BAC Information

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BAC

Clone NameB6Ng01-333H01
Chromosome3 (Build37)
Map Location 37,360,001 - 37,513,571
singlet/doubletdoublet
Overlap geneSpata5, LOC665778
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneSpry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333H01.bB6Ng01-333H01.g
ACCGA119243GA119244
length7751,118
definitionB6Ng01-333H01.b B6Ng01-333H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,360,001 - 37,360,710)(37,512,440 - 37,513,571)
sequence
gaattctcctcctaaaaatcaaagttccttttgaaaacacataagtaccc
ccaagatttcccaagattttttttttttaattaagtgaagaaaactgttg
gtatagatccaagaagccaaaagtagggaattttttaaaaaatatatttt
atttcctaggtaaagcatttttgtatctaagtacatattcttacaaaatg
ctattgaaaatattttgtcagggtcctgtcagcaaaatctagctagcata
tgcaatagtgtctgggtttagtggctgtttatgggatggatccccgggtg
gggcagtctctggatggtcctacctactgtctcagctccaaactttgact
ctgtaactcattccatgggtattttgttccccattctaaggaacgaatta
tccacactttggccttccttcttcttgagtttcatgtcctttgcagattg
tatcttgggtattctaagtttcttggctaatatccctgatatagctgtct
cttgtaagactttaccagtgcctggcaaatacagaagtggatgctcacca
tcatctattggatggaacacaaggcccccaatggaggagctagagaaagt
acccaaggagctgaaggggtctgcagccctataggaggaacaacaatatg
aactaactagtattctcagagctcatgttttctagctgcatatgtagcag
aagatggcctagtttggccatcactgggaggagaggcccttggtcttgtg
aagataatattgccccagtacaggg
gaattcttgggtggaactggtcatcagaagagatggccaacaggtcagat
ggacacaggttcagggagggtggcgagctcatagtcatgtctcaggcagc
gtgcaggctgggcatgtcgtaattcctgatcacaggctggattaaaagga
agagcgctggaggttgctgaagtagccgtgcaccgggtggtggaggcctg
acatgccagaggaaatgagaagagggcgggcatctgggagctgagcaggg
aattgaccggacaggtggtttggatctagaagggaattatgggaagctag
aactaccagctggtgaagatagtgttaacgtttttaacttagaatttaaa
tttttagaacaattttctgagtttaaaatggggctcgtttggccagagca
taaggaatatttgcacctggtaagttcgagttccgtggtgagttctgtag
gaacagcgatcctcccaggagatgcagacgacctgagagcagttatcagt
gatcaggacaattgatctggccctgtctgcagaacagatggttgaaaatc
agggtagaatcccgaagcagagtgcaatgaaaaggacagaagtctgaaca
caatgctttaggatttggggaagagtgtcaacggtgtttttctatagctg
tgacacatgcctaaaggatttgtcttggctcacagcccgaggggacagtc
taccacgggagaagtcaggccaccacagcaggaagtcaatcccccccaac
cggaagcagcacaccctagccggaagcagtccatcagggcagggagccag
tccgcctcagcagggcgtcagtcaaaatgcaaagagcgggtgatgctggt
gcccagcccactttcctccttttttgcctcaagtccgggaaccccagaca
gtgccacctacattcagtgtgggtcttcccacctcagtgaaccctctctg
agaacatcctcattcgtataccctaagagtgttgctctggtgatccaatc
cggtagggacatgagattctctgtcacagggctatttctatatgacaaat
ctactgggtggattggctcgtatgatcaggcacgaatagaataagctcgc
catcttactagttagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37360001_37360710
seq2: B6Ng01-333H01.b_48_758

seq1  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGAAAACACATAAGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGAAAACACATAAGTACCC  50

seq1  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100

seq1  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150

seq1  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200

seq1  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250

seq1  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300

seq1  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350

seq1  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400

seq1  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450

seq1  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500

seq1  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550

seq1  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600

seq1  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650

seq1  AACTAACTAGTATTCTCAGAGCTCATG-TTTCTAGCTGCATATGTAGCAG  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACTAACTAGTATTCTCAGAGCTCATGTTTTCTAGCTGCATATGTAGCAG  700

seq1  AAGATGGCCTA  710
      |||||||||||
seq2  AAGATGGCCTA  711

seq1: chr3_37512440_37513571
seq2: B6Ng01-333H01.g_67_1184 (reverse)

seq1  CCACTAACCTAGTAAGATGGCGAAGCTTA-TCTATTCGGTGCCTGAACCA  49
      ||||||| |||||||||||||| |||||| ||||||| |||||||| |  
seq2  CCACTAA-CTAGTAAGATGGCG-AGCTTATTCTATTC-GTGCCTGATC--  45

seq1  ATACCGGAAGCAAAAATCCACCCAGTAAGATTTGGTTCCATATAGAAATA  99
      ||||    |||   |||||||||||| |||||||    ||||||||||||
seq2  ATAC---GAGC--CAATCCACCCAGT-AGATTTG---TCATATAGAAATA  86

seq1  GCCCCTGTGACAGAGAATCTTCATTGTCCCCTACCGGGATTTGGAATCAC  149
      | ||||||||||||||||| ||| ||| ||||||| |||||  | |||||
seq2  G-CCCTGTGACAGAGAATC-TCA-TGT-CCCTACC-GGATT--GGATCAC  129

seq1  CAGAGCAACACTCCTTAGGGTATACGAATGAGGATGTTCTCAGAGAGGGT  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAACACT-CTTAGGGTATACGAATGAGGATGTTCTCAGAGAGGGT  178

seq1  TCACTGAGGTGGGAAGACCCACACTGAATGTAGGTGGCACTGTCTGGGG-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCACTGAGGTGGGAAGACCCACACTGAATGTAGGTGGCACTGTCTGGGGT  228

seq1  TCCCGGAC-TGAG--CAAAAAGGA-GAAAGTGGGCTGGGCACCAGCATCA  294
      |||||||| ||||   |||||||| |||||||||||||||||||||||||
seq2  TCCCGGACTTGAGGCAAAAAAGGAGGAAAGTGGGCTGGGCACCAGCATCA  278

seq1  -CCGCTCTCTGC-TTCTGACTGACGCCCTGCTGAGGCGGACTGGCTCCCT  342
       ||||||| ||| || ||||||||||||||||||||||||||||||||||
seq2  CCCGCTCTTTGCATTTTGACTGACGCCCTGCTGAGGCGGACTGGCTCCCT  328

seq1  GCCCTGATGGACTGCTTCCGGCTAGGGTGTGCTGCTTCCGGTTGGGGGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGATGGACTGCTTCCGGCTAGGGTGTGCTGCTTCCGGTTGGGGGGG  378

seq1  ATTGACTTCCTGCTGTGGTGGCCTGACTTCTCCCGTGGTAGACTGTCCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTCCTGCTGTGGTGGCCTGACTTCTCCCGTGGTAGACTGTCCCC  428

seq1  TCGGGCTGTGAGCCAAGACAAATCCTTTAGGCATGTGTCACAGCTATAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCTGTGAGCCAAGACAAATCCTTTAGGCATGTGTCACAGCTATAGA  478

seq1  AAAACACCGTTGACACTCTTCCCCAAATCCTAAAGCATTGTGTTCAGACT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCGTTGACACTCTTCCCCAAATCCTAAAGCATTGTGTTCAGACT  528

seq1  TCTGTCCTTTTCATTGCACTCTGCTTCGGGATTCTACCCTGATTTTCAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTTCATTGCACTCTGCTTCGGGATTCTACCCTGATTTTCAAC  578

seq1  CATCTGTTCTGCAGACAGGGCCAGATCAATTGTCCTGATCACTGATAACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTCTGCAGACAGGGCCAGATCAATTGTCCTGATCACTGATAACT  628

seq1  GCTCTCAGGTCGTCTGCATCTCCTGGGAGGATCGCTGTTCCTACAGAACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGGTCGTCTGCATCTCCTGGGAGGATCGCTGTTCCTACAGAACT  678

seq1  CACCACGGAACTCGAACTTACCAGGTGCAAATATTCCTTATGCTCTGGCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGAACTCGAACTTACCAGGTGCAAATATTCCTTATGCTCTGGCC  728

seq1  AAACGAGCCCCATTTTAAACTCAGAAAATTGTTCTAAAAATTTAAATTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGCCCCATTTTAAACTCAGAAAATTGTTCTAAAAATTTAAATTCT  778

seq1  AAGTTAAAAACGTTAACACTATCTTCACCAGCTGGTAGTTCTAGCTTCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAACGTTAACACTATCTTCACCAGCTGGTAGTTCTAGCTTCCC  828

seq1  ATAATTCCCTTCTAGATCCAAACCACCTGTCCGGTCAATTCCCTGCTCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCCTTCTAGATCCAAACCACCTGTCCGGTCAATTCCCTGCTCAG  878

seq1  CTCCCAGATGCCCGCCCTCTTCTCATTTCCTCTGGCATGTCAGGCCTCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGATGCCCGCCCTCTTCTCATTTCCTCTGGCATGTCAGGCCTCCA  928

seq1  CCACCCGGTGCACGGCTACTTCAGCAACCTCCAGCGCTCTTCCTTTTAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGGTGCACGGCTACTTCAGCAACCTCCAGCGCTCTTCCTTTTAAT  978

seq1  CCAGCCTGTGATCAGGAATTACGACATGCCCAGCCTGCACGCTGCCTGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTGATCAGGAATTACGACATGCCCAGCCTGCACGCTGCCTGAG  1028

seq1  ACATGACTATGAGCTCGCCACCCTCCCTGAACCTGTGTCCATCTGACCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTATGAGCTCGCCACCCTCCCTGAACCTGTGTCCATCTGACCTG  1078

seq1  TTGGCCATCTCTTCTGATGACCAGTTCCACCCAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATCTCTTCTGATGACCAGTTCCACCCAAGAATTC  1118