BAC Information

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BAC

Clone NameMSMg01-045M03
Chromosome3 (Build37)
Map Location 15,728,693 - 15,728,801
singlet/doubletsinglet
Overlap geneLOC100038947
Upstream geneEG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
Downstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045M03.T7 (MSMg01no045_m03.b1)MSMg01-045M03.TJ (MSMg01no045_m03.g1)
ACCAG276310AG276311
length7521,162
length of high quality
(start - end)
110 (106 - 215)---
definitionCHROMAT_FILE: MSMg01no045_m03.b1 PHD_FILE: MSMg01no045_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:47 2005CHROMAT_FILE: MSMg01no045_m03.g1 PHD_FILE: MSMg01no045_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNNAACCCCNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAA
AAATAAACCAACCTTCTATAATTGCGGCGCTAAACGACTCCTATTCAAAG
AGAACCGCGGAATTCATACATTCCCCTACAGTCAAGAGCATTGAGATAGA
TACACCCAACATTTCTGTTTGCTGCCTGATGTTCACCTACATTTCTTCAC
TGATTTTATGCAGTGTGGCGCCCATAGTCTAATGAAATGAAGGAAGTTAC
ATTAAGAGTGATTTTACCATATCAGTTAACAATCAAGACAAACCTCCACA
GACCTACCAACAGGCTAACACAATTTTACCAAGTCCTTAAAATGCAATGT
TCTTACTATGTAATTGCAGGTTGTGTCAAGTTAACATTTACAAGTATCAG
ATGCTGTTCTATGAATTTGGCCACGTAAAAAATCATACCTCTGACCTTCT
ATATTCTATACCCCATGTATTATGATTATAATCCAAAGCTACGCTCCCTG
TTGGGTAATGTCTTGACTGCTATTGATCCTGATGCTCTCTAATATGTTGC
GATATCAACTGTCCCCTACAGAAATATGCTACCCATCTCTGTTTCCACTC
TTATAACTACACGTTTAATTCTTTCGATGGACCACTAACCTTTTGCTATC
ATCTTCCTGTCGTATCACTAATACTTTTCTATGCCATCCATTACTCTCGC
GAAAAATGCCGCCTTCTCCAATATTTTCTATTACTAAATCATGAACATCT
CC
TTCTCACCCCCCCACACACTTTCACACCTCTCCCCCACCCCCTCCTCTAA
TCTTCCTCTTATTCTTTTTATTCTATTTTNNCCCCTCATGAATAGTGAGC
TAGAGCCTGGGNNGGACGCCCCGGGCCTACCCCACCCATAGAGGNGNACA
CNNANNAGAAGGTATTCGCCGACAATCTCTCACCCTGNAGGNAACACCAC
AATGCGGCAGACGAAACACTCTGCAACAAAACGCTTCTAACATCCCTCCT
AATCACTCACGAGCAAACTGCACAACCACAACACAACCCCTGTAGCATCT
TCCACCTCCACACTCCGCTTCAGAACTGGCCTAACCACTCAAACCCTTCT
CTGCTGACCCGCCTTATGCTTGTTCGCAGGACCGCGGATTAAACGAACGA
ACACTCCCTCCCATTGCTTGTGCGGCCATATGCCTAGCTTTGCCACAACT
CCACTCCTGGCAACATCTCTCCCTGGCTGGACTCTTTCTTGATTTATTCG
CGACATCATCCATCTACTCGCGACCAATACCTTGCATATTACCTTCTTCT
TCGCGCCCATACTACTCCAGTACGTATCCGCCTTTCCCCCCGCGCTTACG
CACGTGTACATCCCTGCACCCCCCTTTCATTGATTTTCTTAACTACAAAC
TTTCTCATTTTCACCCACACATCCTCTCGCAAATCCCTGCGAATTAAGTA
CATTTCCCTCTAACTGTTCTCCCCCTCCCTATCCTGTACTCCATACTTAG
TATCTCTCCTCGTCACGTCTGTCTGTCTTCACTACTTTTCTCAACTACCT
CCATTGGTCACCATAATCCTTACTCTTCTCCGTCTCTATATCACACACAT
CGGGATCTGCGCTCTCTTTTCACGCCACTACCTCTCTCCGCCACCCNTCA
TTATTGTTGAGGCAATCGTGTCCCCTCCGGGCTCATCCCTCTCTCCTTTC
TTATTCTCTCGTCACTCTCTCGCATTATTCTCTCTCCACCGCGACGCCTC
TCTACTATATTGTGTTGACACGCCTCACGTCTATAGCATACCACCCGCTC
ATCATTTTCCACGCTCTGACTAACACCCTCTACTGTAACCTTCATCCGCA
TTCTCTACTCCCTCTCACAAATTTCTCTTCTCCCCCTCTCTCTAATCCCG
TATTACCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_m03.b1 MSMg01no045_m03.b1 CHROMAT_FILE:
MSMg01no045_m03.b1 PHD_FILE: MSMg01no045_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:47 2005
         (110 letters)



>mm_chr3_15728490_15729001
          Length = 512

 Score =  172 bits (89), Expect = 5e-48
 Identities = 104/111 (93%), Gaps = 6/111 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatacattccc---ctacagtcaagagcattgagatag-atacacccaacattt 59
           |||||||||||||  ||   |||||||||||||||||||||||| |||||||||||||||
Sbjct: 312 ggaattcatacat--ccaatctacagtcaagagcattgagatagaatacacccaacattt 255

                                                              
Query: 60  ctgtttgctgcctgatgttcacctacatttcttcactgattttatgcagtg 110
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtttgttgcctgatgttcacctacatttcttcactgattttatgcagtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 512
Length adjustment: 8
Effective length of query: 102
Effective length of database: 504
Effective search space:    51408
Effective search space used:    51408
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)