BAC Information

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BAC

Clone NameB6Ng01-340N20
Chromosome3 (Build37)
Map Location 120,633,018 - 120,785,295
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N20.bB6Ng01-340N20.g
ACCGA124429GA124430
length435865
definitionB6Ng01-340N20.b B6Ng01-340N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,633,018 - 120,633,458)(120,784,433 - 120,785,295)
sequence
actcctagtcactcccattcttggggtgtaatagtggggtgatgggcaag
caacgaaccaggagctgtcacgccatatcaggtgctgaaacgtctcgctg
cgggttataaaagcagcgccattttcccggtttgggatcttcctgagaag
caagcaataaagcttttgccgcggaagattctggtttgttgcgtctttct
tgccggtcgagcgggacgcaatagtaacccagatatattagtatcgtaaa
aaatggcaaatgctgtatttttttctcttgtatgtagttgttagcatcta
aggtttcaaaatgtgtgctacagcccgagtaaccacagagattcagtgcc
tagtaagagactagaggcaggagatggtctcccaaggagtgtgttaagct
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

gaattcagacatgtttgccccttcctttggcctctcctcatgcttctgtt
tgttttcctggctaagggaagctgctataagaggcagtgcctggcaagca
gatgcgactgtgtcagagctgtttagtcagaactcacagggctgcctgat
atacagtgccatcaggttgctgctgagggagacacctatgattccattaa
ttatttagggatccaacatagccacaattaatgaatttgaatgtattaca
atgatcttaatcagaggaacagatgcaaaatgacaatatgatacacacaa
tttttccccagcgaattgcacactattaaggtctgttgcagtcactgaat
ccagatgtttctatacacttactgaccaggaaagatcccggtttcattac
atgaaagaaaataagttcatcctgtcatctcgcagagttaaagtgggatc
caattcagcagctggcgaggcggctaagttggtttgcaataatcccgctt
ctgctgcaggactggctgagtggcgaagtctatcgcacccgggcttagca
ttcactttacattatctttatgctttctcagatgagatggtttgctcctg
ctccaaaagcctctgatggactaaacaagctttatacacacatcacacga
gaagaaattgacctacttccgtggtgggtaaattcattaagatcaggata
atgaaagcaaatcgccatgataaaatgggaaacgctcgtaacttctcaag
aatatataccaaaaagattgtcagatttctgaggcgagccaggctacaca
tcacagcgtcttaaccttcttatcctaggaattgtataaaagaaataatg
gggggggggggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120633018_120633458
seq2: B6Ng01-340N20.b_46_486

seq1  GAATTCACTCCTAGTCACTCCCATTCTTGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTTGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  TCGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATAGTAACCCAGATATATTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATAGTAACCCAGATATATTAGTAT  250

seq1  CGTAAAAAATGGCAAATGCTGTATTTTTTTCTCTTGTATGTAGTTGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAAAATGGCAAATGCTGTATTTTTTTCTCTTGTATGTAGTTGTTAG  300

seq1  CATCTAAGGTTTCAAAATGTGTGCTACAGCCCGAGTAACCACAGAGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGGTTTCAAAATGTGTGCTACAGCCCGAGTAACCACAGAGATTC  350

seq1  AGTGCCTAGTAAGAGACTAGAGGCAGGAGATGGTCTCCCAAGGAGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAGTAAGAGACTAGAGGCAGGAGATGGTCTCCCAAGGAGTGTGT  400

seq1  TAAGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  441


seq1: chr3_120784433_120785295
seq2: B6Ng01-340N20.g_69_933 (reverse)

seq1  --CTCTCCCCCCCCCCATTATTTCTTTTATACAATTCCTAGGATAAGAAG  48
        ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCCCCCCCCATTATTTCTTTTATACAATTCCTAGGATAAGAAG  50

seq1  GTTAAGACGCTGTGATGTGTAGCCTGGCTCGCCTCAGAAATCTGACAATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACGCTGTGATGTGTAGCCTGGCTCGCCTCAGAAATCTGACAATC  100

seq1  TTTTTGGTATATATTCTTGAGAAGTTACGAGCGTTTCCCATTTTATCATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTATATATTCTTGAGAAGTTACGAGCGTTTCCCATTTTATCATG  150

seq1  GCGATTTGCTTTCATTATCCTGATCTTAATGAATTTACCCACCACGGAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTGCTTTCATTATCCTGATCTTAATGAATTTACCCACCACGGAAG  200

seq1  TAGGTCAATTTCTTCTCGTGTGATGTGTGTATAAAGCTTGTTTAGTCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAATTTCTTCTCGTGTGATGTGTGTATAAAGCTTGTTTAGTCCAT  250

seq1  CAGAGGCTTTTGGAGCAGGAGCAAACCATCTCATCTGAGAAAGCATAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTTTTGGAGCAGGAGCAAACCATCTCATCTGAGAAAGCATAAAG  300

seq1  ATAATGTAAAGTGAATGCTAAGCCCGGGTGCGATAGACTTCGCCACTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAAAGTGAATGCTAAGCCCGGGTGCGATAGACTTCGCCACTCAG  350

seq1  CCAGTCCTGCAGCAGAAGCGGGATTATTGCAAACCAACTTAGCCGCCTCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGCAGCAGAAGCGGGATTATTGCAAACCAACTTAGCCGCCTCG  400

seq1  CCAGCTGCTGAATTGGATCCCACTTTAACTCTGCGAGATGACAGGATGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTGAATTGGATCCCACTTTAACTCTGCGAGATGACAGGATGAA  450

seq1  CTTATTTTCTTTCATGTAATGAAACCGGGATCTTTCCTGGTCAGTAAGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTTTCATGTAATGAAACCGGGATCTTTCCTGGTCAGTAAGTG  500

seq1  TATAGAAACATCTGGATTCAGTGACTGCAACAGACCTTAATAGTGTGCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACATCTGGATTCAGTGACTGCAACAGACCTTAATAGTGTGCAA  550

seq1  TTCGCTGGGGAAAAATTGTGTGTATCATATTGTCATTTTGCATCTGTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTGGGGAAAAATTGTGTGTATCATATTGTCATTTTGCATCTGTTCC  600

seq1  TCTGATTAAGATCATTGTAATACATTCAAATTCATTAATTGTGGCTATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAAGATCATTGTAATACATTCAAATTCATTAATTGTGGCTATGT  650

seq1  TGGATCCCTAAATAATTAATGGAATCATAGGTGTCTCCCTCAGCAGCAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCTAAATAATTAATGGAATCATAGGTGTCTCCCTCAGCAGCAAC  700

seq1  CTGATGGCACTGTATATCAGGCAGCCCTGTGAGTTCTGACTAAACAGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCACTGTATATCAGGCAGCCCTGTGAGTTCTGACTAAACAGCTC  750

seq1  TGACACAGTCGCATCTGCTTGCCAGGCACTGCCTCTTATAGCAGCTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGTCGCATCTGCTTGCCAGGCACTGCCTCTTATAGCAGCTTCCC  800

seq1  TTAGCCAGGAAAACAAACAGAAGCATGAGGAGAGGCCAAAGGAAGGGGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGGAAAACAAACAGAAGCATGAGGAGAGGCCAAAGGAAGGGGCA  850

seq1  AACATGTCTGAATTC  863
      |||||||||||||||
seq2  AACATGTCTGAATTC  865


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