CATAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGATCCGCGGAATTC
AAACTGACGCAGGGTTTCCTCTTTGTTATAGCTAATTTTTAAGAACAGCT
AATCTTGCTCCGGCAGCTGTGGTCATCATGATTTCTAGTCAGTCCTCTCA
GATGGGGAAGGGCCACCATGTGATATTGAACTATTGAACTTGTTTAAATT
GGCAGGGAAAGGGAAAATTCCTCAAGCAGCAGGTGGGAGGGGGAGAGAAA
AGCTACTGCAAACAGCTTTGGTGCCCATTAGCCAAGCTAAAAGCTGTATT
CAGAGCATTCACTATGAAAAGCAGTAAGGAGAATTATCAAAAAGCCCAAA
ACTAATGTAGTATATGACCTAGCTATACTACTACTTGGGTTTTTGGGTAC
ATGCCCAAAACATGACATCATATTCCATAATGCTCACCTACTCATGGTCA
TTGCTGCTGTATCCAAAATAGCTAAATTTCTTTCAATAAGGAATGGATAA
TGAAAATGTAATTCATATACACTATGCAACACTATTAAGTTATAAGAAAA
ATGAAATAATGTATTTTGCAGGTAAATGTATGAAATCTGAAAAGATCACA
TTGTGTGAGATAATCCAGACTCAGAAAGACGTGTCACATGTTCTATCAAC
TAGCTCCAAATCGTTACAAGTAAATACATATACTGA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGAATCAAGAACTTTT
GTCAAATGCTTTTTCAGCATCTAATGAAAGTATCATGGTTTTTTTTCTTT
GAGTTTATTTATGTAGTGGATTATGTTGATGGATTCCCATATATTGAGCC
ATCCCTGCCTCCCTGGAATGAAGCCTACTTGATATTTGACCATGGTAAAT
AATCATTTTGATGTGTTCTTGGATTTGGTTGGCAAGAATTTTACTGAGTA
TTTTTGCATCAATGTTCATAAGGGAGATTGTTCTGAAGTTCTCTTTCTTT
GTTTGGTCTTTGGGTGATTTAGGTATAAGCTTAATTGTGGCTTTATGTAA
TGAATTGGGTCGAGACTCTAATCAAGCAAGTGAAAGATCTATATGACAAG
AGCGTCAAGACTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGGAA
AGATCTACCATGCTCATGGATTGGCAGAATTAATATAGTAAAAATGGCCA
TCTTGTGGAAAACAATCTACAGATTTAATGAATTCCCCATGATAATTCCA
ACTAATTTCTTCATAGAGTTAGAAAGAACAATTGGCAAATTCATTTGGAA
CAACCAAAATTAAAAAAAAACAACAACAACAAAACAAA

Query= MSMg01no046_p11.b1 MSMg01no046_p11.b1 CHROMAT_FILE:
MSMg01no046_p11.b1 PHD_FILE: MSMg01no046_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:14 2005
         (648 letters)



>mm_chr3_113293661_113294708
          Length = 1048

 Score =  845 bits (437), Expect = 0.0
 Identities = 461/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cggaattcaaactgacgcagggtttcctctttgttatagctaatttttaagaacagctaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cggaattcaaactgaggcagggtttcctctttgttatagctaatttttaagaacagctaa 410

                                                                       
Query: 65  tcttgctccggcagctgtggtcatcatgatttctagtcagtcctctcagatggggaaggg 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcttgctcctgcagctgtggtcatcatgatttctagtcagtcctctcagatggggaaggg 350

                                                                       
Query: 125 ccaccatgtgatattgaactattgaacttgtttaaattggcagggaaagggaaaattcct 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccaccatgtggtattgaactattgaacttgtttaaattggcagggaaagggaaaattcct 290

                                                                       
Query: 185 caagcagcaggtgggagggggagagaaaagctactgcaaacagctttggtgcccattagc 244
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 289 caagcagcaggtgggagggggagagaaaagcttctgcaaacagctttgttgcccattagc 230

                                                                       
Query: 245 caagctaaaagctgtattcagagcattcactatgaaaagcagtaaggagaattatcaaaa 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 229 caagctaaaagctgtattcagagcagtcactatgaaaagcagtaaggagaattatcaaag 170

                                                                       
Query: 305 agcccaaaactaatgtagtatatgacctagctatactactacttgggtttttgggtacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 agcccaaaactaatgtagtatatgacctagctatactactacttgggtttttgggtacat 110

                                                                       
Query: 365 gcccaaaacatgacatcatattccataatgctcacctactcatggtcattgctgctgtat 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 109 gcccaaaacatgacatcatattccataatgctcaactactcatggtcattgctgctgtat 50

                                                            
Query: 425 ccaaaatagctaaatttctttcaataaggaatggataatgaaaatgtaa 473
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ccaaaatagctaaatttctttcaataaggaatggataatgaaaatgtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)