BAC Information

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BAC

Clone NameB6Ng01-339E10
Chromosome3 (Build37)
Map Location 3,903,577 - 3,904,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157
Downstream geneLOC100039167, LOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339E10.bB6Ng01-339E10.g
ACCGA123314GA123315
length1,1371,156
definitionB6Ng01-339E10.b B6Ng01-339E10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttaggaaaaaaatccacatttacctagaaaatgtcatttgtt
aattgaaagtttcttggtgatcctagtacttgcttaaaactaaaattctc
aaaaattctaattcagacacaacttctacacataaatgaaataatatgta
catgaaagggaaatctaagattttcatattttggcactcaaattatcaat
tttatctcatatgcatttaaatgattcataacattttaataagtaaaatt
tttcagttattaattaactaaaatattccatggattatgtgtgtgaacaa
tcatgctcctcatttaataatcaaagtataaggttatcggtcaagactag
ctttcctgcaatcaaagagacagtacttagaagtacagcagtatttgcag
ctatgatactgttaaaaggcagaaaaactgacagttcttaaaaataataa
aatgagccaggtggtgttggcgcatacctttaatcccacttgggaggcag
aggcaggcagatttctgagttcgaggccagcctggtctacagagtgagtt
ccaggacagccaagactacacagaataacgctgtctcaaaaaaaaaaaaa
aaaaaaaaaaaaagtagaaaatactactaataaaatgtggtggtactggt
agtggggagaagtgtaagtatgcaaggaaaggctcagggctcagataagc
aactcagacagagatatcagaaatattcatgctaatttggagggcaatag
aaatagcttggtcaaagaaccagcatactctaaattcagacaggcagtat
aaattattgatccagaaagatgcagcaattcataaatctatattttcatc
ttatcgacaaaaaaaaaataaaaataagtttcacaaacatataaaaataa
gtttccacaaccattcagattacccaaatcctctgtcccccattttctgc
taatgcctaccaatagtcagttttacctgccatctatgtagatggatagg
aaatatatccttgtatctatatctagaagataaagatgacttggaggcca
acactcacatcacatcatccacacaagtcagtagataatgtgttacatag
aaccaaggaggtcatatatgtgccatgaatattcaac

gaattcttttcttgtccagtctatttggagttctgtaggcttcttgtatg
ttcatgggcatgtcattctttaggtttgggaagttttcttctataatttt
gttgaaaatatttgctgtccctttaagtggaaaatcttcattctcatcaa
ctcctcttatccgtaggtttggtcttctcattgtgtcctggatttcctgg
atgttttgagttacgatctttttgtgttttgttctttgattgttttgccg
atgttctctatggaatattctgcacctgagattctctctctcatctcttg
tattctgttgctgatgctcgcatctatggttccagatttctttcctactg
tttctatctccagtgttgcctcactttgggttttctttaatgtgcctact
tccctttttaggtctcagatggttttattcaattccattacctatttggt
cgtgttttcctgcaaatttttaagggatttttgtgtttcctctttaaggt
cttctacctgtttagctgtgttctcctgtatttctttaagtgagttatta
aagtccttcttgatgtactctaccatcatcatgagatatgcttttaaatc
cgagtctagcttttcagatgtgttggggtgcccaggactaggtggggtgg
gagtgctgcattctgatgatggtgagtggtcttgatttctgttagtagta
ttcttacatttgcctttcaccatctggtaatctctggagctagttgttat
tgttgtctctggttagagcttgttcctcaggtgattatgttagcctctat
cagcagaccttagagactagatctctccttagtttcagtggtcagagtac
tctctgcaggcaagctctcctcttgcagggaaagtgttcagatatctggt
gttcgaacctgccacctgggcagaagttgtgttccactcacagaggttct
ttaagatcccgtcgagggtctgtgagactttgggggtgtcagaaacttca
cgtgcagacctcgttgctgggtgatcggaggacttgtgacctttgatcat
gcggatatctgtcttcttaagttaatgcaggctcaggtcctgctggatgg
atagcgagcgtggttaactaccagagcttgagatatccagtgtggcgcat
atcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3903577_3904727
seq2: B6Ng01-339E10.b_46_1182 (reverse)

seq1  GTTGATTATTCATGGCACATATATGGACTTTCTTTTGTTCTATGTAACAC  50
      ||||| |||||||||||||||||||  |  || || ||||||||||||||
seq2  GTTGAATATTCATGGCACATATATGACC--TCCTTGGTTCTATGTAACAC  48

seq1  AATAAATCTACTGACTTTGTGTGTGTG-TGTG-TGTGTGTGTGTGTGCTC  98
      | |  |||||||||| |||||||  || |||| |||| |||| ||  |||
seq2  ATT--ATCTACTGAC-TTGTGTGGATGATGTGATGTGAGTGT-TGGCCTC  94

seq1  CAATGTCATCTTTTTTATCTTCTTAGATATAGATACAAAGAATTATATTT  148
      ||| ||||||   ||||||||| ||||||||||||||| ||  |||||||
seq2  CAA-GTCATC---TTTATCTTC-TAGATATAGATACAAGGA--TATATTT  137

seq1  CCCTTATTCCATCTACAATAGATTGCAAGTAAAACTGACTATTGGTAGGC  198
      ||  || ||||||||| |||||| ||| ||||||||||||||||||||||
seq2  CC--TA-TCCATCTAC-ATAGATGGCAGGTAAAACTGACTATTGGTAGGC  183

seq1  ATTAGCAGAAAATGGGGGACAGAGGATTTGGGTAATCTGAATGTTTGT-G  247
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  ATTAGCAGAAAATGGGGGACAGAGGATTTGGGTAATCTGAATGGTTGTGG  233

seq1  AAACTTATTTTTATATGTTTGTGAAACTTATTTTTA-TTTTTTTTTGTCG  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACTTATTTTTATATGTTTGTGAAACTTATTTTTATTTTTTTTTTGTCG  283

seq1  ATAAGATGAAAATATAGATTTATGAATTGCTGCATCTTTCTGGATCAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAAAATATAGATTTATGAATTGCTGCATCTTTCTGGATCAATA  333

seq1  ATTTATACTGCCTGTCTGAATTTAGAGTATGCTGGTTCTTTGACCAAGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTGCCTGTCTGAATTTAGAGTATGCTGGTTCTTTGACCAAGCT  383

seq1  ATTTCTATTGCCCTCCAAATTAGCATGAATATTTCTGATATCTCTGTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTGCCCTCCAAATTAGCATGAATATTTCTGATATCTCTGTCTG  433

seq1  AGTTGCTTATCTGAGCCCTGAGCCTTTCCTTGCATACTTACACTTCTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTATCTGAGCCCTGAGCCTTTCCTTGCATACTTACACTTCTCCC  483

seq1  CACTACCAGTACCACCACATTTTATTAGTAGTATTTTCTACTTTTTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTACCAGTACCACCACATTTTATTAGTAGTATTTTCTAC-TTTTTTTT  532

seq1  TTTTTTTTTTTTTTTTTTGAGACAGCGTTATTCTGTGTAGTCTTGGCTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGAGACAGCGTTATTCTGTGTAGTCTTGGCTGT  582

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  632

seq1  TGCCTCTGCCTCCCAAGTGGGATTAAAGGTATGCGCCAACACCACCTGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGGGATTAAAGGTATGCGCCAACACCACCTGGC  682

seq1  TCATTTTATTATTTTTAAGAACTGTCAGTTTTTCTGCCTTTTAACAGTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATTATTTTTAAGAACTGTCAGTTTTTCTGCCTTTTAACAGTAT  732

seq1  CATAGCTGCAAATACTGCTGTACTTCTAAGTACTGTCTCTTTGATTGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGCAAATACTGCTGTACTTCTAAGTACTGTCTCTTTGATTGCAG  782

seq1  GAAAGCTAGTCTTGACCGATAACCTTATACTTTGATTATTAAATGAGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTAGTCTTGACCGATAACCTTATACTTTGATTATTAAATGAGGAG  832

seq1  CATGATTGTTCACACACATAATCCATGGAATATTTTAGTTAATTAATAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGTTCACACACATAATCCATGGAATATTTTAGTTAATTAATAAC  882

seq1  TGAAAAATTTTACTTATTAAAATGTTATGAATCATTTAAATGCATATGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTTACTTATTAAAATGTTATGAATCATTTAAATGCATATGAG  932

seq1  ATAAAATTGATAATTTGAGTGCCAAAATATGAAAATCTTAGATTTCCCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGATAATTTGAGTGCCAAAATATGAAAATCTTAGATTTCCCTT  982

seq1  TCATGTACATATTATTTCATTTATGTGTAGAAGTTGTGTCTGAATTAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACATATTATTTCATTTATGTGTAGAAGTTGTGTCTGAATTAGAA  1032

seq1  TTTTTGAGAATTTTAGTTTTAAGCAAGTACTAGGATCACCAAGAAACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGAATTTTAGTTTTAAGCAAGTACTAGGATCACCAAGAAACTTT  1082

seq1  CAATTAACAAATGACATTTTCTAGGTAAATGTGGATTTTTTTCCTAAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACAAATGACATTTTCTAGGTAAATGTGGATTTTTTTCCTAAGAG  1132

seq1  AATTC  1151
      |||||
seq2  AATTC  1137


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