Query= MSMg01no047_m07.b1 MSMg01no047_m07.b1 CHROMAT_FILE:
MSMg01no047_m07.b1 PHD_FILE: MSMg01no047_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
(370 letters)
>mm_chr3_45800208_45800977
Length = 770
Score = 692 bits (358), Expect = 0.0
Identities = 364/366 (99%)
Strand = Plus / Plus
Query: 4 ggaattcattattttctcctcctcagttcattatttttacttctcaaaaatgtttgcaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattattttctcctcctcagttcattatttttacttctcaaaaatgtttgcaac 263
Query: 64 atattcacaaacaccagaaaacagcatccacagaaatttcttagaagtaaccagtaataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atattcacaaacaccagaaaacagcatccacagaaatttcttagaagtaaccagtaataa 323
Query: 124 agagtgacaaggaaaattgggatgctttcagctctaaagagccagacgccactgaagatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagtgacaaggaaaattgggatgctttcagctctaaagagccagacgccactgaagatg 383
Query: 184 ttctaaacgtcaagcaatttgtgttactttaccttagagggtacccggatgatggggaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ttctaaacgtcaagcaatttgtgttactttaccttagagggtacccggatggtggggaca 443
Query: 244 gatccacagttttttaacccaaaacaagcctcagggaaattgtacaattattatgctctt 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatccacagttttttaatccaaaacaagcctcagggaaattgtacaattattatgctctt 503
Query: 304 ctctgtctttgttcaagagtaatatggggttaaatttcttgtttcttgctgtaaatctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctgtctttgttcaagagtaatatggggttaaatttcttgtttcttgctgtaaatctct 563
Query: 364 tcacag 369
||||||
Sbjct: 564 tcacag 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_m07.g1 MSMg01no047_m07.g1 CHROMAT_FILE:
MSMg01no047_m07.g1 PHD_FILE: MSMg01no047_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
(287 letters)
>mm_chr3_45924197_45924883
Length = 687
Score = 534 bits (276), Expect = e-156
Identities = 285/290 (98%), Gaps = 4/290 (1%)
Strand = Plus / Minus
Query: 1 cttaggagtccaatctctctataaaattctagattagggcatttattatttctacttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttaggagtccaatctctctataaaattctagattagggcatttattatttctacttgaa 320
Query: 61 ccaaagctctttcaattgtatgacctatagtttgtattcaaaaagattcttcatatgtgt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 ccaaagctctttcaattgtatgacctatagtttgtattcaaaaagagtcttcatatgtgt 260
Query: 121 tattcaacatatttggcaaagttaaaagttacattaaatcaaacacacacacacacaca- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tattcaacatatttggcaaagttaaaagttacattaaatcaaacacacacacacacacac 200
Query: 180 ---gatagaaatataaatatagatagatatataaatatacatatatacaaatatatagat 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acagatagaaatataaatatagatagatatataaatatacatatatacaaatatatagat 140
Query: 237 attaggatatgtaggtatatagatatatgaagatttttaaagcatgaaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attaggatatgtaggtatatagatatatgaagatttttaaagcatgaaat 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
