BAC Information

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BAC

Clone NameB6Ng01-335J09
Chromosome3 (Build37)
Map Location 23,958,763 - 23,959,861
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335J09.bB6Ng01-335J09.g
ACCGA120765GA120766
length1,099791
definitionB6Ng01-335J09.b B6Ng01-335J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaaataatgttaaggagggtaatgggaaagagcgatatacttg
aaaaaatccaaggtagagaaaacaaatagcaaaaatatcttatagtaatg
ataaagtttggaaaataattaatgcatgccaaaatagaaacaaaaattat
ggatattaaaataatgagattaaataaaactaatagcaagaaaattaatt
aagatatataatattgaaaataaaagtaaaaattcagtaaattataaagg
taaatatatttttaacaacatgaaaaagtaaaaatgctgctaaaattaca
gtaaaaaggacacagtaaacctatatggaaatgaaagtagagaaaacagg
gaaaaagccagaaatattggagcaaacattaggtctcctgtaccatgaag
actatcgtgggagtgggcaggggctcagtgtaccctgtgatctcttgtct
ccttgtagtttatgctggtattgaccctggattgtaaatgtttccattgt
tcacctaacctatattcagtttagttggtcctctttcattgccctattga
catgattagtttagatatctgtgagcaagacagattgtttcttcctctga
gagtccatagactacgtttctggagatgtctgatgacctagctaggggat
gtctcgcaaatgtactgggagtctgggaactaactacagtgctgaggtat
ctacagaaggaggagttcactttgtcttttcaagattttccaagtgtcaa
tcattcatctgcatggattcactttatagttcttgagctttacaatactg
gataaccaataggtggacctgctggctgatctctgttccactgctatcat
gttcaagtgttatgttgcattgatatggtctgactgtgtgcttttctgct
ataattgtacttcctgcagattgttatttttgttcgtatctagtgatctg
ctttccaccactgcttcccaagattgtctctcatcatcgagctgtgacag
gataaattcagtctgctcaagctcttagatgagaggtacctcaacagtaa
cccaataggatccatttcatgatagcaactaactactaactgcctatct

gaattcatgaaattcttagccaaatgaatggaattagctaatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatggtatgcactcactaa
taagtgttacttgctcaaaagctccaaataaccaggatataattcactga
ccacatgaagctcaataagaaggaagaccaaaatgtgggtactttggtcc
ttcttagaaggagaacaaaataatctcaggagcaaatatggagatagagt
gtagagcagattataaaggaaaggctatccagagactgtcccacctggag
attcatcccatatacagttacaaaacccagacactattgtggatgccaag
aagtgcatgcttacaggagcctgacatagctgtcttctaagaaactctgc
cagagcttgacaaatacagagatagatgatggaagccaaccattgaactg
atcacagggtccacaatgaaggatttagagaaaggaccgaagaaactgaa
aagatttgcaaccccataggaagatcaataatatcaaccaaccagagccc
ccagggtctaaaccaccaacaaaggagtacaaaaggagggactcaaggct
tcagactcatatgtagcagagaatggcattgttgggtatctatgggagta
gaggctcttggttctgtgaaggctcaatgcctcagtgtaggggaatgttg
gggtagggaggctggactatgtggggtggggtgggggcaactttcatgga
cgagtggggatgtaaaaggattcctgatactaggcgatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23958763_23959861
seq2: B6Ng01-335J09.b_48_1146 (reverse)

seq1  AGATA-GCAGGTAGTAGGTAGTTGCTATCATGAAATGGATCCTATT-GGT  48
      ||||| |||| |||||| |||||||||||||||||||||||||||| |||
seq2  AGATAGGCAGTTAGTAGTTAGTTGCTATCATGAAATGGATCCTATTGGGT  50

seq1  TACTGTTGAGGTACCTCTTCATCTAAGAGCCTTGAGCAGACTGAATTTAT  98
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TACTGTTGAGGTACCTC-TCATCTAAGAG-CTTGAGCAGACTGAATTTAT  98

seq1  CCTGTCACAGCTCGATGATGAGAGACAATCTTGGGAAGCAGTGGTGGAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACAGCTCGATGATGAGAGACAATCTTGGGAAGCAGTGGTGGAAA  148

seq1  GCAGATCACTAGATACGAACAAAAATAACAATCTGCAGGAAGTACAATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCACTAGATACGAACAAAAATAACAATCTGCAGGAAGTACAATTA  198

seq1  TAGCAGAAAAGCACACAGTCAGACCATATCAATGCAACATAACACTTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAAAGCACACAGTCAGACCATATCAATGCAACATAACACTTGAA  248

seq1  CATGATAGCAGTGGAACAGAGATCAGCCAGCAGGTCCACCTATTGGTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGCAGTGGAACAGAGATCAGCCAGCAGGTCCACCTATTGGTTAT  298

seq1  CCAGTATTGTAAAGCTCAAGAACTATAAAGTGAATCCATGCAGATGAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTGTAAAGCTCAAGAACTATAAAGTGAATCCATGCAGATGAATG  348

seq1  ATTGACACTTGGAAAATCTTGAAAAGACAAAGTGAACTCCTCCTTCTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACTTGGAAAATCTTGAAAAGACAAAGTGAACTCCTCCTTCTGTA  398

seq1  GATACCTCAGCACTGTAGTTAGTTCCCAGACTCCCAGTACATTTGCGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTCAGCACTGTAGTTAGTTCCCAGACTCCCAGTACATTTGCGAGA  448

seq1  CATCCCCTAGCTAGGTCATCAGACATCTCCAGAAACGTAGTCTATGGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTAGCTAGGTCATCAGACATCTCCAGAAACGTAGTCTATGGACT  498

seq1  CTCAGAGGAAGAAACAATCTGTCTTGCTCACAGATATCTAAACTAATCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAAGAAACAATCTGTCTTGCTCACAGATATCTAAACTAATCAT  548

seq1  GTCAATAGGGCAATGAAAGAGGACCAACTAAACTGAATATAGGTTAGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAGGGCAATGAAAGAGGACCAACTAAACTGAATATAGGTTAGGTG  598

seq1  AACAATGGAAACATTTACAATCCAGGGTCAATACCAGCATAAACTACAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGAAACATTTACAATCCAGGGTCAATACCAGCATAAACTACAAG  648

seq1  GAGACAAGAGATCACAGGGTACACTGAGCCCCTGCCCACTCCCACGATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGAGATCACAGGGTACACTGAGCCCCTGCCCACTCCCACGATAG  698

seq1  TCTTCATGGTACAGGAGACCTAATGTTTGCTCCAATATTTCTGGCTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGTACAGGAGACCTAATGTTTGCTCCAATATTTCTGGCTTTTT  748

seq1  CCCTGTTTTCTCTACTTTCATTTCCATATAGGTTTACTGTGTCCTTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTTCTCTACTTTCATTTCCATATAGGTTTACTGTGTCCTTTTTA  798

seq1  CTGTAATTTTAGCAGCATTTTTACTTTTTCATGTTGTTAAAAATATATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTTAGCAGCATTTTTACTTTTTCATGTTGTTAAAAATATATTT  848

seq1  ACCTTTATAATTTACTGAATTTTTACTTTTATTTTCAATATTATATATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATAATTTACTGAATTTTTACTTTTATTTTCAATATTATATATCT  898

seq1  TAATTAATTTTCTTGCTATTAGTTTTATTTAATCTCATTATTTTAATATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTTCTTGCTATTAGTTTTATTTAATCTCATTATTTTAATATC  948

seq1  CATAATTTTTGTTTCTATTTTGGCATGCATTAATTATTTTCCAAACTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTTGTTTCTATTTTGGCATGCATTAATTATTTTCCAAACTTTA  998

seq1  TCATTACTATAAGATATTTTTGCTATTTGTTTTCTCTACCTTGGATTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTATAAGATATTTTTGCTATTTGTTTTCTCTACCTTGGATTTTT  1048

seq1  TCAAGTATATCGCTCTTTCCCATTACCCTCCTTAACATTATTTTTGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATATCGCTCTTTCCCATTACCCTCCTTAACATTATTTTTGAATT  1098

seq1  C  1099
      |
seq2  C  1099


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