BAC Information

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BAC

Clone NameB6Ng01-335J18
Chromosome3 (Build37)
Map Location 76,194,293 - 76,195,411
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335J18.bB6Ng01-335J18.g
ACCGA120781GA120782
length1,1561,090
definitionB6Ng01-335J18.b B6Ng01-335J18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgcacccaatttttttaattgagttatttcag
tttttggagtctaactacttgagatctttgtatattttggatattagccc
tctgccagatagagggttagtgaatatcttttccaaatctgtaggttgct
ggttttttttttttttttcttattgcattatcctttgtcagtctcatgaa
gtcccatttatcagttgttgttcttttcaaagcctgaagcattggtgttc
tgttaaggaacaatgcatttgagggtacttcccactttctcttctattag
atccactgtatctggttttatgtagagatgctagatccacttgtacttga
gctttgtacagggtgatagatatggatcaatttgcattcttcaacatgca
gattgccagttagaccattctttgaaggtacttttttctcactggatggt
tttagcttctttgtcaaatatcaagtgaccataggtatgtgggtttattt
ctgcatcttcaattctatttcattgatagacctgtctgtctcttattgtt
gagaattgttttcactatcctgggttttttgtttctttgtttttcttttt
tttttgtggtttttggttttttggatttatttttttccccatatgaaatt
aagaattgctctttccatgtctgtgaagaatagtgttgggattgggattg
cattgtatctgtatattgcttttggtatgatggccatttttactatgtta
atcctaccaatccatgagcatgggagatcttttcatcttctaaagccttt
gatttttttcttcagagacttgaagtccttgtcttcaaggaccaagatct
tcactttcaagatctttctctagcttgggttagcattaccccaatatatt
tacattatttgtgactattgcaagggcttattgctttcctgttttgcttc
tcagaccatttatcattttttataaaggaaggcattgatgtgcttgataa
ttatttatcccagccacttttgctgactagtttatcagcagtaggagtct
aatgtagatttttggggtcacttagtgcactaacccaatcatccacagta
ggataacctggattatctctggctcaattcaattccttcgccctggaatg
tgtagt
gaattctgggaagtgcaaaggccagacgtcctggcacatacagcaatgac
atacagagagaccttttattaacaaggcagaaggaaagggaaggccttga
ggcggtgcttagaccttcatattcatcatatgaaggaagaatataagtga
tcacaacaggaaatgtgtgttctccacacacaatgaacaaacacacatgc
acatactcatgaatacccacatgcagacacataatgcacatgaacacaca
caattttaatacaaagtcacattttatgtattaactacattatttttcta
tggctaacaaaatggagaaaagtatgggttccatttatttatttatttat
tcattcattcattcattcattcattcattcaatggatatatattttatga
agacacaatatcctcagccctgtggttttctggaatctggtattgtctgt
ataggaatacgtccccagagtaatagggcaaattgctgtctatgatatgt
aaagaggtcattgtggtttatcactctaggttctgaatgagaaaacaaag
tcccgtattccctgcagacagtgtaggtcctagattgaaaatcccttatt
cagcagagtttggctttaaagatcctacaatcagagtattcagagaggct
gatatatgtttgtgagattgtgttgaaaaatatcaatttttactgtgttg
catataaatatttatcagtatgctcctagccaatatgacaatttttaaaa
tagagcttttttttttttttttttttttttttttgagaaaaatgtctcca
cctagcaggcattccatcagttttcctgaacacctgatgagctgtgattg
aaatatgtggagagaagattaaaaagaacatcttgttgggattctcatac
taatatgcttgcttcccttttccaggcatgtaatttcagattcccgaatt
ctagaagaacatctttctctcagtttgcacaatactcaggtatttatata
tggtatatatgttattatgctgtatataattacttaggaaccttagataa
agagtacatgtgaggaagatactacatgtaataaaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76194293_76195411
seq2: B6Ng01-335J18.g_65_1154 (reverse)

seq1  AATGTTTTTTAAACTACATGTAGTAATACATCCCTCACAATTGTACTCAT  50
      ||||||||    | |||||||||   ||  | |||||||  ||||||| |
seq2  AATGTTTT----ATTACATGTAG---TATCTTCCTCACA--TGTACTCTT  41

seq1  TATAATACTAAAAGTATCATAAAGTAAATTAATAATA-ACAGCAATTAAT  99
      |||    ||  |||  || |      || |||| ||| ||||||  ||||
seq2  TAT----CT--AAGGTTCCT------AAGTAATTATATACAGCA--TAAT  77

seq1  AACATAATAATAACAATAATAATAAAATACCTGAGTATTGTGCAAACTGA  149
      ||||||   ||| |    |||   ||||||||||||||||||||||||||
seq2  AACATA--TATACC----ATATATAAATACCTGAGTATTGTGCAAACTGA  121

seq1  GAGAAAGATG-TCTTCTAAGAATTCCGGAATCTGAAATTACATGCCTGGA  198
      |||||||||| |||||| ||||||| ||||||||||||||||||||||||
seq2  GAGAAAGATGTTCTTCT-AGAATTCGGGAATCTGAAATTACATGCCTGGA  170

seq1  AAAGGGAAGCAAGCATATTAGTATGAGAATCCCAACAAGATGTTCTTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGCAAGCATATTAGTATGAGAATCCCAACAAGATGTTCTTTTT  220

seq1  AATCTTCTCTCCACATATTTCAATCACAGCTCATCAGGTGTTCAGGAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTCTCCACATATTTCAATCACAGCTCATCAGGTGTTCAGGAAAA  270

seq1  CTGATGGAATGCCTGCTAGGTGGAGACATTTTTCTCAAAAAAAAAAAAAA  348
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGATGGAATGCCTGCTAGGTGGAGACATTTTTCTC-AAAAAAAAAAAAA  319

seq1  AAAAAAAAAAAAAAAGCTCTATTTTAAAAATTGTCATATTGGCTAGGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCTCTATTTTAAAAATTGTCATATTGGCTAGGAGC  369

seq1  ATACTGATAAATATTTATATGCAACACAGTAAAAATTGATATTTTTCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATAAATATTTATATGCAACACAGTAAAAATTGATATTTTTCAAC  419

seq1  ACAATCTCACAAACATATATCAGCCTCTCTGAATACTCTGATTGTAGGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCACAAACATATATCAGCCTCTCTGAATACTCTGATTGTAGGAT  469

seq1  CTTTAAAGCCAAACTCTGCTGAATAAGGGATTTTCAATCTAGGACCTACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGCCAAACTCTGCTGAATAAGGGATTTTCAATCTAGGACCTACA  519

seq1  CTGTCTGCAGGGAATACGGGACTTTGTTTTCTCATTCAGAACCTAGAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGGGAATACGGGACTTTGTTTTCTCATTCAGAACCTAGAGTG  569

seq1  ATAAACCACAATGACCTCTTTACATATCATAGACAGCAATTTGCCCTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACAATGACCTCTTTACATATCATAGACAGCAATTTGCCCTATT  619

seq1  ACTCTGGGGACGTATTCCTATACAGACAATACCAGATTCCAGAAAACCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGACGTATTCCTATACAGACAATACCAGATTCCAGAAAACCAC  669

seq1  AGGGCTGAGGATATTGTGTCTTCATAAAATATATATCCATTGAATGAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGGATATTGTGTCTTCATAAAATATATATCCATTGAATGAATG  719

seq1  AATGAATGAATGAATGAATGAATAAATAAATAAATAAATGGAACCCATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAATGAATGAATAAATAAATAAATAAATGGAACCCATAC  769

seq1  TTTTCTCCATTTTGTTAGCCATAGAAAAATAATGTAGTTAATACATAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCATTTTGTTAGCCATAGAAAAATAATGTAGTTAATACATAAAA  819

seq1  TGTGACTTTGTATTAAAATTGTGTGTGTTCATGTGCATTATGTGTCTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTGTATTAAAATTGTGTGTGTTCATGTGCATTATGTGTCTGCA  869

seq1  TGTGGGTATTCATGAGTATGTGCATGTGTGTTTGTTCATTGTGTGTGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTATTCATGAGTATGTGCATGTGTGTTTGTTCATTGTGTGTGGAG  919

seq1  AACACACATTTCCTGTTGTGATCACTTATATTCTTCCTTCATATGATGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATTTCCTGTTGTGATCACTTATATTCTTCCTTCATATGATGAA  969

seq1  TATGAAGGTCTAAGCACCGCCTCAAGGCCTTCCCTTTCCTTCTGCCTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTCTAAGCACCGCCTCAAGGCCTTCCCTTTCCTTCTGCCTTGT  1019

seq1  TAATAAAAGGTCTCTCTGTATGTCATTGCTGTATGTGCCAGGACGTCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGGTCTCTCTGTATGTCATTGCTGTATGTGCCAGGACGTCTGG  1069

seq1  CCTTTGCACTTCCCAGAATTC  1119
      |||||||||||||||||||||
seq2  CCTTTGCACTTCCCAGAATTC  1090