Query= MSMg01no045_g03.b1 MSMg01no045_g03.b1 CHROMAT_FILE:
MSMg01no045_g03.b1 PHD_FILE: MSMg01no045_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:19 2005
(566 letters)
>mm_chr3_146173420_146174385
Length = 966
Score = 1031 bits (533), Expect = 0.0
Identities = 553/563 (98%), Gaps = 8/563 (1%)
Strand = Plus / Plus
Query: 6 gaattctatttagaacattcctattacagtgtggcttatgtc-aaagtgaa-tacaggtt 63
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 210 gaattctatttagaacattcctattacagtgtggcttatgtcaaaagtgaagtacaggtt 269
Query: 64 ctgaatttataggctctcaaattgtttgggtggctttttttgttgttgttgtttttgttt 123
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 270 ctgaatttataggctctcaaattgtttgggtggcttttt------ttgttgtttttgttt 323
Query: 124 tgttttttttttttgagggggatacataagttgtattgttaaactaacaaaattcatggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttttttttttttgagggggatacataagttgtattgttaaactaacaaaattcatggc 383
Query: 184 aagcagtcaccatgtctgtttcagtaatggagaagaggctgaaggctggccctacagtgc 243
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 aaacagtcaccatgtctgtttcagtaacggagaagaggctgaaggctggccctacagtgc 443
Query: 244 gagtgtgtggtgaaacaggatggggaatgtttcagagaaaaggatgtctgtcaggcagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtgtgtggtgaaacaggatggggaatgtttcagagaaaaggatgtctgtcaggcagtg 503
Query: 304 caggctttctgaaagctacgtgtgctatcacttgtgcacctatataagacactaaagcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggctttctgaaagctacgtgtgctatcacttgtgcacctatataagacactaaagcaa 563
Query: 364 agagaaaactgtattaaattgatgaatgcttgcttcttacagtggaattgacaattttaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagaaaactgtattaaattgatgaatgcttgcttcttacagtggaattgacaattttaa 623
Query: 424 aatgacgacaacctaattgctaaaaccaaaactgaccttgtcgttctatttggggaagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatgacgacaacctaattgctaaaaccaaaactgaccttgtcgttctatttggggaagct 683
Query: 484 gtgatacaggcagcaatcactttaaaaatcattcttttctggagtaattagtcatataaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgatacaggcagcaatcactttaaaaatcattcttttctggagtaattagtcatataaa 743
Query: 544 atatactaacctagtcaaactta 566
|||||||||||||||||||||||
Sbjct: 744 atatactaacctagtcaaactta 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_g03.g1 MSMg01no045_g03.g1 CHROMAT_FILE:
MSMg01no045_g03.g1 PHD_FILE: MSMg01no045_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:19 2005
(376 letters)
>mm_chr3_146197597_146198375
Length = 779
Score = 648 bits (335), Expect = 0.0
Identities = 367/379 (96%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gcttaagcgccagattgcctgggtgtgaatcctggttcccaccaagtagtcaacttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gcttaagcgccagattgcctgggtgtgaatcctggttcccaccaagtagtcaacttctct 615
Query: 61 gtgcctcagatctccactctgtgaaatgaggcattggtgtgcccaatcctttgg---gta 117
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 614 gtgcctcagatctccactctgtgaaatgaggcatcggtgtgcccaatcctttgggtagta 555
Query: 118 gtcaaggtgattcatttaaatcacaaagagaaagcacagaggacactgggggaatcagaa 177
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 554 gtcaaggggattcatttaaatcacaaagagaaagcacagagaacactgggggaatcggaa 495
Query: 178 atgaactgctgttagtcggcttgcttgctgcaagaaaaaaatgcaatccttgttatatga 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atgaactgctgttagtccgcttgcttgctgcaagaaaaaaatgcaatccttgttatatga 435
Query: 238 ccatgatgtttggtcattatcagtatctaattaacatgtgattaatatgtaaatgagacg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccatgatgtttggtcattatcagtatctaattaacatgtgattaatatgtaaatgagacg 375
Query: 298 catggcgacacaagggatagaaaatcaggaggttctatgtcataatagcacccagggtct 357
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 374 catggtgacacaagggatagaaaatcaggaggttctatgtcataacagcacccagggtct 315
Query: 358 ttggtaatgtgaccctcag 376
|||||||| ||||| ||||
Sbjct: 314 ttggtaatatgaccttcag 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 779
Length adjustment: 9
Effective length of query: 367
Effective length of database: 770
Effective search space: 282590
Effective search space used: 282590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
