BAC Information

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BAC

Clone NameMSMg01-048E03
Chromosome3 (Build37)
Map Location 113,293,663 - 113,294,129
singlet/doubletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1
Downstream geneRnpc3, Col11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E03.T7 (MSMg01no048_e03.b1)MSMg01-048E03.TJ (MSMg01no048_e03.g1)
ACCAG278069AG278070
length1,2151,246
length of high quality
(start - end)		776 (35 - 810)597 (80 - 676)
definitionCHROMAT_FILE: MSMg01no048_e03.b1 PHD_FILE: MSMg01no048_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:59 2005CHROMAT_FILE: MSMg01no048_e03.g1 PHD_FILE: MSMg01no048_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTGA
GGCAGGGTTTCCTTATAGTTATAGCTAATTTTTAAGAACAGCTAATCTTG
CTCCGGCAGCTGTGGTCATCATGATTTCTAGTCAGTCCTCTCAGATGGGG
AAGGGCCACCATGTGATATTGAACTATTGAACTTGTTTAAATTGGCAGGG
AAAGGGAAAATTCCTCAAGCAGCAGGTGGGAGGGGGAGAGAAAAGCTACT
GCAAACAGCTTTGGTGCCCATTAGCCAAGCTAAAAGCTGTATTCAGAGCA
TTCACTATGAAAAGCAGTAAGGAGAATTATCAAAAAGCCCAAAACTAATG
TAGTATATGACCTAGCTATACTACTACTTGGGTTTTTGGGTACATGCCCT
AAACATGACATCATATTCCATAATGCTCACCTACTCATGGTCATTGCTGC
TGTATCCAAAATAGCTAAATTTCTTTCAATAAGGAATGGATAATGAAAAT
GTAATTCATATACACTATGCAACACTATTAAGTTATAAGAAAAATGAAAT
AATGTATTTTGCAGGTAAATGTATGAAATCAGAAAAGATCACATTGTGTG
AGATAATCCAGACTCAGAAAGACGTGTCACATGTTCTATCAACTAGCTCC
AAATCGTTACAAGTAAATACATATACTGAGTCAACTGCAGAACCAGAAAG
TGAGACTAGTGCCAGGGTAGGTAGTTGTGGGTTCAATAGAGAGAGGAAAC
ACAGGATGTAAATGCTGATTGGATAAGTGGCTCTAATTAGGGAGGGGGAA
GGGAGACAGGAACAGGGAAAAGGTGAACACAACAACAAGAATATCTGAAA
AAGTAACATGGAAACATGCTATTGGCTATACTTTTTAAAAAGCCCTCTAA
TGTATGCCAGTCTGTGGATTATATCCACAGAGGTTAGAAGAAAATTTTCC
CTCGTGCTAATAAAGCTTCCCTCCAAAAACAAAGAACTGCTGGTTTTGTT
TTGTTTTGGTTTGTCTTGTCTTGTCTTTGCTTATCATCCGGCTTCCTATT
CACCTCGTGTTACATTATTTCTCCTCTTCTTTATTTTACCTTTTTTATTT
GCTTTTTATCTTCTTTTTCTATTAATTTTTTTCTTTTTATTATTCTAATC
CTTTTTTATACATCTATTATTATCTTTGCTATTTTTTTATTTTTTTTTCT
CTCTCTTTTCTTATT

TTNTTTAACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTTAATCTTTCCAAGGAATCAAGAACTTT
TGTCAAATGCTCTTTCAGCATCTAATGAAAGTATCATGGTTTTTTTTCTT
TGAGTTTATTTATGTAGTGGATTATGTTGATGGATTCCCATATATTGAGC
CATCCCTGCCTCCCTGGAATGAAGCCTACTTGATATTTGACCATGGTAAA
TAATCATTTTGATGTGTTCTTGGATTTGGTTGGCAAGAATTTTACTGAGT
ATTTTTGCATCAATGTTCATAAGGGAGATTGTTCTGAAGTTCTCTTTCTT
TGTTTGGTCTTTGGGTGATTTAGGTATAAGCTTAATTGTGGCTTTATGTA
ATGAATTGGGTCGAGACTCTAATCAAGCAAGTGAAAGATCTATATGACAA
GAGCGTCAAGACTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGGA
AAGATCTACCATGCTCATGGATTGGCAGAATTAATATAGTAAAAATGGCC
ATCTTGTGGAAAACAATCTACAGATTTAATGAATTCCCCATGATAATTCC
AACTAATTTCTTCATAGAGTTAGAAAGAACAATTGGCAAATTCATTTGGA
ACAACCAAAAAAAAAAAAAAACAACAACACCAAAACAAAAAACAGTATAC
CAAAAACTATTCTCAACAACTGGGAGAATCACCATACCTGACCTCATGCT
CTATTACACAGCATTAGTTATAAAAACAACATCACCTACAAAATCCTGCA
TGGTATTGGTACAATGATAGGCATGAAAATCAAGAAGACCTCTAAAAGAA
CCCACACACATATGGTCACTTGATCTCTATCTAAGAAGCTAAAACCATCT
ATTGGAAAAAATGTTTTCTCACAAATGGGGTTGGTTTCACCTGTCTTTTA
TATTTATGATATCGCAAATGACCCCTTCTTATTATTTGTATAAAGCTTAG
TTCTAGTTCATTTATTTCCTCCCTTTATCCTTGATCTTTTTAATTTGACT
TGTTTTTAAAGTCTTAATCTTTGTTTCTTGGTATAATTTTTTTAAATATT
ATCTTTGGTTTGTCCTTTTAATTTTTATTCTCTTTCATTATGTTGCCCTA
TATTATTGTCCTACTTTTTGTTATCCTATAATATTTTTTTAAATATTTAT
AATCCTCTCATACCCGTTTTAAATCTTTTCATCTCTATTTGTCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e03.b1 MSMg01no048_e03.b1 CHROMAT_FILE:
MSMg01no048_e03.b1 PHD_FILE: MSMg01no048_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:59 2005
         (776 letters)



>mm_chr3_113293663_113294839
          Length = 1177

 Score =  812 bits (420), Expect = 0.0
 Identities = 456/468 (97%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattc-aactgaggcagggtttcct-tatagttatagctaatttttaagaacagcta 60
           |||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 467 cggaattcaaactgaggcagggtttcctct-ttgttatagctaatttttaagaacagcta 409

                                                                       
Query: 61  atcttgctccggcagctgtggtcatcatgatttctagtcagtcctctcagatggggaagg 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atcttgctcctgcagctgtggtcatcatgatttctagtcagtcctctcagatggggaagg 349

                                                                       
Query: 121 gccaccatgtgatattgaactattgaacttgtttaaattggcagggaaagggaaaattcc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gccaccatgtggtattgaactattgaacttgtttaaattggcagggaaagggaaaattcc 289

                                                                       
Query: 181 tcaagcagcaggtgggagggggagagaaaagctactgcaaacagctttggtgcccattag 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 288 tcaagcagcaggtgggagggggagagaaaagcttctgcaaacagctttgttgcccattag 229

                                                                       
Query: 241 ccaagctaaaagctgtattcagagcattcactatgaaaagcagtaaggagaattatcaaa 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 228 ccaagctaaaagctgtattcagagcagtcactatgaaaagcagtaaggagaattatcaaa 169

                                                                       
Query: 301 aagcccaaaactaatgtagtatatgacctagctatactactacttgggtttttgggtaca 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gagcccaaaactaatgtagtatatgacctagctatactactacttgggtttttgggtaca 109

                                                                       
Query: 361 tgccctaaacatgacatcatattccataatgctcacctactcatggtcattgctgctgta 420
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 108 tgcccaaaacatgacatcatattccataatgctcaactactcatggtcattgctgctgta 49

                                                           
Query: 421 tccaaaatagctaaatttctttcaataaggaatggataatgaaaatgt 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tccaaaatagctaaatttctttcaataaggaatggataatgaaaatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1177
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1167
Effective search space:   893922
Effective search space used:   893922
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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