BAC Information

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BAC

Clone NameB6Ng01-334G05
Chromosome3 (Build37)
Map Location 105,361,471 - 105,561,938
singlet/doubletdoublet
Overlap geneKcnd3, Ddx20, 6530418L21Rik, Rap1a
Upstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneEG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334G05.bB6Ng01-334G05.g
ACCGA119903GA119904
length8381,231
definitionB6Ng01-334G05.b B6Ng01-334G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,361,471 - 105,362,305)(105,560,701 - 105,561,938)
sequence
gaattctctgacttttacaagtttctgtgtcttcataagaagaagaagaa
ggggagaaaggaggagaagaagatgaagaataataataataacagtaata
acaagaagaagaggaggaggaggagaagaagaaagagaaagaaagaagga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaaggaagaggaagaagaaggaagaaa
gaggaagaaagaggaagaaggaaggaagaagaagaaaaagaagaaagaag
aaaaaggaagaaggaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaaagaagaaagaggaaagaggaaagaggaaagaggaaagag
gaaagaggaaagaggaaagaagaaagaagaaagaagaaagaagaaaggag
gaggaagagaaagtcttctttggaagctaaattcagtggctgcatgttga
tgttgtgttcagggctttgaggacaatttctgttgtccttcagatgtaac
agtagtagagtgcttgtccagcacattctgagagcctgaatttccatccc
taacattgctaacatacataacacacacacacacacacatacacacacac
acacacacacacacacacacacacacacatacacacacacacacacacac
acacgtgtcaatatggagctccgaggttgaaagggccagttctcaggggc
tctgtgtgataggcaaggaagaatactactgttgggcttcgagaagcttg
accagcttttgatgcctctaatatgtctgctgtcaagg
gaattccaggaaaccctgtctcgaaaaaaccaaaaacaaaaagaaaaaaa
aaaaagtcttattgatggtacccatctccatgtccatcactcagcagtgc
taaacaggatacaggcagtcactaggatacaggatacagcattcactagg
ctttgatagctcatggacgcagagcacatgttgtccccaaacgcagagca
caggatatttttggatttggtactgttctcccttctgttaattagaggca
ttcccagtactagacatttagaataaaaagttacagtcatagatactttg
acaaagatcatcccttcaggatgaatgttaaatcatttaaatatgagaaa
taagttttacttcagagtagatatttgatttaatgtaaaaagtacatttg
agattttcattttaaatgtattgttgtttctagaaaacagctcagtttaa
tgatttaattatgcaatgtgtaaccttgatcacctattgcaatgtgaact
actgcattagtaggcgatactttttaacatatgaaaacaagacataaaag
aaataatatagtttctttctgttctgcagttgtgccctcagcccttcttg
tttagttcttttttgtttttcaagtttttattaaatccatctcagcttgt
ctgcaggtttagtgaggcacactggtaaaccctgtctgtcatccaggagg
ctgaagtaggagctgcctttgaagccagccaggatatgttgcaagtcatt
ccagacaagcaaacaaaccagcagtgtcagaaccagtctcaccaactcac
ttgcttcatagcatgaaaattcatagttggaaaaacatgcttgtttaaag
ttgtctttcaggatgaaaaagatccagaacaaatttctccctaaattaga
atttatattacttggtttaaaaactgtccttttaggactggtggatatga
catgctacacattcagccacacagcacatcttttcagctcctctaattca
aatctggaattagttattaaaaacaatgctgtagattggtttgtttacga
tgagaataaagtctgcttttcttctcttggagacagggtttcactggtgg
gaaccagttggaggctgaaggcagtctcagattagcctttcaccttgtcc
cttgcctgaggcgagacttctcattgctggacagctgcataaccagtcgg
gtgctcaagactctccaggaattctcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105361471_105362305
seq2: B6Ng01-334G05.b_49_886

seq1  GAATTCTCTGACTTTTACAAGTTTCTGTGTCTTCATAAGAAGAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACTTTTACAAGTTTCTGTGTCTTCATAAGAAGAAGAAGAA  50

seq1  GGGGAGAAAGGAGGAGAAGAAGATGAAGAATAATAATAATAACAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAAGGAGGAGAAGAAGATGAAGAATAATAATAATAACAGTAATA  100

seq1  ACAAGAAGAAGAGGAGGAGGAGGAGAAGAAGAAAGAGAAAGAAAGAAG--  148
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ACAAGAAGAAGAGGAGGAGGAGGAGAAGAAGAAAGAGAAAGAAAGAAGGA  150

seq1  ----GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  194
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  200

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAGGAAGAAGAAGGAAGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAGGAAGAAGAAGGAAGAAA  250

seq1  GAGGAAGAAAGAGGAAGAAGGAAGGAAGAAGAAGAAAAAGAAGAAAGAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAAGAGGAAGAAGGAAGGAAGAAGAAGAAAAAGAAGAAAGAAG  300

seq1  AAAAAGGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  350

seq1  AAGAAGAAGAAAGAAGAAAGAGGAAAGAGGAAAGAGGAAAGAGGAAAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAAGAAGAAAGAGGAAAGAGGAAAGAGGAAAGAGGAAAGAG  400

seq1  GAAAGAGGAAAGAGGAAAGAAGAAAGAAGAAAGAAGAAAGAAGAAAGGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAAAGAGGAAAGAAGAAAGAAGAAAGAAGAAAGAAGAAAGGAG  450

seq1  GAGGAAGAGAAAGTCTTCTTTGGAAGCTAAATTCAGTGGCTGCATGTTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGAAAGTCTTCTTTGGAAGCTAAATTCAGTGGCTGCATGTTGA  500

seq1  TGTTGTGTTCAGGGCTTTGAGGACAATTTCTGTTGTCCTTCAGATGTAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTCAGGGCTTTGAGGACAATTTCTGTTGTCCTTCAGATGTAAC  550

seq1  AGTAGTAGAGTGCTTGTCCAGCACATTCTGAGAGCCTGAA-TTCCATCCC  593
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTAGTAGAGTGCTTGTCCAGCACATTCTGAGAGCCTGAATTTCCATCCC  600

seq1  TAACATTGCTAACATACATAACACACACACACACACACATACACACACAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGCTAACATACATAACACACACACACACACACATACACACACAC  650

seq1  ACACACACACACACACACACACACACACATACACACACACACACACACAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATACACACACACACACACACAC  700

seq1  ACACGTGTCAATATGGAGCTCCGAGGTTGAAAAGGGCCAGTTCTCAAGGG  743
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  ACACGTGTCAATATGGAGCTCCGAGGTTG-AAAGGGCCAGTTCTCAGGGG  749

seq1  CTTTGTGTGATAGGCCAAGGAAGAAGACAACTGTTTGGGCTTCGAGAAGC  793
      || ||||||||||| |||||||||| || |||| ||||||||||||||||
seq2  CTCTGTGTGATAGG-CAAGGAAGAATACTACTG-TTGGGCTTCGAGAAGC  797

seq1  TTTGACCAGCTTTTGATGCCTCTAAGAGGTCTGCTGTCAAGG  835
       |||||||||||||||||||||||| | ||||||||||||||
seq2  -TTGACCAGCTTTTGATGCCTCTAATATGTCTGCTGTCAAGG  838

seq1: chr3_105560701_105561938
seq2: B6Ng01-334G05.g_65_1295 (reverse)

seq1  AAGAGGAGAA-TCCTGAAGACT-GTGAGCCACCCGACCTGGTGTATGCAG  48
      |||||||||| ||||| ||| |  |||| ||||||| ||||| |||||||
seq2  AAGAGGAGAATTCCTGGAGAGTCTTGAG-CACCCGA-CTGGT-TATGCAG  47

seq1  CCTGCTCAGGGACAATGAGA--TCTCGCTTCAAGCAAGGGACAAGGTGAA  96
       |||  |||   ||||||||  |||||| ||| |||||||||||||||||
seq2  -CTGTCCAG---CAATGAGAAGTCTCGCCTCAGGCAAGGGACAAGGTGAA  93

seq1  A-GCTAATACCTGAGACTGCCCTCTGGCCTCC-ACTGTGTCCCA-CAGTG  143
      | ||||||  ||||||||||| ||  |||||| ||||  ||||| |||||
seq2  AGGCTAAT--CTGAGACTGCCTTC-AGCCTCCAACTGGTTCCCACCAGTG  140

seq1  AAACCCTGTCTC--AGAG-AGAAAAGCAGAACTTTTAATCTCATTCGTAA  190
      ||||||||||||  |||| |||||||||||   |||| ||||| ||||||
seq2  AAACCCTGTCTCCAAGAGAAGAAAAGCAGA--CTTTATTCTCA-TCGTAA  187

seq1  ACAAACCAATCTTACAGCATTGTTTTTAATAACTAATTCCAGATTTGAAT  240
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAATC-TACAGCATTGTTTTTAATAACTAATTCCAGATTTGAAT  236

seq1  TAGAGGAGCTGGAAAAGATGTGCTGTGTGGCTGAATGTTGTAGCATGTCA  290
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TAGAGGAGCT-GAAAAGATGTGCTGTGTGGCTGAATG-TGTAGCATGTCA  284

seq1  TATCCA-CAGTCCTAAAAGGACAGTTTTTTAAACCAAGTAATATAAATTC  339
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TATCCACCAGTCCTAAAAGGACAG-TTTTTAAACCAAGTAATATAAATTC  333

seq1  TAATTTAGGGAGAAATTTGTTCTGGATCTTTTTCATCCCTGAAAGACAAC  389
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATTTAGGGAGAAATTTGTTCTGGATCTTTTTCAT-CCTGAAAGACAAC  382

seq1  TTTAAACAAGCATGTTTTTCCAACTATGAATTTTCATGCTATGAAGCAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAGCATGTTTTTCCAACTATGAATTTTCATGCTATGAAGCAAG  432

seq1  TGAGTTGGTGAGACTGGTTCTGACACTGCTGGTTTGTTTGCTTGTCTGGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGTGAGACTGGTTCTGACACTGCTGGTTTGTTTGCTTGTCTGGA  482

seq1  ATGACTTGCAACATATCCTGGCTGGCTTCAAAGGCAGCTCCTACTTCAGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGCAACATATCCTGGCTGGCTTCAAAGGCAGCTCCTACTTCAGC  532

seq1  CTCCTGGATGACAGACAGGGTTTACCAGTGTGCCTCACTAAACCTGCAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGATGACAGACAGGGTTTACCAGTGTGCCTCACTAAACCTGCAGA  582

seq1  CAAGCTGAGATGGATTTAATAAAAACTTGAAAAACAAAAAAGAACTAAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAGATGGATTTAATAAAAACTTGAAAAACAAAAAAGAACTAAAC  632

seq1  AAGAAGGGCTGAGGGCACAACTGCAGAACAGAAAGAAACTATATTATTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGCTGAGGGCACAACTGCAGAACAGAAAGAAACTATATTATTTC  682

seq1  TTTTATGTCTTGTTTTCATATGTTAAAAAGTATCGCCTACTAATGCAGTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCTTGTTTTCATATGTTAAAAAGTATCGCCTACTAATGCAGTA  732

seq1  GTTCACATTGCAATAGGTGATCAAGGTTACACATTGCATAATTAAATCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATTGCAATAGGTGATCAAGGTTACACATTGCATAATTAAATCAT  782

seq1  TAAACTGAGCTGTTTTCTAGAAACAACAATACATTTAAAATGAAAATCTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAGCTGTTTTCTAGAAACAACAATACATTTAAAATGAAAATCTC  832

seq1  AAATGTACTTTTTACATTAAATCAAATATCTACTCTGAAGTAAAACTTAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTTTTTACATTAAATCAAATATCTACTCTGAAGTAAAACTTAT  882

seq1  TTCTCATATTTAAATGATTTAACATTCATCCTGAAGGGATGATCTTTGTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATATTTAAATGATTTAACATTCATCCTGAAGGGATGATCTTTGTC  932

seq1  AAAGTATCTATGACTGTAACTTTTTATTCTAAATGTCTAGTACTGGGAAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCTATGACTGTAACTTTTTATTCTAAATGTCTAGTACTGGGAAT  982

seq1  GCCTCTAATTAACAGAAGGGAGAACAGTACCAAATCCAAAAATATCCTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAATTAACAGAAGGGAGAACAGTACCAAATCCAAAAATATCCTGT  1032

seq1  GCTCTGCGTTTGGGGACAACATGTGCTCTGCGTCCATGAGCTATCAAAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGTTTGGGGACAACATGTGCTCTGCGTCCATGAGCTATCAAAGC  1082

seq1  CTAGTGAATGCTGTATCCTGTATCCTAGTGACTGCCTGTATCCTGTTTAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAATGCTGTATCCTGTATCCTAGTGACTGCCTGTATCCTGTTTAG  1132

seq1  CACTGCTGAGTGATGGACATGGAGATGGGTACCATCAATAAGACTTTTTT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGAGTGATGGACATGGAGATGGGTACCATCAATAAGACTTTTTT  1182

seq1  TTTTTTCTTTTTGTTTTTGGTTTTTTCGAGACAGGGTTTCCTGGAATTC  1238
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTGTTTTTGGTTTTTTCGAGACAGGGTTTCCTGGAATTC  1231