BAC Information

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BAC

Clone NameMSMg01-047I03
Chromosome3 (Build37)
Map Location 35,728,338 - 35,728,868
singlet/doubletsinglet
Overlap geneAtp11b
Upstream geneLOC665655, Ube2l3-ps1, LOC625963
Downstream geneLOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047I03.T7 (MSMg01no047_i03.b1)MSMg01-047I03.TJ (MSMg01no047_i03.g1)
ACCAG277555AG277556
length701702
length of high quality
(start - end)		535 (46 - 580)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no047_i03.b1 PHD_FILE: MSMg01no047_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:52 2005CHROMAT_FILE: MSMg01no047_i03.g1 PHD_FILE: MSMg01no047_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCATTGGACTTAGTGGATTATTGCTATTGGCAGTGGTTCAGCA
ATGAGTGATTTAGTATTTCATCTACTCTGCTCTGTCACTGTTATGGAAGT
GTGAGGACCATGTGTAGCTCCTCTGAGGGATAAAGTTCTAGCTTAGAGGA
GTCAGCCTTGTCCAGGAAGCGTCTTCATGGTGTGTATGATGGCTAGACTT
GAGGCTGGATCGTTGTATGTCTTAAAATCAACCCCTCCTCTTTGGGATAA
TAAATATTAATTTTGAAACTTCATCCTTCTTTGTGGTTTCTAAACTATTT
CCAGTAAATCTCAATTGTAATTTTAAATAACTTTATACTAAGAATATAAA
ACTGATTTGGGGGCTGTGGAGATGGCCTGCTAAGTAACGCGATGGCTAGA
CAGGCTGAGCAGATAAGGCCAACTTTCTAGTACCCGCATAAAATCCAGCC
ATAGTGCAAATCTATAACCCAAGCAGCAGCACTTGGCTAGAAACGGAGTG
ACTGGGATGGGGTGGGGTCCACAGAGCTGTGTCTAGCTTATATAGCAAGC
CCAGGTTCAGTGAGACACTCTTTGCCAAAATGCATTGTTGAGTGATACTG
GTGTTTTGTATCCTTGTCTGTCCACTACTTGCCTAAATTGGCTCTTGCGC
C

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTCTAATGAGGTATGTATGT
GAGGATTTTTTTTAAAGTTTTTAAAAACCTGTGTGTGTACATAAATGCTC
TGTCTGTATGTTTGTCTGTACACCAGAAGAGGGCAGTAGATCCCATTATA
GATATTTGTGAGCTACCATGTAGTTGTTGGGAATTGAACTCAGGATTTCT
GGAAGAACAACCATTGCTCTTAACCCCTAAGCCATCTCTCCAGCCCCAGA
CTAAGACATTTAGAGTATTCTAGTAATATGTAAGATATCATTTGTGAACA
CAGATAATCTTCCCGATCTGAATGCCCTGGTTAGGTGTTCAGACCTTGAT
AAGAATGGCTGGAAGTCAACACCTTTCTCTTACTCTTGATTTTGGAGGAA
AGGCTGACTTTCATCCTTCATTCAGTCTGATGCTAGCTGTTTTTTTTTTG
TTTGTTTGTTTGTTTGTTTGAGTTTTTTTCCACAGCCTCTTACTGGATTG
TGGTAATTGTCTTACAGTACTTCTCCTATTTATTTATTGTTTTTTGGATT
TTTTTTTTTTACCACATATTCCGAGCTGTTTATCTTCTTTTCTTTTTTCC
TTTATTCATCCATTCTTCGCTTGTTTACTTTTTTTACTCTTTTCCCTCCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_i03.b1 MSMg01no047_i03.b1 CHROMAT_FILE:
MSMg01no047_i03.b1 PHD_FILE: MSMg01no047_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:52 2005
         (535 letters)



>mm_chr3_35728134_35729068
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcattggacttagtggattattgctattggcagtggttcagcaatgagtgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcattggacttagtggattattgctattggcagtggttcagcaatgagtgat 264

                                                                       
Query: 65  ttagtatttcatctactctgctctgtcactgttatggaagtgtgaggaccatgtgtagct 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtatttcatctactctgatctgtcactgttatggaagtgtgaggaccatgtgtagct 324

                                                                       
Query: 125 cctctgagggataaagttctagcttagaggagtcagccttgtccaggaagcgtcttcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctctgagggataaagttctagcttagaggagtcagccttgtccaggaagcgtcttcatg 384

                                                                       
Query: 185 gtgtgtatgatggctagacttgaggctggatcgttgtatgtcttaaaatcaacccctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgtatgatggctagacttgaggctggatcgttgtatgtcttaaaatcaacccctcct 444

                                                                       
Query: 245 ctttgggataataaatattaattttgaaacttcatccttctttgtggtttctaaactatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttgggataataaatattaattttgaaacttcatccttctttgtggtttctaaactatt 504

                                                                       
Query: 305 tccagtaaatctcaattgtaattttaaataactttatactaagaatataaaactgatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccagtaaatctcaattgtaattttaaataactttatactaagaatataaaactgatttg 564

                                                                       
Query: 365 ggggctgtggagatggcctgctaagtaacgcgatggctagacaggctgagcagataaggc 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 ggggctgtggagatggcctgctaagtgacgcgatggctagacaggctgagcagataaggc 624

                                                                       
Query: 425 caactttctagtacccgcataaaatccagccatagtgcaaatctataacccaagcagcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caactttctagtacccgcataaaatccagccatagtgcaaatctataacccaagcagcag 684

                                                              
Query: 485 cacttggctagaaacggagtgactgggatggggtggggtccacagagctgt 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacttggctagaaacggagtgactgggatggggtggggtccacagagctgt 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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