BAC Information

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BAC

Clone NameMSMg01-045K04
Chromosome3 (Build37)
Map Location 35,073,164 - 35,073,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045K04.T7 (MSMg01no045_k04.b1)MSMg01-045K04.TJ (MSMg01no045_k04.g1)
ACCAG276217AG276218
length740784
length of high quality
(start - end)
190 (172 - 361)41 (202 - 242)
definitionCHROMAT_FILE: MSMg01no045_k04.b1 PHD_FILE: MSMg01no045_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:38 2005CHROMAT_FILE: MSMg01no045_k04.g1 PHD_FILE: MSMg01no045_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNCCCCNNCCCCNNNNNNNNAAAATCCCTTTTAAGCAGC
NCCGTTCTAAATTGCGGCGCTANACGAGCACTATTTCTGAGGTGGGCGGN
AATCTGTGGTTTCCACAAAGAGAAAAGCTGCAAATTACATCTGTCTTCTG
TTCCCAGCAACATACATTATCAGGAGAGAATGCTGGGAAGTCCCACAGCA
AAGAAGCTTGTGAACTTTCAGTCCCCAGACTCCCCAAACCAACATCTTGT
AGCATGTTGGCTGTATACTGTCCCATGGAAAGTCTGCATTAAAGCCAGAA
AATGCTCCCCAGAGCCTGGATCCACCCTAAGCTTTCCTAAATAAATGTCC
CATTCCCACTGTATCTGTTCATGTTGTTAAATATGGACTCATTTATAAAG
TGCATTTTTAACAGCTGTCATGCTGTGATCAGGTTCTAGGCTTACCCACA
CAGAATCTTCCTTGTGTGAGTAGCTTAGCTACTCTAGATAGATAAGAAAT
AGCTCTTTACAAGGTGGCTGCTCCGAATAGCCAACTTGTGATGATGTAAT
ATTGGATGCTTGTCTGTGAGCTCCCTCAAGTAATAAGTAAGACAAGGATA
GCAATGCTTAATGCCTCATCTACATCATTGACAATCTGCAGAGAAACCTT
TGTTTCCTCTCTACCTTTGGTCCCTTTCAGTCATGATTTCCCCGTTTCTT
CTAACTTCCTCCAATACATAATGAGCTCCTTTGCCCCGTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCAG
AATTNCCCCCGATGATATGAGTAGCCTGGCGGACGCCGGATGCGTACNCG
GAGGNGAANNNAAGAATTTACCACAAATTCTTACATCAGCGCATAGGCCT
GCTGAGGTGGGGCTCATGGCGACAAACAAAATAGCAACCCCAGCTCTGGA
CACTCCTCAGAATCCTGCGTCCTGTGCAGGCCCGAGGGCCCAGCTGTATT
AAGGGGCCGTTGGAGTTCCCCTGCTATTTGTCCCCTTTCTGACGATTAAA
ACTTCCGCTGTGTTGTGCTCTTCTGTGCTTGAGAATCTAGAGCGTGTTGT
GTGCCTCATGATTAGCAGGTTCTGTTTTTTTTGCACCAAAAGATACCATT
CTGACTTTTAAAACCTTTATATGCCCTACTAACTGTATTTGAGATGAGTT
TCTACGTTTCTTCTAGGTAACACATTGTCATACTGGCTACATCTACTTCC
ATTTTCTTGTGCCTTTCGTCCTCCAATTGCTCTATAACATAGCATACGTC
CGCGTTTTTCCTGTGTGCATAGTTACAGTTGACTAATTGTTACTACTGCC
CCTTTTCTTCACTCTCCCCCTTTTGATTATCATGCACATATATTCCTATC
TCCCAATAATATCTAGATTTCACCTAATTCATTACACATATTACACCTTT
CATTCTTCTCCCCCCTTTCGTCAATTCTCTACAACTTCCAAAAATTGATC
TTTTCTATCACATGTTACATTATCATTTCGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_k04.b1 MSMg01no045_k04.b1 CHROMAT_FILE:
MSMg01no045_k04.b1 PHD_FILE: MSMg01no045_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:38 2005
         (190 letters)



>mm_chr3_35072964_35073553
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagagaatgctgggaagtcccacagcaaagaagcttgtgaactttcagtccccagact 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 aggagagaatgctgggaagtcccacagcaaagaagcttatgaactttcagtccccagact 331

                                                                       
Query: 61  ccccaaaccaacatcttgtagcatgttggctgtatactgtcccatggaaagtctgcatta 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 330 ccccaaaccaacatcttgtagcatgttggctgtatactgtcctatggaaagtctgcatta 271

                                                                       
Query: 121 aagccagaaaatgctccccagagcctggatccaccctaagctttcctaaataaatgtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagccagaaaatgctccccagagcctggatccaccctaagctttcctaaataaatgtccc 211

                     
Query: 181 attcccactg 190
           ||||||||||
Sbjct: 210 attcccactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)