAGCATTCGCAGACAAACTTACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTAGTCCCATGTATCATACAAGCATTCGCAGACAAACTTACACA  999

seq1  GATGATGGTGGCTGTGTCTTTGCTTGAAGACATTGAAAACTGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTGGCTGTGTCTTTGCTTGAAGACATTGAAAACTGAATTC  1046