BAC Information

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BAC

Clone NameMSMg01-046B13
Chromosome3 (Build37)
Map Location 93,063,939 - 93,064,576
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046B13.T7 (MSMg01no046_b13.b1)MSMg01-046B13.TJ (MSMg01no046_b13.g1)
ACCAG276558AG276559
length678688
length of high quality
(start - end)		647 (32 - 678)577 (75 - 651)
definitionCHROMAT_FILE: MSMg01no046_b13.b1 PHD_FILE: MSMg01no046_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:12 2005CHROMAT_FILE: MSMg01no046_b13.g1 PHD_FILE: MSMg01no046_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATTCCGAGAGGATCCGCGGAATTCTCATGT
TTGCGATTTAAAAAAAAAATCAGAGAAAAAAAAACCTCAGAGGAATAAAA
TAAAATAGACGACAGCCTCTTGACGGCCTCTTTATAGCCTGATTTTCCAC
TGAATTTCTGTTAACTTCAGAGTGAAAGTCAGGAAATATGTTTGTCTGTT
TCAACAGGAAATGAAAAGCTGTGGTTTCTTTCAAAATTAATAAAGATTAG
ATTTGACCAGGAGATATGTGAAAATCTTGACTTCAGACATGAAGAAAGAA
ATCAAGAAGAATAACAAAACAGGTGGCATGAATGCTGAATCCTCTACATA
GAAACTGCTGTTACTTGGTGAGACATTGCTACATAGCCAATAAATCTTAT
TGGCTACAGAGTCCTCAGTATGTATTATTACACGCCATCCTTTTAAATGC
ATGGATGGAAATTCACATTACAGTTTGGTTATACAGTCCAAACAGACTCA
TAAAGTTTGATGCCTTTCACCTGCTCAGACAAAGAGCAGAGAATCCTCTG
TATCTGATTCGTTCACACTGCACATTCCATACCTATTAATGCAAAAAATG
TCTATTATCTTTAAAAGTTTGTGTGTTTTCAGAAAAAAAGGACCAGACTG
ACTCAATAGCTGTTTCCTCAAAAATACC

CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTTAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGAATATTAGTCCCCTATCCAATTTGGGATAGGTAAAGATCCTTTC
CCAAACTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGC
AGAAACTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACA
GCACAAGCCATTGCTGTAGAACATATTCTTAAACCTCTTTATCTTCTTAT
AATCACAACACAAAAGAAGCTGTAAATCTAAAGATTTAGCAAAGTGATTA
AAAAGAACAAGAACAACAAAAAAATCAAACAAATAAAATTGGAAACAGAA
TAGAACATATTAAAGCACATGATACAGACATACAGAAGATCATGAGATGG
CTACATTTAATCATAAGTGAGCAGATGCCCATTTGCAGAAGAAATGGACA
AATTCCTAGAAGTAGAACTCACTAATTCTCAATCATGAAGAAGTAAAAAA
CTTGAACAAATAAATACCAAGAAAGTGAATAAAAACCTAGACACACACAC
ACACACACACACACACACACACACACACACTGCTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_b13.b1 MSMg01no046_b13.b1 CHROMAT_FILE:
MSMg01no046_b13.b1 PHD_FILE: MSMg01no046_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:12 2005
         (647 letters)



>mm_chr3_93063732_93064777
          Length = 1046

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%), Gaps = 1/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctcatgtttgcgatttaaaaaaaaaatcagagaaaaaaaaacctcagaggaataa 67
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 208 gaattctcatgtttgtgatttaaaaaaaaaatcagagaaaaaaaaa-ctcagaggaataa 266

                                                                       
Query: 68  aataaaatagacgacagcctcttgacggcctctttatagcctgattttccactgaatttc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aataaaatagacgacagcctcttgacggcctctttatagcctgattttccactgaatttc 326

                                                                       
Query: 128 tgttaacttcagagtgaaagtcaggaaatatgtttgtctgtttcaacaggaaatgaaaag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgttaacttcagagtgaaagtcaggaaatatgtttgtctgtttcaacaggaaatgaaaag 386

                                                                       
Query: 188 ctgtggtttctttcaaaattaataaagattagatttgaccaggagatatgtgaaaatctt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgtggtttctttcaaaattaataaagattagatttgaccaggagatatgtgaaaatctt 446

                                                                       
Query: 248 gacttcagacatgaagaaagaaatcaagaagaataacaaaacaggtggcatgaatgctga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gacttcagacatgaagaaagaaatcaagaagaataacaaaacaggtggcatgaatgctga 506

                                                                       
Query: 308 atcctctacatagaaactgctgttacttggtgagacattgctacatagccaataaatctt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atcctctacatagaaactgctgttacttggtgagacattgctacatagccaataaatctt 566

                                                                       
Query: 368 attggctacagagtcctcagtatgtattattacacgccatccttttaaatgcatggatgg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attggctacagagtcctcagtatgtattattacacgccatccttttaaatgcatggatgg 626

                                                                       
Query: 428 aaattcacattacagtttggttatacagtccaaacagactcataaagtttgatgcctttc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaattcacattacagtttggttatacagtccaaacagactcataaagtttgatgcctttc 686

                                                                       
Query: 488 acctgctcagacaaagagcagagaatcctctgtatctgattcgttcacactgcacattcc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acctgctcagacaaagagcagagaatcctctgtatctgattcgttcacactgcacattcc 746

                                                                       
Query: 548 atacctattaatgcaaaaaatgtctattatctttaaaagtttgtgtgttttcagaaaaaa 607
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 747 atacctattaatgcaaaaaatgtctattacctttaaaagtttgtgtgttttcagaaaaaa 806

                                                  
Query: 608 aggaccagactgactcaatagctgtttcctcaaaaatac 646
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aggaccagactgactcaatagctgtttcctcaaaaatac 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space:   659932
Effective search space used:   659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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