BAC Information

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BAC

Clone NameB6Ng01-340D08
Chromosome3 (Build37)
Map Location 107,785,252 - 107,786,387
singlet/doubletsinglet
Overlap geneGstm2
Upstream geneKcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701
Downstream geneGstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340D08.bB6Ng01-340D08.g
ACCGA123982GA123983
length1,135208
definitionB6Ng01-340D08.b B6Ng01-340D08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgcttagtcgggtccctgactggggaagcactgggactcagg
actacagctagtgctgcgtagacagttcactgctgctgcaggattttatc
ttaaattgttcaatatttaggcatcctgttcctttccttttattttcctc
ctcagcaacatcttgatgtttgtctgtaaaatcattatagtgggatttca
ctgccatcttcatccatcttctctagtgttgcttctatgaggcacagttc
tgagctcagtagtgcatggaagcatgcatccctgtccaggcatgcagagt
ggcaggcatgcctgactgtagtgcacgtgtgataggcacaaaccctactt
tattagagatttgggggatcaaggccatggtccaatgggaatcttagcat
gggatcttcttttctgtccttgctgcacaggtgatgtgtttttcttagtt
ttcattctgctccaggcttctcggctctggagattgtgtgagaacagttg
gacagtgccgtgggagagtgtgggaggctgcagtccaaggccagccaagc
ctcgtctcctgggtacaggccgccctggaactttgaattcataacagctt
atctgggcactgtactggaaagatagcacacagcacaatgccattctgta
gaatgttctttagcagggccgagagaaatgggatggacacactaagtatg
cattcagatgccagtgttccgagtttaggtttttctgcatcaggagaatg
gccaaaggccatgtcattgtctccgtgcgggctcacctatctctagcttc
attcagtcaggatttactgaggtactgggagagatctttgctgtcttcca
aagtacactggcatgttactggtccctttgatctgcttggtccctcccca
tgtggaaacacaggcaagaaggagcttgcttgtaaaataaataaataaat
aaataaataatcgggagtttgtataaacagatagcacaaggaatttcttg
cttgtgagtgacccagggagtggcagggatgcagactctgcagttcccgc
tggctgagccttgtgtgtcagctttcctctgatgaatgcagagagccaca
agcgcttgtcctgcaaggattctctgggagtgctc
ctaacagtgggaatgggaggctgtgtctgactcttgtgcctgtttgtggg
acccttctcctcctactgggtagccgcgtccagtcttgatgtgatggtgt
gtgcctggtcttattgtaacttgttataccactctgtttggtcgtagtcc
ccaggaggcttgctcttttctaaagggcagcaggggtggggtgagtaggg
ggaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107785252_107786387
seq2: B6Ng01-340D08.b_48_1182 (reverse)

seq1  GAGCACT-CCAGAGAATCC-TGCAGAAC-AGCGC-TGT-GCTCTCTGCAT  45
      ||||||| ||||||||||| ||||| || ||||| ||| |||||||||||
seq2  GAGCACTCCCAGAGAATCCTTGCAGGACAAGCGCTTGTGGCTCTCTGCAT  50

seq1  TCATCAGGAGGAAGCCTGACACAC-AGGCTCAGCCAGCGGGAACTGCAAG  94
      |||||| ||||||  ||||||||| |||||||||||||||||||||| ||
seq2  TCATCA-GAGGAAAGCTGACACACAAGGCTCAGCCAGCGGGAACTGC-AG  98

seq1  AGTCTGCATCCCTGCCCACTCCCTTGGTTCACTCACCAAGCAAGAAATTC  144
      |||||||||||||| |||||||| ||| ||||||| ||||||||||||||
seq2  AGTCTGCATCCCTG-CCACTCCC-TGGGTCACTCA-CAAGCAAGAAATTC  145

seq1  CTTGTTGCTATCTGTTTATACAAACTCCCGATTATTTATTTATTTATTTA  194
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTG-TGCTATCTGTTTATACAAACTCCCGATTATTTATTTATTTATTTA  194

seq1  TTTATTTTTACAAGCAAGCTCCTTCTTGCCTGTGTTTCCACATTGGGGAG  244
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTA-TTTTACAAGCAAGCTCCTTCTTGCCTGTGTTTCCACA-TGGGGAG  242

seq1  GGACCAAGCAGATCAAAGGGACCAGTAACATGCCAGTGTACTTTGGAAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGCAGATCAAAGGGACCAGTAACATGCCAGTGTACTTTGGAAGA  292

seq1  CAGCAAAGATCTCTCCCAGTACCTCAGTAAATCCTGACTGAATGAAGCTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGATCTCTCCCAGTACCTCAGTAAATCCTGACTGAATGAAGCTA  342

seq1  GAGATAGGTGAGCCCGCACGGAGACAATGACATGGCC-TTGGCCATTCTC  393
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGATAGGTGAGCCCGCACGGAGACAATGACATGGCCTTTGGCCATTCTC  392

seq1  CTGATGCAGAAAAACCTAAACTCGGAACACTGGCATCTGAATGCATACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGAAAAACCTAAACTCGGAACACTGGCATCTGAATGCATACTT  442

seq1  AGTGTGTCCATCCCATTTCTCTCGGCCCTGCTAAAGAACATTCTACAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCCATCCCATTTCTCTCGGCCCTGCTAAAGAACATTCTACAGAA  492

seq1  TGGCATTGTGCTGTGTGCTATCTTTCCAGTACAGTGCCCAGATAAGCTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGTGCTGTGTGCTATCTTTCCAGTACAGTGCCCAGATAAGCTGT  542

seq1  TATGAATTCAAAGTTCCAGGGCGGCCTGTACCCAGGAGACGAGGCTTGGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCAAAGTTCCAGGGCGGCCTGTACCCAGGAGACGAGGCTTGGC  592

seq1  TGGCCTTGGACTGCAGCCTCCCACACTCTCCCACGGCACTGTCCAACTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGGACTGCAGCCTCCCACACTCTCCCACGGCACTGTCCAACTGT  642

seq1  TCTCACACAATCTCCAGAGCCGAGAAGCCTGGAGCAGAATGAAAACTAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACAATCTCCAGAGCCGAGAAGCCTGGAGCAGAATGAAAACTAAG  692

seq1  AAAAACACATCACCTGTGCAGCAAGGACAGAAAAGAAGATCCCATGCTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACATCACCTGTGCAGCAAGGACAGAAAAGAAGATCCCATGCTAA  742

seq1  GATTCCCATTGGACCATGGCCTTGATCCCCCAAATCTCTAATAAAGTAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCATTGGACCATGGCCTTGATCCCCCAAATCTCTAATAAAGTAGG  792

seq1  GTTTGTGCCTATCACACGTGCACTACAGTCAGGCATGCCTGCCACTCTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCCTATCACACGTGCACTACAGTCAGGCATGCCTGCCACTCTGC  842

seq1  ATGCCTGGACAGGGATGCATGCTTCCATGCACTACTGAGCTCAGAACTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGACAGGGATGCATGCTTCCATGCACTACTGAGCTCAGAACTGT  892

seq1  GCCTCATAGAAGCAACACTAGAGAAGATGGATGAAGATGGCAGTGAAATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATAGAAGCAACACTAGAGAAGATGGATGAAGATGGCAGTGAAATC  942

seq1  CCACTATAATGATTTTACAGACAAACATCAAGATGTTGCTGAGGAGGAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATAATGATTTTACAGACAAACATCAAGATGTTGCTGAGGAGGAAA  992

seq1  ATAAAAGGAAAGGAACAGGATGCCTAAATATTGAACAATTTAAGATAAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAAAGGAACAGGATGCCTAAATATTGAACAATTTAAGATAAAA  1042

seq1  TCCTGCAGCAGCAGTGAACTGTCTACGCAGCACTAGCTGTAGTCCTGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGCAGCAGTGAACTGTCTACGCAGCACTAGCTGTAGTCCTGAGT  1092

seq1  CCCAGTGCTTCCCCAGTCAGGGACCCGACTAAGCAAAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCTTCCCCAGTCAGGGACCCGACTAAGCAAAGAATTC  1135