BAC Information

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BAC

Clone NameB6Ng01-347B18
Chromosome3 (Build37)
Map Location 80,612,890 - 80,614,078
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem144, 1110032E23Rik, EG626797, Gria2
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B18.bB6Ng01-347B18.g
ACCGA128813GA128814
length8781,176
definitionB6Ng01-347B18.b B6Ng01-347B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatctcaaatggccaagaatcatttacagaaatg
ttcaacatctttagccatcagggaaatacaaatcaaaactactctgagac
ttcattgtatacctgtgaaaatggctaaaatcaaaaccacaagtgaaacc
tcattttgtgaagactatggagcaaggggaacaccccttcattgctatca
ggagtacaaacttgtacaaatacttggaaatcagtatgatgactttgcag
aaaattgggaatagctctacctcaagattcagctgtagaactcctatgaa
tatatccaaaaaatattctaccataccacaatattttctcaactatgtac
atagaagctttatgcataatagcaagagactgggaacaaccaagatgtcc
ctttactgaagagtggataaagaaaatatggtacatttacaccatggaat
attactccactgttaaaatcaacgggtggagtggaaaatatcatcctgag
taaggtaactcagaccagaaagacaaggatggtgtgtactcacttagaag
tggatattagctgtaaagtaaaggataaccatgctgcagtccacagactc
agagaagctgagtaacaaagggagttcaggtgtgaatctctctgcaaaag
ggaaatagactagatgtttcagttggacaggggtctggagaggtgggatg
gagaagaggggaggatggagggcccaaagtactaggagagacaactggaa
tcaggagggtatattctaggacaagctagaaaatccagtacaattgaaaa
actccctggaatctatgagtgagctaagactctaagcagtggggggatgt
atagcctgaactggaaatctcttgaaac

tgaatatttgaaagagctagtaacactctgtgtttataatagttacagtg
aaaataggctagttatagagatagtaaaacaaaacaagtttcagatgaag
atataaaaatgacacaaacacacaatgaaatagtatgctgccattaagag
gaagaaggaaaaataaaaaaaaataaaaaaataaaaagctgactcttgag
gacatatgtcaagtgagattacttgtaccaacaggacaaatactgcattc
ctccactaatctgatgttctcaaataagcaagcatgcagatgcacagact
aaaatggtgtaccacagaagctcaggaatatggaaaactgagattatgct
gaaaaattgtgtagtttcaattgtgcaaggcaagtcagttctagagatag
gctgtgacattttatgccttgagttaatgacacttggttgtgtaacatgc
aaaattttaaaaggtgtatctcttttgtttctattttaaactatttttaa
agctgattccttcaaagatacacagtgatttattcagcacctgaactcaa
caggcttcttataagcaagctccctttgttctggaccacttgagcttttg
gttttctttgctgtatttctacagcttctcttgctattttcttctgtttg
gttttgtttgattttatgctggcttgctggtttttgaatgtcctggcttc
caagtgattccctctgattttgcactttatagcctccactactctaccct
caatcagagtgcagtcacacagctgccagaggcactgctgacttgattca
agaggagcttgagatgcccaacttggaaaagggcagtcaccttccacagc
atctagaatgcagccaaggatggagacatgctttccttagtcagtgcact
gtgctgaaatgttagaaacaaggagcagactttttcaagcagactgtctc
gcataaccttgagtgctctatttcccttattctaaaactgtcatgtagat
ttatcagagacagatatgtggggtatgaatccaaatcaactttcttctgc
cgtcagtagcattgtttagagtgttgtctggaatgatataagcaatttca
atttcagcttgctgtttgcatagaattgaatggttctgtgacgagaagga
cattgcacagcaagagggtaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80612890_80614078
seq2: B6Ng01-347B18.g_78_1253

seq1  TGAATATTTGAAAGAGCTAGTAACACTCTGTGTTTATAATAGTTACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTGAAAGAGCTAGTAACACTCTGTGTTTATAATAGTTACAGTG  50

seq1  AAAATAGGCTAGTTATAGAGATAGTAAAACAAAACAAGTTTCAGATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGCTAGTTATAGAGATAGTAAAACAAAACAAGTTTCAGATGAAG  100

seq1  ATATAAAAATGACACAAACACACAATGAAATAGTATGCTGCCATTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATGACACAAACACACAATGAAATAGTATGCTGCCATTAAGAG  150

seq1  GAAGAAGGAAAAATAAAAAAAAATAAAAAAATAAAAAGCTGACTCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAAAATAAAAAAAAATAAAAAAATAAAAAGCTGACTCTTGAG  200

seq1  GACATATGTCAAGTGAGATTACTTGTACCAACAGGACAAATACTGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGTCAAGTGAGATTACTTGTACCAACAGGACAAATACTGCATTC  250

seq1  CTCCACTAATCTGATGTTCTCAAATAAGCAAGCATGCAGATGCACAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAATCTGATGTTCTCAAATAAGCAAGCATGCAGATGCACAGACT  300

seq1  AAAATGGTGTACCACAGAAGCTCAGGAATATGGAAAACTGAGATTATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTGTACCACAGAAGCTCAGGAATATGGAAAACTGAGATTATGCT  350

seq1  GAAAAATTGTGTAGTTTCAATTGTGCAAGGCAAGTCAGTTCTAGAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGTGTAGTTTCAATTGTGCAAGGCAAGTCAGTTCTAGAGATAG  400

seq1  GCTGTGACATTTTATGCCTTGAGTTAATGACACTTGGTTGTGTAACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACATTTTATGCCTTGAGTTAATGACACTTGGTTGTGTAACATGC  450

seq1  AAAATTTTAAAAGGTGTATCTCTTTTGTTTCTATTTTAAACTATTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAAGGTGTATCTCTTTTGTTTCTATTTTAAACTATTTTTAA  500

seq1  AGCTGATTCCTTCAAAGATACACAGTGATTTATTCAGCACCTGAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTCCTTCAAAGATACACAGTGATTTATTCAGCACCTGAACTCAA  550

seq1  CAGGCTTCTTATAAGCAAGCTCCCTTTGTTCTGGACCACTTGAGCTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTTATAAGCAAGCTCCCTTTGTTCTGGACCACTTGAGCTTTTG  600

seq1  GTTTTCTTTGCTGTATTTCTACAGCTTCTCTTGCTATTTTCTTCTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTGCTGTATTTCTACAGCTTCTCTTGCTATTTTCTTCTGTTTG  650

seq1  GTTTTGTTTGATTTTATGCTGGCTTGCTGGTTTTTGAATGTCCTGGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTGATTTTATGCTGGCTTGCTGGTTTTTGAATGTCCTGGCTTC  700

seq1  CAAGTGATTCCCTCTGATTTTGCACTTTATAGCCTCCACTACTCTACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATTCCCTCTGATTTTGCACTTTATAGCCTCCACTACTCTACCCT  750

seq1  CAATCAGAGTGCAGTCACACAGCTGCCAGAGGCACTGCTGACTTGATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAGTGCAGTCACACAGCTGCCAGAGGCACTGCTGACTTGATTCA  800

seq1  AGAGGAGCTTGAGATGCCCAACTTGGAAAAGGGCAGTCACCTTCCACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTTGAGATGCCCAACTTGGAAAAGGGCAGTCACCTTCCACAGC  850

seq1  ATCTAGAATGCAGCCAAGGATGGAGACATGCTTTCCTTAGTCAGTGCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATGCAGCCAAGGATGGAGACATGCTTTCCTTAGTCAGTGCACT  900

seq1  GTGCTGAAATGTTAGAAACAAGGAGCAGAACTTTTTCAAGCAGACTGTCT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGCTGAAATGTTAGAAACAAGGAGCAG-ACTTTTTCAAGCAGACTGTCT  949

seq1  CGCATAACCTTGAGTGGCTCTATTTCCCTTATTCTAAAACTGTCATGTTA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CGCATAACCTTGAGT-GCTCTATTTCCCTTATTCTAAAACTGTCATG-TA  997

seq1  GATTTATCAGAGACAGATTATGT-GGGTATGAATCCAAAATTCAACTTTC  1049
      ||||||||||||||||| ||||| |||||||||||||||  |||||||||
seq2  GATTTATCAGAGACAGA-TATGTGGGGTATGAATCCAAA--TCAACTTTC  1044

seq1  TTCCTGCCGTCAGTAGCCATTGTTTCAGAGTGTTGTCTGGTATGATATAA  1099
      || ||||||||||||| |||||||| |||||||||||||| |||||||||
seq2  TT-CTGCCGTCAGTAG-CATTGTTT-AGAGTGTTGTCTGGAATGATATAA  1091

seq1  GCAAAATTTCATTTTCAGGCCTGCTG-TTGCATAGAATTGATTGTTTCCT  1148
      ||  ||||||| ||||| || ||||| |||||||||||||| || || ||
seq2  GC--AATTTCAATTTCA-GCTTGCTGTTTGCATAGAATTGAATGGTT-CT  1137

seq1  GTGACAGAGAAAGACATGGCAACAGCAAGAGGGTATTTTTT  1189
      ||||| ||||| ||||| || |||||||||||||| |||||
seq2  GTGAC-GAGAAGGACATTGC-ACAGCAAGAGGGTAATTTTT  1176


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