BAC Information

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BAC

Clone NameMSMg01-045G06
Chromosome3 (Build37)
Map Location 18,029,961 - 18,030,158
singlet/doubletsinglet
Overlap geneCyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045G06.T7 (MSMg01no045_g06.b1)MSMg01-045G06.TJ (MSMg01no045_g06.g1)
ACCAG276035AG276036
length787756
length of high quality
(start - end)
202 (123 - 324)112 (124 - 235)
definitionCHROMAT_FILE: MSMg01no045_g06.b1 PHD_FILE: MSMg01no045_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:20 2005CHROMAT_FILE: MSMg01no045_g06.g1 PHD_FILE: MSMg01no045_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTTATTCCCNCGTCAAATTGCGGCGCTAAAGACTC
CTATTCAAGAGAGAGCGGGAATCTTTTTATGCCAATCTTATGAAGGATTT
TCTCAATTGAGGTTCTTCCTTGAAGATAACTCTAGCTTGTGTGACATAAA
CTTGCTAGCACACATATCAAGTATGATTTTCACTTTGGTGAGAAACCGCT
AATCATGTGAAAAGATGACTTCTTTCTAGAAGATCCTGATAACTCTGAAG
CTAAGGGAAACTTCTATGACAATGAGGGAATTAGAACTCACTCTCTTACA
GAGCTTTAAGTTAGTAAATGAAATAAATTCATATGCTAGGGTGCACACAT
TTCATTTGAAATTTCAAGACTAGAAATGATGCTACATAATAAATGGGAGG
GCAGTGGGGACTAAGCTAACAACATTTTGTTGTTTCACCGTTTTTGGTTA
TCTATTATCTTTATAAGGGCCGAATAAATCTTACCTGCTCGTGCCCCCAT
GGTCGTCCCAATCATTTTTATTCCTGGGGCCCTGGGTTGCCATGGAAATG
GCTTGCGATTGTTTATAAAAAACCCCACTTTATTTAATAAACTCAAGGTT
CCCAAAAAGGGTTCTGGTTATTCTTTCCCACCATTTTATGTTTATCACAA
AAACTTCGCCTTCCTCTAAAGCCTTTCTTTATTGTGTATACAACCCTCCC
GTGTTGTCCCACGAAAACACCCCGTATTAATAAATCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGAACG
ANNCCCTATGAAGTGGGTAGCCTGGTGGTCGCCTGTTTCAAAAATAGAGG
TGAACTATAGAATTTCCGCGAAATTCTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAAGTTCAACATCCTTAATCATCAGGGAAATGCTA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGCGCATGTGGAGAAAGAGGAT
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCATAATATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATTCTGAAGATGCCCCAATTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCCGA
AGCTGGAAAGAACCTAGATACCCTTCAATATGAGTAATGAAAACCGAAAA
AGTGGTATATCTACTCAACGGAGTAACTACTCAGCTAATACAAAGAATGA
AATTTATGAAATCCTAACCAAAGGTATGGAACTGGAATGTATCATCCTGA
AGTGAAGTAACACATTCAATAAGAATCTCACTAAAGAATGATTTTCTCTG
ATCATTTGATTTTTAGCTCCCAATTCTATCATAACCCCAGAATTTTACAT
TATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_g06.b1 MSMg01no045_g06.b1 CHROMAT_FILE:
MSMg01no045_g06.b1 PHD_FILE: MSMg01no045_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:20 2005
         (202 letters)



>mm_chr3_18029668_18030269
          Length = 602

 Score =  292 bits (151), Expect = 9e-84
 Identities = 187/199 (93%), Gaps = 6/199 (3%)
 Strand = Plus / Minus

                                                                       
Query: 9   gcca-atcttatgaagg-attttctcaattgagg-ttcttccttgaagataactctagct 65
           |||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 491 gccagatcttatgaaggcattttctcaattgaggtttctttcttgaagataactctagct 432

                                                                       
Query: 66  tgtgtgacataa-acttgctagcacacatatcaagtatgattttcactttggtgagaaac 124
           |||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 431 tgtgtgacataagactcgctagcacacagatcaagtaggattttcactttggtgagaaac 372

                                                                       
Query: 125 cgctaatcatgtgaaaagatgacttctttctagaagatcctgataactctgaagctaagg 184
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccccaatcatgtgaaaagatgacttctttctagaagatcctgataactctgaagctaagg 312

                              
Query: 185 ga-aacttctatgacaatg 202
           || || |||||||||||||
Sbjct: 311 gagaa-ttctatgacaatg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)