BAC Information

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BAC

Clone NameB6Ng01-346O18
Chromosome3 (Build37)
Map Location 65,790,779 - 65,926,323
singlet/doubletdoublet
Overlap geneLOC625048, Veph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1
Downstream geneTpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346O18.bB6Ng01-346O18.g
ACCGA128684GA128685
length1,179364
definitionB6Ng01-346O18.b B6Ng01-346O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,790,779 - 65,791,936)(65,925,954 - 65,926,323)
sequence
gaattcagtttccagaacccatggtggatggcttatggtcacctacaact
tcagccccaggagacccaatgccttcttctcatgtctgaggtgtgtgtgt
ccgagctcaagtactaataatacctacaactgctacacacaagcccatgg
tctataaggtattttttttcttctgaaggttttggtctgtgttattaata
ttaacaggttcttcacttcaatggctagttaagctaaacatttctgaggt
ggtctatcactgattaacactgtggtcaatattgggggcagtgttaatgt
agcctcctgagcattctgggaaatattgatgaccccagcagccctcccat
ccatgctttgatggcaggcacgatagtagtctgtcttataaactataaaa
tgacccaagggaggacagttgctcaacatacatgggcttgcttgggaagc
tgccagaggtaccagcttttaggaatgcagagctatcttctagtatctca
ccagaatgatactgaactcttcctttagctcaaacaaacttgcaagcagt
gtgagttgtaagtttacctagtgtgtgggcattgctagtcttgacatcaa
gataatcacctgagcagtgaaaccagctgcctccattggtgagtcacgaa
tactgatacggagacaggagggaaggtggggacaatatggagacgtggga
aggagccttcttctcagaggcttctcacaagctgagaatcaagaatcccg
acagaattaacaacgcttgctacagcctttctcctttcccagctggaagt
ggtcaacgttcttggaacctcatcagattatttatagtacatattctttt
actttatgaaaccccagtgactcctgattttctgttatcaaattataata
ttcctatctaagtcactaccagagctaaccctatattatcattttattct
gaaagacaaaacaaggaaaattcaagttttcctagcaccccttgaaagct
accactattgtatgagaaggctaagaatacttaaactgtgaccgttcctt
gcctaaccaagactcattacctgggtatataccttttagttcttcctcag
ccttccttctcttttaataccttagagcacaggggatgggcagaattctt
gttaattggagcccaaccttttgtgcata

tatctaaatgtaatctctcactgacaatgaaaagaagttaaagctgtaag
aatagtcacacatttcacattttaggatgaagaatgctgtctcatactca
ctcagaatgttcacattacataactagagaataaactctttgtttgagct
ctatttttcataattcactctgtatataaatagaatcttttgaaccctga
tcttcattgtatgccttcattctcagatccttgaaaaagtaaatatgaat
atctatatttacccctttccaactaagtaatgttattgggaactttatat
gccccagtacatgggaacgccagggccaaaaagtgggagagggtgagtag
gggagtggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65790779_65791936
seq2: B6Ng01-346O18.b_48_1226

seq1  GAATTCAGTTTCCAGAACCCATGGTGGATGGCTTATGGTCACCTACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCCAGAACCCATGGTGGATGGCTTATGGTCACCTACAACT  50

seq1  TCAGCCCCAGGAGACCCAATGCCTTCTTCTCATGTCTGAGGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCAGGAGACCCAATGCCTTCTTCTCATGTCTGAGGTGTGTGTGT  100

seq1  CCGAGCTCAAGTACTAATAATACCTACAACTGCTACACACAAGCCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTCAAGTACTAATAATACCTACAACTGCTACACACAAGCCCATGG  150

seq1  TCTATAAGGTATTTTTTTTCTTCTGAAGGTTTTGGTCTGTGTTATTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGGTATTTTTTTTCTTCTGAAGGTTTTGGTCTGTGTTATTAATA  200

seq1  TTAACAGGTTCTTCACTTCAATGGCTAGTTAAGCTAAACATTTCTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGTTCTTCACTTCAATGGCTAGTTAAGCTAAACATTTCTGAGGT  250

seq1  GGTCTATCACTGATTAACACTGTGGTCAATATTGGGGGCAGTGTTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATCACTGATTAACACTGTGGTCAATATTGGGGGCAGTGTTAATGT  300

seq1  AGCCTCCTGAGCATTCTGGGAAATATTGATGACCCCAGCAGCCCTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGAGCATTCTGGGAAATATTGATGACCCCAGCAGCCCTCCCAT  350

seq1  CCATGCTTTGATGGCAGGCACGATAGTAGTCTGTCTTATAAACTATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTTGATGGCAGGCACGATAGTAGTCTGTCTTATAAACTATAAAA  400

seq1  TGACCCAAGGGAGGACAGTTGCTCAACATACATGGGCTTGCTTGGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAAGGGAGGACAGTTGCTCAACATACATGGGCTTGCTTGGGAAGC  450

seq1  TGCCAGAGGTACCAGCTTTTAGGAATGCAGAGCTATCTTCTAGTATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGGTACCAGCTTTTAGGAATGCAGAGCTATCTTCTAGTATCTCA  500

seq1  CCAGAATGATACTGAACTCTTCCTTTAGCTCAAACAAACTTGCAAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGATACTGAACTCTTCCTTTAGCTCAAACAAACTTGCAAGCAGT  550

seq1  GTGAGTTGTAAGTTTACCTAGTGTGTGGGCATTGCTAGTCTTGACATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTGTAAGTTTACCTAGTGTGTGGGCATTGCTAGTCTTGACATCAA  600

seq1  GATAATCACCTGAGCAGTGAAACCAGCTGCCTCCATTGGTGAGTCACGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCACCTGAGCAGTGAAACCAGCTGCCTCCATTGGTGAGTCACGAA  650

seq1  TACTGATACGGAGACAGGAGGGAAGGTGGGGACAATATGGAGACGTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATACGGAGACAGGAGGGAAGGTGGGGACAATATGGAGACGTGGGA  700

seq1  AGGAGCCTTCTTCTCAGAGGCTTCTCACAAGCTGAGAATCAAGAATCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTTCTTCTCAGAGGCTTCTCACAAGCTGAGAATCAAGAATCCCG  750

seq1  ACAGAATTAACAACGCTTGCTACAGCCTTTCTCCTTTCCCAGCTGGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAACAACGCTTGCTACAGCCTTTCTCCTTTCCCAGCTGGAAGT  800

seq1  GGTCAACGTTCTTGGAACCTCATCAGATTATTTATAGTACATATTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACGTTCTTGGAACCTCATCAGATTATTTATAGTACATATTCTTTT  850

seq1  ACTTTATGAAACCCCAGTGACTCCTGATTTTCTGTTATCAAATTATAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGAAACCCCAGTGACTCCTGATTTTCTGTTATCAAATTATAATA  900

seq1  ATCCTATCTAAGTCACTACCAGAGCT-ACCCTATAATATCATTT--ATCT  947
       ||||||||||||||||||||||||| |||||||| ||||||||   |||
seq2  TTCCTATCTAAGTCACTACCAGAGCTAACCCTATATTATCATTTTATTCT  950

seq1  GAAAGACAAAACAAGGAAAA-TCAAG-TTTCCTAGCAACCCTTTGAAAGC  995
      |||||||||||||||||||| ||||| ||||||||| |||| ||||||||
seq2  GAAAGACAAAACAAGGAAAATTCAAGTTTTCCTAGC-ACCCCTTGAAAGC  999

seq1  TACCACTA-TGTATGAG-AGGCTAAG-ATACTT-AACTGTGACCG-TCCT  1040
      |||||||| |||||||| |||||||| |||||| ||||||||||| ||||
seq2  TACCACTATTGTATGAGAAGGCTAAGAATACTTAAACTGTGACCGTTCCT  1049

seq1  TG-CTAACC-AGACCCA-TACTTGGGTATATACC--TTAGTCTTCCCCCA  1085
      || |||||| |||| || ||| ||||||||||||  |||||  | || ||
seq2  TGCCTAACCAAGACTCATTACCTGGGTATATACCTTTTAGTTCTTCCTCA  1099

seq1  AGCTTCTCTC-CTTTTAATACCTAGGAG-GCA-GGGATGGGCAGA--TC-  1129
        ||||  || ||||||||||||  |||  || ||||||||||||  || 
seq2  GCCTTCCTTCTCTTTTAATACCTTAGAGCACAGGGGATGGGCAGAATTCT  1149

seq1  TGTAAATTGGAG-CCAACCTTTTGTGCATA  1158
      ||| |||||||| |||||||||||||||||
seq2  TGTTAATTGGAGCCCAACCTTTTGTGCATA  1179


seq1: chr3_65925954_65926323
seq2: B6Ng01-346O18.g_71_440 (reverse)

seq1  TCCCCCCCACTCCCCTACTCACCCTCTCCCACTTTTTGGCCCTGGCGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCACTCCCCTACTCACCCTCTCCCACTTTTTGGCCCTGGCGTTC  50

seq1  CCATGTACTGGGGCATATAAAGTTCCCAATAACATTACTTAGTTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACTGGGGCATATAAAGTTCCCAATAACATTACTTAGTTGGAAAG  100

seq1  GGGTAAATATAGATATTCATATTTACTTTTTCAAGGATCTGAGAATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATATAGATATTCATATTTACTTTTTCAAGGATCTGAGAATGAAG  150

seq1  GCATACAATGAAGATCAGGGTTCAAAAGATTCTATTTATATACAGAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAATGAAGATCAGGGTTCAAAAGATTCTATTTATATACAGAGTGA  200

seq1  ATTATGAAAAATAGAGCTCAAACAAAGAGTTTATTCTCTAGTTATGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAAAATAGAGCTCAAACAAAGAGTTTATTCTCTAGTTATGTAAT  250

seq1  GTGAACATTCTGAGTGAGTATGAGACAGCATTCTTCATCCTAAAATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATTCTGAGTGAGTATGAGACAGCATTCTTCATCCTAAAATGTGA  300

seq1  AATGTGTGACTATTCTTACAGCTTTAACTTCTTTTCATTGTCAGTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGACTATTCTTACAGCTTTAACTTCTTTTCATTGTCAGTGAGAG  350

seq1  ATTACATTTAGATAGAATTC  370
      ||||||||||||||||||||
seq2  ATTACATTTAGATAGAATTC  370


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