BAC Information

Click to search

BAC

Clone NameB6Ng01-344B05
Chromosome3 (Build37)
Map Location 11,711,524 - 11,845,640
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344B05.bB6Ng01-344B05.g
ACCGA126673GA126674
length1,2151,158
definitionB6Ng01-344B05.b B6Ng01-344B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,711,524 - 11,712,761)(11,844,470 - 11,845,640)
sequence
gaattctctaaatatgctgctattgatttaattttcactgaacatgtttg
aaatatctttaattttctgaacattggtgtatttctagtacattatgaaa
actttgggacactatcataaaagcacttcaagtacccagaatcatattca
atctctaaacttttgagattgaatgaaatatgaacattgtggcctctcag
cttcctcttgctgttggattttgcttcttgttctgaggcattgatataag
agcaaactctactgggctttgcaactaaccacattcttccttgatcttga
atcctcctgttctgcctcatgtggtcctcctctgataacatcgcttctac
atctttatcttctttatcagacttgtaagatcccaaatcttgatgaaaaa
ctctcaacagaagaggccatttataagttgtcacatgcaagtgtacattg
tgcagctgtggaatgtaagagtagtcctcaggagcccaaacaaaatacct
ttgagatagcctcttacctgagaaaatatgaaggatgagtcagagtgaag
ccaaattattgagctggtatactaactgtaaagaacatcaaataaggatg
gtgaaatgagagactatgtgaaaaagtcacctaagtgttttagttgtttc
tgtctgtgttttatggcttcaatcttatgtagttgcattatttaaaggtg
taattcataattaatggtgatggagagtggcaaatggtattttcttgttc
tactgaacgttcacatgactgaagtagtttggtttattaggatattgggc
aggcttacataggaaggaggtatatggacaataagaaaaatgaggaaaga
tttttgctatacacagatcttgaaaagaattgttagtatatatgttcctc
agcatgatgtgtttttataatgttctatgtgatttacaggacaaaaaagt
tttcctggacagtctctgtgtatttaagtctcaagctgcttgttcacact
cacgactcacgtgtgcacagagaaatgtatgagcccagtgggagttgcgt
gcttcttcctcaccaaacctcctttctgtatttccgcttactccctgctt
ctacttatttatttgattgattgaacgtcacaaccagcttaaaaaactgt
taatatcagttattccgagcatgctagttagcatcgaaccaactaggtaa
tggtgtgaaaataaa

gaattctcacttctctttattcaaaaaatagtctcacttaaagcagttaa
ctcatcccaaacagaagcatcctaaattctaaagaaaatagacctcaata
tacccacgaagtgtcatttatttattttcatttttattagcttcttaaat
atacgacaatctaattaggcttaccatattttgtccttaattcagtaaat
agaatgaacttgctgtattccattggtttaatatttgctatcttaatgac
ttactacttatgtaagagaataagcaagccagaagtgagaggactaaaaa
ttaattagactcctttcataaagcaacaaagtaattctagtttttttgtc
aatacacagactttgatgatataaaaaatgaatccctctctatctctttt
taaaaggactacgatcccggtttgtttgttttagtcaataggatctcctg
atacttgtgataaattggccaattacactatctaaatctcaagggggaaa
ttaggcaaaacttgtatgttatttgattttcaatctgatttgtattcaga
aacaggcaaatgtctttgtgcaaccaatggactgcatgcagtgtgctttt
aatgaattttagggttgatgaaatgtagtaaaataagccagcaagacagt
gtctcagttatgggattaacttgttcagtttaaacctcaatgaaccccct
aagttattatccacccccaggtaattgtggctcctgactttatataaata
tttatacaagaattagagtgtctccaatttgctttttgctaatgtcataa
aatattctgactaaaacaactaagtgtggaaacaatttacttcagtttac
tagttgcactatataatagagaaaagccaagacaggaaataaagtaaaaa
acaaacacacacacataaaaaacaaagacaaacaaacaaacaaacacacc
aaaaaaaacccaaacaaacaaacaaaaaacccacaagtagaaactgtaga
tcaaagctggaataatcttgctagtaactcagcttgtttttgttttggtt
ttgtggggtgtggtgtttgtttttgttttgtaagaagtggttccgctgtg
ctggctggctaattgtaacaagcaatgtgtgcatggtggcagaaggtgtt
tttcgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11711524_11712761
seq2: B6Ng01-344B05.b_47_1261

seq1  GAATTCTCTAAATATGCTGCTATTGATTTAATTTTCACTGAACATGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAATATGCTGCTATTGATTTAATTTTCACTGAACATGTTTG  50

seq1  AAATATCTTTAATTTTCTGAACATTGGTGTATTTCTAGTACATTATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTAATTTTCTGAACATTGGTGTATTTCTAGTACATTATGAAA  100

seq1  ACTTTGGGACACTATCATAAAAGCACTTCAAGTACCCAGAATCATATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGACACTATCATAAAAGCACTTCAAGTACCCAGAATCATATTCA  150

seq1  ATCTCTAAACTTTTGAGATTGAATGAAATATGAACATTGTGGCCTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAACTTTTGAGATTGAATGAAATATGAACATTGTGGCCTCTCAG  200

seq1  CTTCCTCTTGCTGTTGGATTTTGCTTCTTGTTCTGAGGCATTGATATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTGCTGTTGGATTTTGCTTCTTGTTCTGAGGCATTGATATAAG  250

seq1  AGCAAACTCTACTGGGCTTTGCAACTAACCACATTCTTCCTTGATCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCTACTGGGCTTTGCAACTAACCACATTCTTCCTTGATCTTGA  300

seq1  ATCCTCCTGTTCTGCCTCATGTGGTCCTCCTCTGATAACATCGCTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGTTCTGCCTCATGTGGTCCTCCTCTGATAACATCGCTTCTAC  350

seq1  ATCTTTATCTTCTTTATCAGACTTGTAAGATCCCAAATCTTGATGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCTTCTTTATCAGACTTGTAAGATCCCAAATCTTGATGAAAAA  400

seq1  CTCTCAACAGAAGAGGCCATTTATAAGTTGTCACATGCAAGTGTACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACAGAAGAGGCCATTTATAAGTTGTCACATGCAAGTGTACATTG  450

seq1  TGCAGCTGTGGAATGTAAGAGTAGTCCTCAGGAGCCCAAACAAAATACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGTGGAATGTAAGAGTAGTCCTCAGGAGCCCAAACAAAATACCT  500

seq1  TTGAGATAGCCTCTTACCTGAGAAAATATGAAGGATGAGTCAGAGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGCCTCTTACCTGAGAAAATATGAAGGATGAGTCAGAGTGAAG  550

seq1  CCAAATTATTGAGCTGGTATACTAACTGTAAAGAACATCAAATAAGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTATTGAGCTGGTATACTAACTGTAAAGAACATCAAATAAGGATG  600

seq1  GTGAAATGAGAGACTATGTGAAAAAGTCACCTAAGTGTTTTAGTTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGAGAGACTATGTGAAAAAGTCACCTAAGTGTTTTAGTTGTTTC  650

seq1  TGTCTGTGTTTTATGGCTTCAATCTTATGTAGTTGCATTATTTAAAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTTTTATGGCTTCAATCTTATGTAGTTGCATTATTTAAAGGTG  700

seq1  TAATTCATAATTAATGGTGATGGAGAGTGGCAAATGGTATTTTCTTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATAATTAATGGTGATGGAGAGTGGCAAATGGTATTTTCTTGTTC  750

seq1  TACTGAACGTTCACATGACTGAAGTAGTTTGGTTTATTAGGATATTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACGTTCACATGACTGAAGTAGTTTGGTTTATTAGGATATTGGGC  800

seq1  AGGCTTACATAGGAAGGAGGTATATGGACAATAAGAAAAATGAGGAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACATAGGAAGGAGGTATATGGACAATAAGAAAAATGAGGAAAGA  850

seq1  TTTTTGCTATACACAGATCTTGAAAAGAATTGTTAGTATATATGTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATACACAGATCTTGAAAAGAATTGTTAGTATATATGTTCCTC  900

seq1  AGCATGATGTGTTTTTATAATGTTCTATGTGATTTACAGGACAAAAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATGTGTTTTTATAATGTTCTATGTGATTTACAGGACAAAAAAGT  950

seq1  TTTCCTGGACAGTCTCTGTGTATTTAAGTCTCAAGCTGCTTGTTCACACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGACAGTCTCTGTGTATTTAAGTCTCAAGCTGCTTGTTCACACT  1000

seq1  CACGACTCACGTGTGCACAGGAGAAATGTATGAGGCCCAGGTGGGAGGTG  1050
      ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||
seq2  CACGACTCACGTGTGCACA-GAGAAATGTATGA-GCCCA-GTGGGAGTTG  1047

seq1  CGGTGCTTCTTCCCTCACCCAAACTCCTTTCTGGTATTTCCCGCTTTACT  1100
      | ||||||||| ||||||| || ||||||||| |||||| |||| |||| 
seq2  C-GTGCTTCTT-CCTCACCAAACCTCCTTTCT-GTATTT-CCGC-TTAC-  1091

seq1  TCCCTGC-TCTAC-TATTTATTTGAAATGAAATTGAACGT-ACAACAACA  1147
      ||||||| ||||| |||||||||| | ||  ||||||||| |||||  ||
seq2  TCCCTGCTTCTACTTATTTATTTG-ATTG--ATTGAACGTCACAAC--CA  1136

seq1  GTTTAAAAAAAAAGTGTAAATATCAGTAATTCAGAAGCATTGCTAAGTTA  1197
      | ||   |||||| ||| ||||||||| |||| | |||| |||| |||||
seq2  GCTT---AAAAAACTGTTAATATCAGTTATTCCG-AGCA-TGCT-AGTTA  1180

seq1  GTCATCAGAAACAAAAATAAGTGTTAAT-GTGTGAAAATAAA  1238
      | |||| ||| |||  |     | |||| |||||||||||||
seq2  G-CATC-GAACCAACTA-----GGTAATGGTGTGAAAATAAA  1215


seq1: chr3_11844470_11845640
seq2: B6Ng01-344B05.g_66_1223 (reverse)

seq1  GCACG-AAAACAC--TCTCGCA-CATGCACACATTGCTTGTTTACCAATT  46
      ||||| |||||||  |||  || |||||||||||||||||||   |||||
seq2  GCACGAAAAACACCTTCTGCCACCATGCACACATTGCTTGTT--ACAATT  48

seq1  AAGCCACGCAGGCACAGCGGAAACCACTTCCTACAAAAAACAAAAAACAA  96
       ||||| ||  ||||||||| ||||||||| |||||||    ||||||||
seq2  -AGCCA-GCCAGCACAGCGG-AACCACTTCTTACAAAA---CAAAAACAA  92

seq1  AACACACACACACAAAAACCAAAACAAAAAACAAGCTGAGGTTACTAGCA  146
      |   ||||| |   ||||||||||| ||||||||||||| ||||||||||
seq2  ACACCACACCCCACAAAACCAAAAC-AAAAACAAGCTGA-GTTACTAGCA  140

seq1  AGATTATTCCAGCTTTGATCTACAGTTTCTACTTGTTGGGTTTTTTTGTT  196
      ||||||||||||||||||||||||||||||||||||  || |||||||||
seq2  AGATTATTCCAGCTTTGATCTACAGTTTCTACTTGT--GGGTTTTTTGTT  188

seq1  TGTTTGTTTGGGTTTTTTTTTGGTGTTGTTTGTTTGTTTGTTTGTCTTTT  246
      |||||||||||| |||||||||||| |||||||||||||||||||| |||
seq2  TGTTTGTTTGGG-TTTTTTTTGGTG-TGTTTGTTTGTTTGTTTGTC-TTT  235

seq1  GTTTTTTATTGTGTGTGTGTTTGTTTTTTTACTTTATTTCCTGTCTTGGC  296
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTTTTA-TGTGTGTGTGTTTG-TTTTTTACTTTATTTCCTGTCTTGGC  283

seq1  TTTTCTCTATTATATAGTGCAACTAGTAAACTGAAGTAAATTGTTTCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTATTATATAGTGCAACTAGTAAACTGAAGTAAATTGTTTCCAC  333

seq1  ACTTAGTTGTTTTAGTCAGAATATTTTATGACATTAGCAAAAAGCAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTGTTTTAGTCAGAATATTTTATGACATTAGCAAAAAGCAAATT  383

seq1  GGAGACACTCTAATTCTTGTATAAATATTTATATAAAGTCAGGAGCCACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTCTAATTCTTGTATAAATATTTATATAAAGTCAGGAGCCACA  433

seq1  ATTACCTGGGGGTGGATAATAACTTAGGGGGTTCATTGAGGTTTAAACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGGGGGTGGATAATAACTTAGGGGGTTCATTGAGGTTTAAACTG  483

seq1  AACAAGTTAATCCCATAACTGAGACACTGTCTTGCTGGCTTATTTTACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTAATCCCATAACTGAGACACTGTCTTGCTGGCTTATTTTACTA  533

seq1  CATTTCATCAACCCTAAAATTCATTAAAAGCACACTGCATGCAGTCCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATCAACCCTAAAATTCATTAAAAGCACACTGCATGCAGTCCATT  583

seq1  GGTTGCACAAAGACATTTGCCTGTTTCTGAATACAAATCAGATTGAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACAAAGACATTTGCCTGTTTCTGAATACAAATCAGATTGAAAAT  633

seq1  CAAATAACATACAAGTTTTGCCTAATTTCCCCCTTGAGATTTAGATAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACATACAAGTTTTGCCTAATTTCCCCCTTGAGATTTAGATAGTG  683

seq1  TAATTGGCCAATTTATCACAAGTATCAGGAGATCCTATTGACTAAAACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCCAATTTATCACAAGTATCAGGAGATCCTATTGACTAAAACAA  733

seq1  ACAAACCGGGATCGTAGTCCTTTTAAAAAGAGATAGAGAGGGATTCATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCGGGATCGTAGTCCTTTTAAAAAGAGATAGAGAGGGATTCATTT  783

seq1  TTTATATCATCAAAGTCTGTGTATTGACAAAAAAACTAGAATTACTTTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCATCAAAGTCTGTGTATTGACAAAAAAACTAGAATTACTTTGT  833

seq1  TGCTTTATGAAAGGAGTCTAATTAATTTTTAGTCCTCTCACTTCTGGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGAAAGGAGTCTAATTAATTTTTAGTCCTCTCACTTCTGGCTT  883

seq1  GCTTATTCTCTTACATAAGTAGTAAGTCATTAAGATAGCAAATATTAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCTCTTACATAAGTAGTAAGTCATTAAGATAGCAAATATTAAAC  933

seq1  CAATGGAATACAGCAAGTTCATTCTATTTACTGAATTAAGGACAAAATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAATACAGCAAGTTCATTCTATTTACTGAATTAAGGACAAAATAT  983

seq1  GGTAAGCCTAATTAGATTGTCGTATATTTAAGAAGCTAATAAAAATGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCCTAATTAGATTGTCGTATATTTAAGAAGCTAATAAAAATGAAA  1033

seq1  ATAAATAAATGACACTTCGTGGGTATATTGAGGTCTATTTTCTTTAGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATGACACTTCGTGGGTATATTGAGGTCTATTTTCTTTAGAAT  1083

seq1  TTAGGATGCTTCTGTTTGGGATGAGTTAACTGCTTTAAGTGAGACTATTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGCTTCTGTTTGGGATGAGTTAACTGCTTTAAGTGAGACTATTT  1133

seq1  TTTGAATAAAGAGAAGTGAGAATTC  1171
      |||||||||||||||||||||||||
seq2  TTTGAATAAAGAGAAGTGAGAATTC  1158


| Home | SequenceCutter | Blast | Download |