BAC Information

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BAC

Clone NameB6Ng01-335F18
Chromosome3 (Build37)X (Build37)
Map Location 130,343,436 - 130,344,545102,941,542 - 102,942,531
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1
Downstream gene2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F18.bB6Ng01-335F18.g
ACCGA120614GA120615
length1,101957
definitionB6Ng01-335F18.b B6Ng01-335F18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,343,436 - 130,344,545)(102,941,542 - 102,942,531)
sequence
gaattccacataaaaccagagacactgaaacttatagaggagaaagtggg
gaaaagcctcgaagatatgggcacaggggaaaaattcctgaatagaacag
caatggcttgtgctgtaagatcgagaattgacaaatgggacttcatgaaa
ctgcaaagcttctgtaaggcaaaagacaccgtcaataagacaaaaaggcc
accaacagattgggaaaggatctttacctatcctaaatcagataggggac
taatatccaatatatataaagaactcaagaaggtggactccagaaaatca
aataaccccattaaaaaatggggctcagagctaaacaaagaattctcacc
tgaattccgaatggctgagaagcacctaatatttcttgaaattcccaata
ttgctttacactccttgagccttattcaacttctttttaaaaagaatttc
tgatgagcagtggaggtgcatgcctttaacaccagcactaaggaggttga
ggcaggtggatgtcttgtgagttcaaggccagcgtactgtacagcatata
tcccatgacagccagggctacccaggaaaatgctgtcctgaaaaacaaac
aaagaaatcccaaacctaatgctattattctgctaaaggaatataacaat
aagatgactcctaatgacatactgctatacccatccacacataggtcaat
gcctgactcaacccccctcacagaagcttcttgtagtcgatgggaattaa
cacagaggcgcacaactgcacaatatacagagtgtgagactttgcagccc
tcggtccaaaatggatgtcttcatcaaatcattttcccgaaagctcaggg
acctgtgaagaagaggcagcagaaagactgtgaaagcaacaggcggtgga
tgactctaaggaaacaatgtcttccaacaggactgatgcacacataagct
cataaagactaagacagcttgcatcagacctgcacagtttcacaccacac
agggtccactaaccagacagggaaatggatacaggacacatcctaccagg
agcaatctataatgatagtcaccggcaagtgacattgcttctctgtggca
t
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctctggtgaatttgcttcctttttttctagagct
tttagatgtgtgtcagctgctatatgtgctctctcccgtttttcttgaag
catccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130343436_130344545
seq2: B6Ng01-335F18.b_46_1146

seq1  GAATTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGG  50

seq1  GAAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAG  100

seq1  CAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACTTCATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACTTCATGAAA  150

seq1  CTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCC  200

seq1  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  250

seq1  TAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCA  300

seq1  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACC  350

seq1  TGAATTCCGAATGGCTGAGAAGCACCTAATATTTCTTGAAATTCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCGAATGGCTGAGAAGCACCTAATATTTCTTGAAATTCCCAATA  400

seq1  TTGCTTTACACTCCTTGAGCCTTATTCAACTTCTTTTTAAAAAGAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTACACTCCTTGAGCCTTATTCAACTTCTTTTTAAAAAGAATTTC  450

seq1  TGATGAGCAGTGGAGGTGCATGCCTTTAACACCAGCACTAAGGAGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCAGTGGAGGTGCATGCCTTTAACACCAGCACTAAGGAGGTTGA  500

seq1  GGCAGGTGGATGTCTTGTGAGTTCAAGGCCAGCCTGCTGTACAGCATATA  550
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  GGCAGGTGGATGTCTTGTGAGTTCAAGGCCAGCGTACTGTACAGCATATA  550

seq1  TCCCATGACAGCCAGGGCTACCCAGGAAAATGCTGTCCTGAAAAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGACAGCCAGGGCTACCCAGGAAAATGCTGTCCTGAAAAACAAAC  600

seq1  AAAGAAATCCCAAACCTAATGCTATTATTCTGCTAAAGGAATATAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCCCAAACCTAATGCTATTATTCTGCTAAAGGAATATAACAAT  650

seq1  AAGATGACTCCTAATGACATACTGCTATACCCATCCACACATAGGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTCCTAATGACATACTGCTATACCCATCCACACATAGGTCAAT  700

seq1  GCCTGACTCAACCCCCCTCACAGAAGCTTCTTGTAGTCGATGGGAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTCAACCCCCCTCACAGAAGCTTCTTGTAGTCGATGGGAATTAA  750

seq1  CACAGAGGCGCACAACTGCACAATATACAGAGTGTGAGACTTTGCAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCGCACAACTGCACAATATACAGAGTGTGAGACTTTGCAGCCC  800

seq1  TCGGTCCAAAATGGATGTCTTCATCAAATCATTTTCCCGAAGGCTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCGGTCCAAAATGGATGTCTTCATCAAATCATTTTCCCGAAAGCTCAGGG  850

seq1  ACCTGTGAAGAAGAGGCAGCAGAAAGACTGTGAAAGCAACAGGCGGTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAAGAAGAGGCAGCAGAAAGACTGTGAAAGCAACAGGCGGTGGA  900

seq1  TGACTCTAAGGAAACAATGTCTTCCAACAGGACTGATGCACACATAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAAGGAAACAATGTCTTCCAACAGGACTGATGCACACATAAGCT  950

seq1  CATAAAGACTAAGACAGCTTGCATCAGACCTGCACAGTTTCACACCACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGACTAAGACAGCTTGCATCAGACCTGCACAGTTTCACACCACAC  1000

seq1  AGGGTCCACTAACCAGACAGGGAAATGGATACAGGACCACATCCCTAACC  1050
      |||||||||||||||||||||||||||||||||||| |||||||   |||
seq2  AGGGTCCACTAACCAGACAGGGAAATGGATACAGGA-CACATCC--TACC  1047

seq1  AGGAAGCAATCTATAATTGATAGTCACGGGCAAAGTGAACATTGGTTTCT  1100
      ||| |||||||||||| |||||||||| ||| ||||| ||||| | ||||
seq2  AGG-AGCAATCTATAA-TGATAGTCACCGGC-AAGTG-ACATT-GCTTCT  1092

seq1  CCTGTGGCAT  1110
       |||||||||
seq2  -CTGTGGCAT  1101

seq1: chrX_102941542_102942531
seq2: B6Ng01-335F18.g_494_1023 (reverse)

seq1  GTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTAGAGAAAGTATCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAAAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCTAGCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGGGGGGAGCGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATGAAGCCACAACGT  400
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATA  450
                                                        
seq2  --------------------------------------------------  0

seq1  GCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTT  500
          ||  || ||||||| ||||||||||||||||||||| ||||||| |
seq2  ---GTGGATG-CTTCAAG-AAAAACGGGAGAGAGCACATA-TAGCAGC-T  43

seq1  GACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGA  550
      ||| |||||||||||||||||||||||||||||||||||||||||  |||
seq2  GAC-ACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACC--AGA  90

seq1  GGAGTAGACGGCGGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTG  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTG  140

seq1  GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTT  190

seq1  TGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC  240

seq1  ACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATA  290

seq1  ACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAG  340

seq1  GCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGG  390

seq1  ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAAC  440

seq1  AGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGC  490

seq1  CAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  990
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  530