BAC Information

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BAC

Clone NameB6Ng01-336G21
Chromosome3 (Build37)
Map Location 7,582,380 - 7,724,620
singlet/doubletdoublet
Overlap geneIl7
Upstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G21.bB6Ng01-336G21.g
ACCGA121353GA121354
length1,1471,166
definitionB6Ng01-336G21.b B6Ng01-336G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,723,478 - 7,724,620)(7,582,380 - 7,583,571)
sequence
gaattccagggccaggaagcgggagttggtggtttggggatcagggtgag
caggagggtataggcgactttgtggatagcatttgaaatgtaaatgaaga
aaatatctaataaaaatgccttattaaaaaaaaaaaagaggaaggactgt
ttgttttgtccatttccacaggttcatccttggttgcctttactcatatg
cctgactagaacattctggcagagggggcatttggagtagctgcttcact
ccatagcagacaggaaacatagaaaaggagctgactgtgacaagtgctct
tcagaccattccccaagtgaaaatattccttcatcaaggtaccatctcct
ggtttctaatactcctcaaacaagtgccaagcgttcaacactgaacctgt
gttaccatagttccagtacaataatttccataaacattttttttgttttg
cctgtctgtagtcactcccatctttatcctatttctaattgatagtatct
ctaaaatttggttattttgtgatgttatataaatagaataatgtcacatg
tgacccacatggttcacattttaagacatttcagagacatgcaagttgtc
acaaatgtaaatattaatcctcacttaataactggtcatattaaagtgtt
ttaatattctgcagcacttaaccatttttccatatacgacccaagctttt
tccatgctggaagtgtaaccattgaagggaggataatatctaggtttgca
tgttctcagggaaatagttttaatttatttgggttgttttgaaaaatgag
attgttatgcaggatgataagaaactgtcaagtttttttccatataatct
gtgctatttttacattccaaccagaaatgagcttctttccatcatagcca
acatttgttcacagtatattcatcttgacatgtaccagtatagagtgcat
caattcagagtattttttcttcttcagctcttcatttcctcttatggtgt
atagaacctgataatatttataaatactttaaacattccatccatgttac
acctgaaagctacctcacagggcttgcttgatgcctcaaactgtgattct
cagtagcaaacagaataagaactaagtatgagaacccatcttataga

gaattctcattagatcactctgagaaaaattgtacacatttcttgcataa
atggcttctaggtggtatctaagtgtcaattggctgcttccttgatttcc
ttgtttttgagattgatcctcactatccaaaatatttaatattaacatct
aaaagtacttaagattcagtcaagtttggttctagattttgaaaaattgt
ttcctataaaaatgttctatttttagtacaatcattacaacccatgctta
gacaaatcttagtccatcaaagtctcctgaaagggaccttataaaatatt
caacttatgttttctgtttgcagaatcctgtttcaattgctacaaaattt
acagcttaacggactgtattttgaatttcatttaatcgataatttaaaag
aaaagtcacttaaacttgatcaagtacttgttatgcatctatcatgtgaa
atttagtaatgaagatacatctatgaaaactatatatatttcattatctc
aatgtattattgtttagtggcgaaaacagatattaatccaatagccacaa
ataattaccaacttggtaattgtgaaattatgaaagataaatggtattac
cctggtagattttgttgtcgttgttgttaacatgacacaaattagttatc
ttagaaggggaacctcagtaaagaaaatacctttattatgttcatgtagg
cttgtctgtagggaattttattgattaataattgatgtgggagtacctat
accaatgtggatggttccagcattatacaagagcaaactgagcaagccac
agggaaaatgccagaaagaaccatttctttatggtctctgcttcagtacc
tgctttcaggcttctgtcttgagttcctgccctgatttcctttttggtag
actaccaccatgaactgaaagaacctgtgtgccccaaggtgctttgggtc
atgaattttaaccaagcccgggaccagttctgcacaaagtcagccaggca
taaatgcacaggaggctcaaaacatagagacaggacagatagctcctctg
gagagaagtaatatatcagtgttgctggataaagaaaccaaggaggacca
atatagccatctaattaaaaaaatggggggtctgggagaggattcagtct
caaaacatgtttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7723478_7724620
seq2: B6Ng01-336G21.b_47_1193 (reverse)

seq1  TCTAT-AGATGGG-TCTCATAACTTAGTCTTAATTCTGTTTGCTACTGAA  48
      ||||| ||||||| |||||| |||||||  | |||||||||||||||| |
seq2  TCTATAAGATGGGTTCTCAT-ACTTAGTTCTTATTCTGTTTGCTACTG-A  48

seq1  GAATCACAGTTTGAGCAATCAAGCAAGCCCTGTGAGGTAGCTTTCA-GTG  97
      |||||||||||||||  ||||||||||||||||||||||||||||| |||
seq2  GAATCACAGTTTGAGGCATCAAGCAAGCCCTGTGAGGTAGCTTTCAGGTG  98

seq1  T-ACATGGATGGAATGTTTAAAGTA-TTATAAATATTATCAGGTTCTATA  145
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAACATGGATGGAATGTTTAAAGTATTTATAAATATTATCAGGTTCTATA  148

seq1  CACCATAAGAGGAAATGAAGAGCTGAAGAAG-AAAAATACTCTGAATTGA  194
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCATAAGAGGAAATGAAGAGCTGAAGAAGAAAAAATACTCTGAATTGA  198

seq1  TGCACTCTATACTGGTACATGTCAAGATGAATATACTGTGAACAAATGTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTATACTGGTACATGTCAAGATGAATATACTGTGAACAAATGTT  248

seq1  GGCTATGATGGAAAGAAGCTCATTTCTGGTTGGAATGTAAAAATAGCACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGATGGAAAGAAGCTCATTTCTGGTTGGAATGTAAAAATAGCACA  298

seq1  GATTATATGGAAAAAAACTTGACAGTTTCTTATCATCCTGCATAACAATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATGGAAAAAAACTTGACAGTTTCTTATCATCCTGCATAACAATC  348

seq1  TCATTTTTCAAAACAACCCAAATAAATTAAAACTATTTCCCTGAGAACAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCAAAACAACCCAAATAAATTAAAACTATTTCCCTGAGAACAT  398

seq1  GCAAACCTAGATATTATCCTCCCTTCAATGGTTACACTTCCAGCATGGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTAGATATTATCCTCCCTTCAATGGTTACACTTCCAGCATGGAA  448

seq1  AAAGCTTGGGTCGTATATGGAAAAATGGTTAAGTGCTGCAGAATATTAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGGGTCGTATATGGAAAAATGGTTAAGTGCTGCAGAATATTAAA  498

seq1  ACACTTTAATATGACCAGTTATTAAGTGAGGATTAATATTTACATTTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAATATGACCAGTTATTAAGTGAGGATTAATATTTACATTTGTG  548

seq1  ACAACTTGCATGTCTCTGAAATGTCTTAAAATGTGAACCATGTGGGTCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTGCATGTCTCTGAAATGTCTTAAAATGTGAACCATGTGGGTCAC  598

seq1  ATGTGACATTATTCTATTTATATAACATCACAAAATAACCAAATTTTAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATTATTCTATTTATATAACATCACAAAATAACCAAATTTTAGA  648

seq1  GATACTATCAATTAGAAATAGGATAAAGATGGGAGTGACTACAGACAGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATCAATTAGAAATAGGATAAAGATGGGAGTGACTACAGACAGGC  698

seq1  AAAACAAAAAAAATGTTTATGGAAATTATTGTACTGGAACTATGGTAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAATGTTTATGGAAATTATTGTACTGGAACTATGGTAACA  748

seq1  CAGGTTCAGTGTTGAACGCTTGGCACTTGTTTGAGGAGTATTAGAAACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGTGTTGAACGCTTGGCACTTGTTTGAGGAGTATTAGAAACCA  798

seq1  GGAGATGGTACCTTGATGAAGGAATATTTTCACTTGGGGAATGGTCTGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTACCTTGATGAAGGAATATTTTCACTTGGGGAATGGTCTGAA  848

seq1  GAGCACTTGTCACAGTCAGCTCCTTTTCTATGTTTCCTGTCTGCTATGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTGTCACAGTCAGCTCCTTTTCTATGTTTCCTGTCTGCTATGGA  898

seq1  GTGAAGCAGCTACTCCAAATGCCCCCTCTGCCAGAATGTTCTAGTCAGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCAGCTACTCCAAATGCCCCCTCTGCCAGAATGTTCTAGTCAGGC  948

seq1  ATATGAGTAAAGGCAACCAAGGATGAACCTGTGGAAATGGACAAAACAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTAAAGGCAACCAAGGATGAACCTGTGGAAATGGACAAAACAAA  998

seq1  CAGTCCTTCCTCTTTTTTTTTTTTAATAAGGCATTTTTATTAGATATTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTCCTCTTTTTTTTTTTTAATAAGGCATTTTTATTAGATATTTT  1048

seq1  CTTCATTTACATTTCAAATGCTATCCACAAAGTCGCCTATACCCTCCTGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTACATTTCAAATGCTATCCACAAAGTCGCCTATACCCTCCTGC  1098

seq1  TCACCCTGATCCCCAAACCACCAACTCCCGCTTCCTGGCCCTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGATCCCCAAACCACCAACTCCCGCTTCCTGGCCCTGGAATTC  1147


seq1: chr3_7582380_7583571
seq2: B6Ng01-336G21.g_65_1230

seq1  GAATTCTCATTAGATCACTCTGAGAAAAATTGTACACATTTCTTGCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTAGATCACTCTGAGAAAAATTGTACACATTTCTTGCATAA  50

seq1  ATGGCTTCTAGGTGGTATCTAAGTGTCAATTGGCTGCTTCCTTGATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTAGGTGGTATCTAAGTGTCAATTGGCTGCTTCCTTGATTTCC  100

seq1  TTGTTTTTGAGATTGATCCTCACTATCCAAAATATTTAATATTAACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGAGATTGATCCTCACTATCCAAAATATTTAATATTAACATCT  150

seq1  AAAAGTACTTAAGATTCAGTCAAGTTTGGTTCTAGATTTTGAAAAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACTTAAGATTCAGTCAAGTTTGGTTCTAGATTTTGAAAAATTGT  200

seq1  TTCCTATAAAAATGTTCTATTTTTAGTACAATCATTACAACCCATGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAAAAATGTTCTATTTTTAGTACAATCATTACAACCCATGCTTA  250

seq1  GACAAATCTTAGTCCATCAAAGTCTCCTGAAAGGGACCTTATAAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCTTAGTCCATCAAAGTCTCCTGAAAGGGACCTTATAAAATATT  300

seq1  CAACTTATGTTTTCTGTTTGCAGAATCCTGTTTCAATTGCTACAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATGTTTTCTGTTTGCAGAATCCTGTTTCAATTGCTACAAAATTT  350

seq1  ACAGCTTAACGGACTGTATTTTGAATTTCATTTAATCGATAATTTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAACGGACTGTATTTTGAATTTCATTTAATCGATAATTTAAAAG  400

seq1  AAAAGTCACTTAAACTTGATCAAGTACTTGTTATGCATCTATCATGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACTTAAACTTGATCAAGTACTTGTTATGCATCTATCATGTGAA  450

seq1  ATTTAGTAATGAAGATACATCTATGAAAACTATATATATTTCATTATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAATGAAGATACATCTATGAAAACTATATATATTTCATTATCTC  500

seq1  AATGTATTATTGTTTAGTGGCGAAAACAGATATTAATCCAATAGCCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTATTGTTTAGTGGCGAAAACAGATATTAATCCAATAGCCACAA  550

seq1  ATAATTACCAACTTGGTAATTGTGAAATTATGAAAGATAAATGGTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCAACTTGGTAATTGTGAAATTATGAAAGATAAATGGTATTAC  600

seq1  CCTGGTAGATTTTGTTGTCGTTGTTGTTAACATGACACAAATTAGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGATTTTGTTGTCGTTGTTGTTAACATGACACAAATTAGTTATC  650

seq1  TTAGAAGGGGAACCTCAGTAAAGAAAATACCTTTATTATGTTCATGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGGAACCTCAGTAAAGAAAATACCTTTATTATGTTCATGTAGG  700

seq1  CTTGTCTGTAGGGAATTTTATTGATTAATAATTGATGTGGGAGTACCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTAGGGAATTTTATTGATTAATAATTGATGTGGGAGTACCTAT  750

seq1  ACCAATGTGGATGGTTCCAGCATTATACAAGAGCAAACTGAGCAAGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTGGATGGTTCCAGCATTATACAAGAGCAAACTGAGCAAGCCAC  800

seq1  AGGGAAAATGCCAGAAAGAACCATTTCTTTATGGTCTCTGCTTCAGTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAATGCCAGAAAGAACCATTTCTTTATGGTCTCTGCTTCAGTACC  850

seq1  TGCTTTCAGGCTTCTGTCTTGAGTTCCTGCCCTGATTTCCTTTTTGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGGCTTCTGTCTTGAGTTCCTGCCCTGATTTCCTTTTTGGTAG  900

seq1  ACTACCACCATGAACTGAAAGAAACCTGTGTGCCCCAAGGTGCTTTGGGT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTACCACCATGAACTGAAAG-AACCTGTGTGCCCCAAGGTGCTTTGGGT  949

seq1  CATGAATTTTAACCAAGCCCCGGGACCAAGTTCTGCAACAAAAGTCAGCC  1000
      ||||||||||||||||| ||||||||| |||||||||   ||||||||||
seq2  CATGAATTTTAACCAAG-CCCGGGACC-AGTTCTGCA--CAAAGTCAGCC  995

seq1  AGGCATAAATGCACAGGGAGGCTCAAAACATAGAAGACAGGAACCAGAAT  1050
      ||||||||||||||| ||||||||||||||||| ||||||||  ||||  
seq2  AGGCATAAATGCACA-GGAGGCTCAAAACATAG-AGACAGGA--CAGA--  1039

seq1  TAGCTTCCTCTGGAGAGAAAGTAATATATCAGTGGTGGCTGAATAAAAGA  1100
      |||| |||||||||||| ||||||||||||||| || |||| || |||||
seq2  TAGC-TCCTCTGGAGAG-AAGTAATATATCAGT-GTTGCTGGAT-AAAGA  1085

seq1  AACCAAAAGGAGGGAACAAATATAGCATCCTAATTAAAAAAAAAAGGGGG  1150
      ||||  |||||||  || ||||||||   |||||||||||||      ||
seq2  AACC--AAGGAGG--ACCAATATAGCCATCTAATTAAAAAAA-----TGG  1126

seq1  GGGGTCTGGAAGAAGGTATTCAGTCAAAAAACATGTTAAGAA  1192
      ||||||||| |||  | ||||||||  |||||||||| ||||
seq2  GGGGTCTGGGAGA--GGATTCAGTCTCAAAACATGTTTAGAA  1166


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