BAC Information

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BAC

Clone NameB6Ng01-333N13
Chromosome3 (Build37)
Map Location 5,414,353 - 5,532,431
singlet/doubletdoublet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N13.bB6Ng01-333N13.g
ACCGA119505GA119506
length1,1761,097
definitionB6Ng01-333N13.b B6Ng01-333N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,531,236 - 5,532,431)(5,414,353 - 5,415,476)
sequence
gaattcatatgcactatcatgctaaaggcctattaggatttcatctagga
tgtttcacattcaagaaagattttaagccaaagatattttctgcttataa
taaaaacaatcaaattagaaactattaggcaggtgtacaaatataaatca
tgagatttatgatgctgttactttattctagcaatttctaaaatggtatt
ctttttacacaaaggagtcacatcctgcctctttcatggcttttggttat
ggaatttctgtcagtaacatttatcaatacttataaaatcatagatttaa
ttttctcaatgttcccttttatttttattttatttatataggtatttcac
ttccatgtttgtttgtgtatcatttgcatccatggtgcctgaagaggtaa
gaagaatgtatcacatgccttggaactggagttcagacagttgtgaactg
ccttgtgtgtgctgggaatcaaacacacaagtccattggaagacgaagta
gtgctcttaactgttaagctatcgtttctgttccttggaagatagttttg
aagagttaacatgtagattttagcaagtaagtactcagaatccattttat
aggttgcaataacaaattcactgtttcactatagaaaaatagtacaccct
ccaataattgtacttagctaaaatatctacttgtttaaaatagttcccta
ctggtcagaattctgccctgtaaagtcactagagaactcagacctctttc
tgcaagcgactttctttgcacacatgatacatgcatacaaatcatgactg
tcttcctttacttgtgtctagtcaacttgctgttgtcttccattcttctt
tcaccaatgcctactgccacatgctggaagggaaactgagtcatgaggtt
gagtggaaaaattctctgtgctaactgttaagctctcaaatgggactcta
tctagccagttagtttgggcttttttatacttccaagtgtccactccttt
ttttttctagtaacagcttttaccatttcctttacctcaaaggtcgtcta
ctgagactatggcatcttgtagtttgagagctgtgaagttgattgtatca
catgttactctctcagatagacacagatcatggctctgggactaattgca
taaactgacaagcagagagtatattt

gaattcagtgatatccctatacactgccaattagtggataggttattgta
cttccattcatactctgggcacttgtgttaaattgttctgttacacactt
ttgtctaacctgttttgttttttatcatatatgcattaaaagtattatgt
ttatcaacatttgctgctattgtgttaacatttttgttttgcttgccatg
aggccccatttccacctcccagtaaactgacttataaattgctatacttt
tcctgttttttctgttgctgtggaacttaaagaatgtgaaagctgtcaaa
gggtgttttcggaatcacttttgtgtttcgtatagtaaaacaatgtgatt
cattccaaagtaacagaaggctatttgtaagaaagataaaggcttgtgaa
caaagaaagctaagctgttgtacatattgtagttggctgtgcatggtaca
aatttattaatatgaagaaatgcaaaatgtattgcttttgatatttctat
tctgagatgaaccagtagcatgtaatgcaactgtttgacagtttaactca
attcatgcttcaaactgttttaatcatcaaaccaagtcactgttcatttt
catcttcttgtacagtttttgtttgggtaatgatcacagcaatccttaca
cattttatgtaaactctttaatgtctttaatttggatttttgtttcttag
aactttaacatttattttaatcctgaagacacttttttgattgtgtttcg
taagagacaacatggcctcctaaggtgcaatcctgccgctatagtgagct
aatgtcctgaatccaaaggcttcagaaattgcttttgcctttttcatgaa
tgttaagcagcagcattgtgagatcgatctgtcctggcagttaacacaat
gtgcaacagtgtgttagcatggacagaacgcctctcacaaacaaggaccg
tttacaaaggatgatccgacagtgtgtcgacataactttacaactgcaca
gcagcaaaagaaaaaaagaaaaaaactttacctggacgacgacgttgtag
ggtaaaataagacgctcacgaagtgaagacagactgttttcttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5531236_5532431
seq2: B6Ng01-333N13.b_47_1222 (reverse)

seq1  AAATATAATCTCTTGCTTGTCAGTTTTATGCAAAATTAGTCCCAGAGCCA  50
      ||||||| |||| |||||||||| |||||||  |||||||||||||||||
seq2  AAATATACTCTC-TGCTTGTCAG-TTTATGC--AATTAGTCCCAGAGCCA  46

seq1  TGAATTCTAAATTGTCTA-CT--GAGAGTAACATGGTGATAACAATACAA  97
      |||  |||    |||||| ||  ||||||||||| ||||| ||||| |||
seq2  TGA--TCT---GTGTCTATCTGAGAGAGTAACAT-GTGAT-ACAAT-CAA  88

seq1  ACCTTCACAGCTCTTCAAACCTACAAGATGCCATAGTCTCAGTAAGAACG  147
        ||||||||||| ||||| ||||||||||||||||||||||||   |||
seq2  --CTTCACAGCTC-TCAAA-CTACAAGATGCCATAGTCTCAGTA--GACG  132

seq1  ACCCTTTTGAGGTAAAGGAAATGGTAAAAGCTGTTACTAGAAAAAAAAAG  197
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACC--TTTGAGGTAAAGGAAATGGTAAAAGCTGTTACTAGAAAAAAAAAG  180

seq1  GAGTTGGAACAACTTGGAAGTATAAAAAAGCCCAAACTAACTGGCTAGAT  247
      ||| ||||   |||||||||||||||||||||||||||||||||||||||
seq2  GAG-TGGA--CACTTGGAAGTATAAAAAAGCCCAAACTAACTGGCTAGAT  227

seq1  AGAGTCCCATTTGAGAGCTTAACAGTTAGCACAGAGAATTTTTCCACTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCATTTGAGAGCTTAACAGTTAGCACAGAGAATTTTTCCACTCA  277

seq1  ACCTCATGACTCAGTTTCCCTTCCAGCATGTGGCAGTAGGCATTGGTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGACTCAGTTTCCCTTCCAGCATGTGGCAGTAGGCATTGGTGAA  327

seq1  AGAAGAATGGAAGACAACAGCAAGTTGACTAGACACAAGTAAAGGAAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGGAAGACAACAGCAAGTTGACTAGACACAAGTAAAGGAAGAC  377

seq1  AGTCATGATTTGTATGCATGTATCATGTGTGCAAAGAAAGTCGCTTGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATTTGTATGCATGTATCATGTGTGCAAAGAAAGTCGCTTGCAG  427

seq1  AAAGAGGTCTGAGTTCTCTAGTGACTTTACAGGGCAGAATTCTGACCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTCTGAGTTCTCTAGTGACTTTACAGGGCAGAATTCTGACCAGT  477

seq1  AGGGAACTATTTTAAACAAGTAGATATTTTAGCTAAGTACAATTATTGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTATTTTAAACAAGTAGATATTTTAGCTAAGTACAATTATTGGA  527

seq1  GGGTGTACTATTTTTCTATAGTGAAACAGTGAATTTGTTATTGCAACCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTACTATTTTTCTATAGTGAAACAGTGAATTTGTTATTGCAACCTA  577

seq1  TAAAATGGATTCTGAGTACTTACTTGCTAAAATCTACATGTTAACTCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATTCTGAGTACTTACTTGCTAAAATCTACATGTTAACTCTTC  627

seq1  AAAACTATCTTCCAAGGAACAGAAACGATAGCTTAACAGTTAAGAGCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCTTCCAAGGAACAGAAACGATAGCTTAACAGTTAAGAGCACT  677

seq1  ACTTCGTCTTCCAATGGACTTGTGTGTTTGATTCCCAGCACACACAAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGTCTTCCAATGGACTTGTGTGTTTGATTCCCAGCACACACAAGGC  727

seq1  AGTTCACAACTGTCTGAACTCCAGTTCCAAGGCATGTGATACATTCTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAACTGTCTGAACTCCAGTTCCAAGGCATGTGATACATTCTTCT  777

seq1  TACCTCTTCAGGCACCATGGATGCAAATGATACACAAACAAACATGGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTCAGGCACCATGGATGCAAATGATACACAAACAAACATGGAAG  827

seq1  TGAAATACCTATATAAATAAAATAAAAATAAAAGGGAACATTGAGAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACCTATATAAATAAAATAAAAATAAAAGGGAACATTGAGAAAAT  877

seq1  TAAATCTATGATTTTATAAGTATTGATAAATGTTACTGACAGAAATTCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTATGATTTTATAAGTATTGATAAATGTTACTGACAGAAATTCCA  927

seq1  TAACCAAAAGCCATGAAAGAGGCAGGATGTGACTCCTTTGTGTAAAAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAAGCCATGAAAGAGGCAGGATGTGACTCCTTTGTGTAAAAAGA  977

seq1  ATACCATTTTAGAAATTGCTAGAATAAAGTAACAGCATCATAAATCTCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTTTAGAAATTGCTAGAATAAAGTAACAGCATCATAAATCTCAT  1027

seq1  GATTTATATTTGTACACCTGCCTAATAGTTTCTAATTTGATTGTTTTTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATATTTGTACACCTGCCTAATAGTTTCTAATTTGATTGTTTTTAT  1077

seq1  TATAAGCAGAAAATATCTTTGGCTTAAAATCTTTCTTGAATGTGAAACAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGAAAATATCTTTGGCTTAAAATCTTTCTTGAATGTGAAACAT  1127

seq1  CCTAGATGAAATCCTAATAGGCCTTTAGCATGATAGTGCATATGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAAATCCTAATAGGCCTTTAGCATGATAGTGCATATGAATTC  1176


seq1: chr3_5414353_5415476
seq2: B6Ng01-333N13.g_66_1162

seq1  GAATTCAGTGATATCCCTATACACTGCCAATTAGTGGATAGGTTATTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATATCCCTATACACTGCCAATTAGTGGATAGGTTATTGTA  50

seq1  CTTCCATTCATACTCTGGGCACTTGTGTTAAATTGTTCTGTTACACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTCATACTCTGGGCACTTGTGTTAAATTGTTCTGTTACACACTT  100

seq1  TTGTCTAACCTGTTTTGTTTTTTATCATATATGCATTAAAAGTATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAACCTGTTTTGTTTTTTATCATATATGCATTAAAAGTATTATGT  150

seq1  TTATCAACATTTGCTGCTATTGTGTTAACATTTTTGTTTTGCTTGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAACATTTGCTGCTATTGTGTTAACATTTTTGTTTTGCTTGCCATG  200

seq1  AGGCCCCATTTCCACCTCCCAGTAAACTGACTTATAAATTGCTATACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCATTTCCACCTCCCAGTAAACTGACTTATAAATTGCTATACTTT  250

seq1  TCCTGTTTTTTCTGTTGCTGTGGAACTTAAAGAATGTGAAAGCTGTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTTTCTGTTGCTGTGGAACTTAAAGAATGTGAAAGCTGTCAAA  300

seq1  GGGTGTTTTCGGAATCACTTTTGTGTTTCGTATAGTAAAACAATGTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTTCGGAATCACTTTTGTGTTTCGTATAGTAAAACAATGTGATT  350

seq1  CATTCCAAAGTAACAGAAGGCTATTTGTAAGAAAGATAAAGGCTTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAAGTAACAGAAGGCTATTTGTAAGAAAGATAAAGGCTTGTGAA  400

seq1  CAAAGAAAGCTAAGCTGTTGTACATATTGTAGTTGGCTGTGCATGGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGCTAAGCTGTTGTACATATTGTAGTTGGCTGTGCATGGTACA  450

seq1  AATTTATTAATATGAAGAAATGCAAAATGTATTGCTTTTGATATTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAATATGAAGAAATGCAAAATGTATTGCTTTTGATATTTCTAT  500

seq1  TCTGAGATGAACCAGTAGCATGTAATGCAACTGTTTGACAGTTTAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGAACCAGTAGCATGTAATGCAACTGTTTGACAGTTTAACTCA  550

seq1  ATTCATGCTTCAAACTGTTTTAATCATCAAACCAAGTCACTGTTCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCTTCAAACTGTTTTAATCATCAAACCAAGTCACTGTTCATTTT  600

seq1  CATCTTCTTGTACAGTTTTTGTTTGGGTAATGATCACAGCAATCCTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTGTACAGTTTTTGTTTGGGTAATGATCACAGCAATCCTTACA  650

seq1  CATTTTATGTAAACTCTTTAATGTCTTTAATTTGGATTTTTGTTTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGTAAACTCTTTAATGTCTTTAATTTGGATTTTTGTTTCTTAG  700

seq1  AACTTTAACATTTATTTTAATCCTGAAGACACTTTTTTGATTGTGTTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACATTTATTTTAATCCTGAAGACACTTTTTTGATTGTGTTTCG  750

seq1  TAAGAGACAACATGGCCTCCTAAGGTGCAATCCTGCCGCTATAGTGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACAACATGGCCTCCTAAGGTGCAATCCTGCCGCTATAGTGAGCT  800

seq1  AATGTCCTGAATCCAAAGGCTTCAGAAAATTGCTTTTGCCTTTTTCATGA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATGTCCTGAATCCAAAGGCTTCAG-AAATTGCTTTTGCCTTTTTCATGA  849

seq1  ATGTTAAGCAGCAGCATTGTGAGATCGATCTGTCCTGGCAGTTAACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAGCAGCAGCATTGTGAGATCGATCTGTCCTGGCAGTTAACACAA  899

seq1  TGTGCAACAGTGTGTTAGCATGGAACAGAACGCCTCTCACAAAACAAAGG  950
      ||||||||||||||||||||||| |||||||||||||||||||   ||||
seq2  TGTGCAACAGTGTGTTAGCATGG-ACAGAACGCCTCTCACAAA--CAAGG  946

seq1  ACCGTTTTACAAAGGATGATCCGACAGTGTGTCGACATAAACTTTTACAA  1000
      |||| |||||||||||||||||||||||||||||||||||   |||||||
seq2  ACCG-TTTACAAAGGATGATCCGACAGTGTGTCGACATAA--CTTTACAA  993

seq1  CTGCACAGCAGCCAAAAAAGAAAAAAAAGAAAAAAAAAAACTTTAACTGG  1050
      ||||||||||||   |||||||||     ||| |||||||||||| ||||
seq2  CTGCACAGCAGC---AAAAGAAAA-----AAAGAAAAAAACTTTACCTGG  1035

seq1  ACG--GACGTTGTTAGGGTGAGAAATAAAAGGACAGCCTCCAAAGGTTGA  1098
      |||  ||||||| ||||||   ||||||   ||| ||   | |||  |||
seq2  ACGACGACGTTG-TAGGGT--AAAATAA---GAC-GCTCACGAAG--TGA  1076

seq1  GAGCAAGAATTGTTTTTTTCTTGGAT  1124
       ||  |||     | |||||||||||
seq2  -AGACAGA----CTGTTTTCTTGGAT  1097


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