BAC Information

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BAC

Clone NameB6Ng01-350E18
Chromosome3 (Build37)
Map Location 80,576,620 - 80,681,714
singlet/doubletdoublet
Overlap geneGria2, Glrb
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneEG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350E18.bB6Ng01-350E18.g
ACCGA131014GA131015
length1,1551,029
definitionB6Ng01-350E18.b B6Ng01-350E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,576,620 - 80,577,806)(80,680,712 - 80,681,714)
sequence
gaattcttttaaatggattaaataaaaaattcaagagttgagaccatttt
aatttcaaagtctgatgatttcaaaggaattcgggaacttgttattcgga
tatgtaataaagaattcaaagcatttttttaaggttatggaagtccaatt
ccaagacagatcttgctcttatgagtgacattagagaataagattccaag
gctagaagcactctgccagcaggttcttgattcaaaagtgctaaagaata
aaaaccacctggacaacttacattttcattctacaggcacccttgtattt
cggtattcagaaaatgtgattagtgatattttaaataatgtaaatagtag
caggatataagaggtcattaaaatacagtaaaaaatacagtacccctgct
gttcacaacattctctaatatcaaaaaaattatttagtgctgtgctaatt
tcctcttcactcagtgaattatgcatcaattcagtgaatttgttaaccta
catctaacttttaaaaataatgcaaggccacagttcttaatagtctttgt
atttctattccttcatcaatatctatccatttgcaaggatttagatatgt
ctcttgtctgtttttaacacatatcactactaaaatagctgactatattt
cactttcgcatagctgtgagttaagttcgtaagtgggagtgcataactca
tcaaagtgctgagattaaggagttggatgctcagccatagatgcaacatc
tctactgactcaccagcactaagactcagcaaacactgcagaagaggaag
tagggagaaagagatacgggatggggaagagtgctgtcaattactgccct
atggctatggcatgttaaaatcatgagctcataactgctgtggttacctg
cataagacctatacaaaaatcaactcaccgaaatctcagtgtatatgggg
tgaattatctctagtcctgactctttgctgatgagattggggaaagatat
ggggagggaagggaaaatcatctgtttgagatgtggcactgtagtctgct
cgcatgatactctataccgtgcacataatagtagtctactagactagtag
ctataaaaagttccgaactgaatgagaatgttgtagaacctggtgagtca
aggga
gaattcaccctgaaaaactgtttgtattccatctgggagaaggacttagg
tttttaagctaattcactctctctctctctctccaccctcgccccatgtg
tgtgtatgtgtgtgtgtgtgtgagagagagagagagagagagagagagag
agagagagagagagacagagacagagacagagacagagacagagacagag
agtcgtagaaagacacagagagacagagacagagagaaagacagagagca
agctagactggctgagcagagagccctgggatgcttccacctctgccttc
ccagccctgggattatagatatggaccactgtgtctggcttttttgtggg
gtcgtttaaggacctgaagtcacatctttgctttcatggtgaacacttta
tagagagccatcccctagccctcaagaagccattcaaaaaggacccctgt
ggagccattcaccagtctatatgaagtagctgaaacttagaattctaaca
ttttctccttttagtttttcgatgtataaattttcagatgatgtcttaag
tttctgggaagagtcttttgtttctctctcttcagctcattctgagagaa
ctggaatggccacagggggagaattttattttcataaagcagacctgaaa
ttccctggtagagtaatgggcacagagaagatgaagagggagcagtgccc
atgattcttgtagaaaacagaaatgtgtttttcttcagatttgtctgaac
aatgagtaattgtaactgacactcctcactggcttcttaaaaagtgcttt
aacaaaagtcttgctgtgtgtcatggttttagaggagtaggtgctgtctt
ccctttgttaataagccaaattacttgaagtaatacttcattgagagaaa
aaaatttccctttgttttatattttttactttaaggtttgagaaactttt
tttcagtgaaggctagaaagggtttgggtatatatgctaggtggaaactt
cctagagatatataaattcttccagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80576620_80577806
seq2: B6Ng01-350E18.b_48_1202

seq1  GAATTCTTTTAAATGGATTAAATAAAAAATTCAAGAGTTGAGACCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATGGATTAAATAAAAAATTCAAGAGTTGAGACCATTTT  50

seq1  AATTTCAAAGTCTGATGATTTCAAAGGAATTCGGGAACTTGTTATTCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGTCTGATGATTTCAAAGGAATTCGGGAACTTGTTATTCGGA  100

seq1  TATGTAATAAAGAATTCAAAGCATTTTTTTAAGGTTATGGAAGTCCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATAAAGAATTCAAAGCATTTTTTTAAGGTTATGGAAGTCCAATT  150

seq1  CCAAGACAGATCTTGCTCTTATGAGTGACATTAGAGAATAAGATTCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGATCTTGCTCTTATGAGTGACATTAGAGAATAAGATTCCAAG  200

seq1  GCTAGAAGCACTCTGCCAGCAGGTTCTTGATTCAAAAGTGCTAAAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGCACTCTGCCAGCAGGTTCTTGATTCAAAAGTGCTAAAGAATA  250

seq1  AAAACCACCTGGACAACTTACATTTTCATTCTACAGGCACCCTTGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACCTGGACAACTTACATTTTCATTCTACAGGCACCCTTGTATTT  300

seq1  CGGTATTCAGAAAATGTGATTAGTGATATTTTAAATAATGTAAATAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATTCAGAAAATGTGATTAGTGATATTTTAAATAATGTAAATAGTAG  350

seq1  CAGGATATAAGAGGTCATTAAAATACAGTAAAAAATACAGTACCCCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATAAGAGGTCATTAAAATACAGTAAAAAATACAGTACCCCTGCT  400

seq1  GTTCACAACATTCTCTAATATCAAAAAAATTATTTAGTGCTGTGCTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAACATTCTCTAATATCAAAAAAATTATTTAGTGCTGTGCTAATT  450

seq1  TCCTCTTCACTCAGTGAATTATGCATCAATTCAGTGAATTTGTTAACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCACTCAGTGAATTATGCATCAATTCAGTGAATTTGTTAACCTA  500

seq1  CATCTAACTTTTAAAAATAATGCAAGGCCACAGTTCTTAATAGTCTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACTTTTAAAAATAATGCAAGGCCACAGTTCTTAATAGTCTTTGT  550

seq1  ATTTCTATTCCTTCATCAATATCTATCCATTTGCAAGGATTTAGATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTCCTTCATCAATATCTATCCATTTGCAAGGATTTAGATATGT  600

seq1  CTCTTGTCTGTTTTTAACACATATCACTACTAAAATAGCTGACTATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTGTTTTTAACACATATCACTACTAAAATAGCTGACTATATTT  650

seq1  CACTTTCGCATAGCTGTGAGTTAAGTTCGTAAGTGGGAGTGCATAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCGCATAGCTGTGAGTTAAGTTCGTAAGTGGGAGTGCATAACTCA  700

seq1  TCAAAGTGCTGAGATTAAGGAGTTGGATGCTCAGCCATAGATGCAACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCTGAGATTAAGGAGTTGGATGCTCAGCCATAGATGCAACATC  750

seq1  TCTACTGACTCACCAGCACTAAGACTCAGCAAACACTGCAGAAGAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGACTCACCAGCACTAAGACTCAGCAAACACTGCAGAAGAGGAAG  800

seq1  TAGGGAGAAAGAGATACGGGATGGGGAAGAGTGCTGTCAATTACTGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAAAGAGATACGGGATGGGGAAGAGTGCTGTCAATTACTGCCCT  850

seq1  ATGGCTATGGCATGTTAAAATCATGAGCTCATAACTGCTGTGGTTACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATGGCATGTTAAAATCATGAGCTCATAACTGCTGTGGTTACCTG  900

seq1  CATAAGACCTATACAAAAATCAACTCACCGAAATCTCAGTGTATATGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACCTATACAAAAATCAACTCACCGAAATCTCAGTGTATATGGGG  950

seq1  TGAATTATCTCTAGTCCTGACTCTTTGCTGATGAGATTTGGGAAAAGAAT  1000
      |||||||||||||||||||||||||||||||||||| ||||| |||||  
seq2  TGAATTATCTCTAGTCCTGACTCTTTGCTGATGAGA-TTGGGGAAAGA--  997

seq1  AATTGGGAGGGAAGGGAAAAATCATCTGTTTTGAGGATGTGGCCACTGTT  1050
       || |||||||||||| ||||||||||| ||||| ||||||| ||||| |
seq2  TATGGGGAGGGAAGGG-AAAATCATCTG-TTTGA-GATGTGG-CACTG-T  1042

seq1  AGGTTCCTTGCTCGCCATTGGATAACTCTATACCCGTGCACATATAAGTA  1100
      ||  ||  |||||| |||  ||| |||||||| |||||||||||  ||||
seq2  AG--TC--TGCTCG-CAT--GAT-ACTCTATA-CCGTGCACATAATAGTA  1083

seq1  GTTCTACCTAGACTTAGTAGGCTATAAAAAAGTACAGGACATGAAATTGG  1150
      | |||| |||||| ||||| ||||| ||||||| | | || ||||     
seq2  G-TCTA-CTAGAC-TAGTA-GCTAT-AAAAAGTTCCGAAC-TGAA-----  1122

seq1  GAGGGAATGTTGATGAGAACATGGTGAGTCAGAGGGA  1187
        | ||||||||   ||||| |||||||||| |||||
seq2  -TGAGAATGTTG--TAGAACCTGGTGAGTCA-AGGGA  1155

seq1: chr3_80680712_80681714
seq2: B6Ng01-350E18.g_65_1093 (reverse)

seq1  TATTCTGGAAGA--TTATAATACTCTA-GAAG-TTCCA-CTGGCAT-TAT  44
      ||||||||||||  |||||   ||||| |||| ||||| || |||| |||
seq2  TATTCTGGAAGAATTTATATATCTCTAGGAAGTTTCCACCTAGCATATAT  50

seq1  AACCAAACCC--TCTAG-CATCACTGAAAAAAAAGTATCTCAAAAACTAA  91
      | ||||||||  ||||| | |||||| ||||||||| |||||||   |||
seq2  ACCCAAACCCTTTCTAGCCTTCACTG-AAAAAAAGTTTCTCAAACCTTAA  99

seq1  AGT-AAAAATATAAAACAAAGG--AAATTTTTTCTCTCACTGAAGTATTA  138
      ||| ||||||||||||||||||  || |||||||||||| ||||||||||
seq2  AGTAAAAAATATAAAACAAAGGGAAATTTTTTTCTCTCAATGAAGTATTA  149

seq1  CTTC-AGT-ATTTGGCTTATTAAC-AAGGGAAGACAGCACCTACTCCTCT  185
      |||| ||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CTTCAAGTAATTTGGCTTATTAACAAAGGGAAGACAGCACCTACTCCTCT  199

seq1  AAAACCATGAACACACAGC-AGAC-TTTGTTAAAGCACTTTTTAAGAAGC  233
      ||||||||| ||||||||| |||| |||||||||||||||||||||||||
seq2  AAAACCATG-ACACACAGCAAGACTTTTGTTAAAGCACTTTTTAAGAAGC  248

seq1  CAGTGAGG-GTGTCAGTTAC-ATTACTCATTGTTCAGAC-AATCTGAAG-  279
      |||||||| ||||||||||| |||||||||||||||||| ||||||||| 
seq2  CAGTGAGGAGTGTCAGTTACAATTACTCATTGTTCAGACAAATCTGAAGA  298

seq1  AAAACACATTTCTGTTTTCTTCAAG-ATCATGGGCACTGCTCCCTCTTCA  328
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AAAACACATTTCTGTTTTCTACAAGAATCATGGGCACTGCTCCCTCTTCA  348

seq1  TCTTCTCTGTGCCCATTACTCTACCA-GGAATTTCAGGTCTGCTTTATGA  377
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTCTCTGTGCCCATTACTCTACCAGGGAATTTCAGGTCTGCTTTATGA  398

seq1  AA--TAAATTCT-CCCCTGTGGCCATTCCAGTTCTCTCAGAATGAGCTGA  424
      ||   ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTCTCCCCCTGTGGCCATTCCAGTTCTCTCAGAATGAGCTGA  448

seq1  AGAGAGAGAA--CAAAGACTCTTCCCAGAAACTTAAGACATCATCTGAAA  472
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAACAAAAGACTCTTCCCAGAAACTTAAGACATCATCTGAAA  498

seq1  ATTTATACATCGAAAAACTAAAAGGAGAAAATGTTAGAATTCTAAGTTTC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACATCGAAAAACTAAAAGGAGAAAATGTTAGAATTCTAAGTTTC  548

seq1  AGCTACTTCATATAGACTGGTGAATGGCTCCACAGGGGTCCTTTTTGAAT  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCATATAGACTGGTGAATGGCTCCACAGGGGTCCTTTTTGAAT  598

seq1  GGCTTCTTGAGGGCTAGGGGATGGCTCTCTATAAAGTGTTCACCATGAAA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTGAGGGCTAGGGGATGGCTCTCTATAAAGTGTTCACCATGAAA  648

seq1  GCAAAGATGTGACTTCAGGTCCTTAAACGACCCCACAAAAAAGCCAGACA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGTGACTTCAGGTCCTTAAACGACCCCACAAAAAAGCCAGACA  698

seq1  CAGTGGTCCATATCTATAATCCCAGGGCTGGGAAGGCAGAGGTGGAAGCA  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCCATATCTATAATCCCAGGGCTGGGAAGGCAGAGGTGGAAGCA  748

seq1  TCCCAGGGCTCTCTGCTCAGCCAGTCTAGCTTGCTCTCTGTCTTTCTCTC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCTCTCTGCTCAGCCAGTCTAGCTTGCTCTCTGTCTTTCTCTC  798

seq1  TGTCTCTGTCTCTCTGTGTCTTTCTACGACTCTCTGTCTCTGTCTCTGTC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTCTGTGTCTTTCTACGACTCTCTGTCTCTGTCTCTGTC  848

seq1  TCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  898

seq1  TCTCTCTCTCACACACACACACACATACACACACATGGGGCGAGGGTGGA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCACACACACACACACATACACACACATGGGGCGAGGGTGGA  948

seq1  GAGAGAGAGAGAGAGTGAATTAGCTTAAAAACCTAAGTCCTTCTCCCAGA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGTGAATTAGCTTAAAAACCTAAGTCCTTCTCCCAGA  998

seq1  TGGAATACAAACAGTTTTTCAGGGTGAATTC  1003
      |||||||||||||||||||||||||||||||
seq2  TGGAATACAAACAGTTTTTCAGGGTGAATTC  1029