BAC Information

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BAC

Clone NameB6Ng01-346B05
Chromosome17 (Build37)3 (Build37)
Map Location 88,881,476 - 88,882,36110,645,007 - 10,645,846
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2
Downstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346B05.bB6Ng01-346B05.g
ACCGA128081GA128082
length8861,021
definitionB6Ng01-346B05.b B6Ng01-346B05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,881,476 - 88,882,361)(10,645,007 - 10,645,846)
sequence
gaattcaatacaaaaaccacatagttattacttacttaaaattgacatag
caaacgaacttgctaatatttattcatttatttcctttttttttgggttt
ttgagacagggcttctctgtgtagccctggctgtcctggaactcactcta
tagaccagggtgggctcgaactcagagatccgcctgcctctgcctcccaa
gtgctgggattaaaggcctgtggcaccgcatcccggctctgaacttgcta
atttgttaaaagacatggaactaccacatgcctgccgatttctaaactca
ctgtcaatggacttttcaggaaagacttctctttccactataaaactcac
gcctacacattggtgcaaaaaatttcacacacaatgagccttacttactt
cataacggttcattatagtgactgcatgaaaattttcaatatctcatttt
ccttgaatgagtattaaggctacaattagatttctttttcactcaaaaaa
aaaaaaaaaaaaaaaaaagctgccaaacccatatagtcaaagtacaaaaa
aagttcttactgacaatttgtatacagaactattttattttatgtatatg
ggtgtcttccctgcatgcatgtctgtgaacatctgtgtctctgatgcttg
ttgcaaagcccagacaaggtcatcagatctcctggtttttgtttgggggt
aatttttgagacagaatatctcattgctctataacttgtgaaataggaaa
gcccaatcggtcagcgctgcagtggtaccctgtctcctcactctctcgaa
cttgaatttacgcacctgactttttctcatgggttctagtgcccccgcta
gaggctttgtaaggaaccatctcactgactgtgcgc
gaattccatggtggaaggagaggactgacctccacaggtggtgtggtgtg
caccctcacctacaaaagatgttaaaaagaaaagtaaaccgcttgagagc
tgcgggcatcactcactgggtgggagagtggtttgagccccagcagcaag
cagaagtagatggaggtgtgggggtgtgtgaggctttactttgtagtgga
ctcaaacagttgcttcaagtaaacatttttgttaaaaatgacaataaaat
cctttatatttgatcaccttcataatatatgaaatagtgctgaagtaaaa
aattatgagtcagtttttaatgtgctaattgggaaagaatagttagaaaa
gaaatacttgatttactctatgtgacactgttctgcatacctatataaac
tatgtcatgatacatgatactattgtctggaaagacccagaaaagagtct
cggttacaaagatgatcaccagaaaatgatgacagcaactactcagagtg
gccaggatctcaagcatattcaacttgttcttacatatacatgcttttta
attcataggaagactaaagcaatcattttataattttataatttcttatt
tgtaaatgaggaaactcagaatcaggcaggctctgaagctccatttccta
caggtagcttgcatagtgtctacttacatctaaatttcttggactttgat
gtttactttcttaacacatattggcaactattgcttaaaacaatgctgca
tagtaaactgaagaagaaatcagagaattttgatgacaaattttggttct
tttccttactactaaacctgtgattctgctgaggtagttctgcattagcc
tgtaggtcagcttgaagcggggtttgaattaagccagggctgggtttgag
tttgacgggacatgcttttgggtgtataggatgctttttgccttggtcac
ggaaatgcccagtgaaaacgtgttttggaaagtgttattccacgtgacag
ctactatattctaatggcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88881476_88882361
seq2: B6Ng01-346B05.b_43_928 (reverse)

seq1  GCGCACAGTCAGTAAGATGCTTCCTTACAAAGCCCTGAGCAGGAGCCCTA  50
      ||||||||||||| ||||| ||||||||||||||   ||| || || |||
seq2  GCGCACAGTCAGTGAGATGGTTCCTTACAAAGCCTCTAGCGGGGGCACTA  50

seq1  GAACCCATACGAAAAAGCCAGGTGCCTATAATTCCAGTTCTAGGGAG-GA  99
      ||||||||  ||||||| ||||||| || ||||| ||||| || ||| ||
seq2  GAACCCATGAGAAAAAGTCAGGTGCGTA-AATTCAAGTTCGAGAGAGTGA  99

seq1  GGAGACAGGGTACC-CTGGGCTG-GCTTGCCGATTGGGCTTGCCTACTTC  147
      |||||||||||||| ||  || | |||  |||||||||||| |||| |||
seq2  GGAGACAGGGTACCACT--GCAGCGCTGACCGATTGGGCTTTCCTATTTC  147

seq1  ACAAGTTCTAGACCAATGAGATATTCTGTCTCAAAAATTACCCCCAAACA  197
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTATAGAGCAATGAGATATTCTGTCTCAAAAATTACCCCCAAACA  197

seq1  AAAACCAGGAGATCTGATGGCCTTGTCTGGGCTCTGCAACAAGCATCAGA  247
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AAAACCAGGAGATCTGATGACCTTGTCTGGGCTTTGCAACAAGCATCAGA  247

seq1  GACACAGATGTACACAGACATGCATGCAGGGAAGACACCCATATACATAA  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACACAGATGTTCACAGACATGCATGCAGGGAAGACACCCATATACATAA  297

seq1  AATAAAATACTTCTGTATACAAATTGTCAGTAAGAACTTCTTTTGTACTT  347
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AATAAAATAGTTCTGTATACAAATTGTCAGTAAGAACTTTTTTTGTACTT  347

seq1  TGACTATATGGGTTTGGCAGCTTTTTTTTTTTTTTTTTTTTTTTTGAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATGGGTTTGGCAGCTTTTTTTTTTTTTTTTTTTTTTTTGAGTG  397

seq1  AAAAAGAAATCTAATTGTAGCCTTAATACTCATTCAAGGAAAATGAGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATCTAATTGTAGCCTTAATACTCATTCAAGGAAAATGAGATA  447

seq1  TTGAAAATTTTCATGCAGTCACTATAATGAACCGTTATGAAGTAAGTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTTCATGCAGTCACTATAATGAACCGTTATGAAGTAAGTAAG  497

seq1  GCTCATTGTGTCTGAAATTTTTTGCACCAATGTGTAGGCGTGAGTTTTAT  547
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTGTGTGAAATTTTTTGCACCAATGTGTAGGCGTGAGTTTTAT  547

seq1  AGTGGAAAGAGAAGTCTTTCCTGAAAAGTCCATTGACAGTGAGTTTAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGAGAAGTCTTTCCTGAAAAGTCCATTGACAGTGAGTTTAGAA  597

seq1  ATTGGCAGGCATGTGGTAGTTCCATGTCTTTTAACAAATTAGCAAGTTCA  647
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCAGGCATGTGGTAGTTCCATGTCTTTTAACAAATTAGCAAGTTCA  647

seq1  GAGCCGGGCTGCGGTGCCACAGGCCTTTAATCCCAGCACTCGGGAGGCAG  697
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GAGCCGGGATGCGGTGCCACAGGCCTTTAATCCCAGCACTTGGGAGGCAG  697

seq1  AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTATAGAGTGAGTT  747
      |||||||||||| |||||||||||| ||| ||||||||||||||||||||
seq2  AGGCAGGCGGATCTCTGAGTTCGAGCCCACCCTGGTCTATAGAGTGAGTT  747

seq1  CCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCAAAAAGCCAAAAA  797
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCAAAAACCCAAAAA  797

seq1  AAAAGGAAATAAATGAATAAATATTAGCAAGTTCGTTTGCTATGTCAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAATAAATGAATAAATATTAGCAAGTTCGTTTGCTATGTCAATT  847

seq1  TTAAGTAAGTAATAACTATGTGGTTTTTGTATTGAATTC  886
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAGTAATAACTATGTGGTTTTTGTATTGAATTC  886

seq1: chr3_10645007_10645846
seq2: B6Ng01-346B05.g_248_1087

seq1  GGCTTTACTTTGTAGTGGACTCAAACAGTTGCTTCAAGTAAACATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACTTTGTAGTGGACTCAAACAGTTGCTTCAAGTAAACATTTTTG  50

seq1  TTAAAAATGACAATAAAATCCTTTATATTTGATCACCTTCATAATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGACAATAAAATCCTTTATATTTGATCACCTTCATAATATATG  100

seq1  AAATAGTGCTGAAGTAAAAAATTATGAGTCAGTTTTTAATGTGCTAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGCTGAAGTAAAAAATTATGAGTCAGTTTTTAATGTGCTAATTG  150

seq1  GGAAAGAATAGTTAGAAAAGAAATACTTGATTTACTCTATGTGACACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATAGTTAGAAAAGAAATACTTGATTTACTCTATGTGACACTGT  200

seq1  TCTGCATACCTATATAAACTATGTCATGATACATGATACTATTGTCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATACCTATATAAACTATGTCATGATACATGATACTATTGTCTGGA  250

seq1  AAGACCCAGAAAAGAGTCTCGGTTACAAAGATGATCACCAGAAAATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGAAAAGAGTCTCGGTTACAAAGATGATCACCAGAAAATGATG  300

seq1  ACAGCAACTACTCAGAGTGGCCAGGATCTCAAGCATATTCAACTTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTACTCAGAGTGGCCAGGATCTCAAGCATATTCAACTTGTTCT  350

seq1  TACATATACATGCTTTTTAATTCATAGGAAGACTAAAGCAATCATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATACATGCTTTTTAATTCATAGGAAGACTAAAGCAATCATTTTAT  400

seq1  AATTTTATAATTTCTTATTTGTAAATGAGGAAACTCAGAATCAGGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATAATTTCTTATTTGTAAATGAGGAAACTCAGAATCAGGCAGGC  450

seq1  TCTGAAGCTCCATTTCCTACAGGTAGCTTGCATAGTGTCTACTTACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCTCCATTTCCTACAGGTAGCTTGCATAGTGTCTACTTACATCT  500

seq1  AAATTTCTTGGACTTTGATGTTTACTTTCTTAACACATATTGGCAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTGGACTTTGATGTTTACTTTCTTAACACATATTGGCAACTAT  550

seq1  TGCTT-AAACAATGCTGCATAGTAAACTGAAGAAGAAATCAGAGAATTTT  599
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAACAATGCTGCATAGTAAACTGAAGAAGAAATCAGAGAATTTT  600

seq1  GATGACAAA-TTTGGTTC-TTTCCTTACTACTAAACCTGTGATTCTGCTG  647
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GATGACAAATTTTGGTTCTTTTCCTTACTACTAAACCTGTGATTCTGCTG  650

seq1  AGGTAGTTCTGCATTAGCCTGTAGGTCAGCTTGAAAGCGGGGTTTGAATT  697
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTAGTTCTGCATTAGCCTGTAGGTCAGCTTG-AAGCGGGGTTTGAATT  699

seq1  AAGCCAGGGCTGGGTTTGAGTTTGACGGGACATTGCTTTTGGGTGTATAG  747
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGCCAGGGCTGGGTTTGAGTTTGACGGGACA-TGCTTTTGGGTGTATAG  748

seq1  GATGC-TTTTGCCTTGGTCACCGGAAATGCCCAGTGAAAACGTGTTTTGG  796
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  GATGCTTTTTGCCTTGGTCA-CGGAAATGCCCAGTGAAAACGTGTTTTGG  797

seq1  AAAGTGTTTATCCACGTGACAGCTACATATATTCTAATGCCAGC  840
      ||||||||  |||||||||||||||| |||||||||||| ||||
seq2  AAAGTGTTATTCCACGTGACAGCTAC-TATATTCTAATGGCAGC  840