BAC Information

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BAC

Clone NameMSMg01-048F05
Chromosome3 (Build37)
Map Location 16,790,284 - 16,791,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F05.T7 (MSMg01no048_f05.b1)MSMg01-048F05.TJ (MSMg01no048_f05.g1)
ACCAG278120AG278121
length1,2491,233
length of high quality
(start - end)
728 (85 - 812)770 (76 - 845)
definitionCHROMAT_FILE: MSMg01no048_f05.b1 PHD_FILE: MSMg01no048_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:08 2005CHROMAT_FILE: MSMg01no048_f05.g1 PHD_FILE: MSMg01no048_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGGGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACTTTTCAGCTGGCCCTATAAAGTACCAGTGAGTACAGCTTTA
CAAGGTAAGTCTCTTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTAAACTTT
CTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTT
AAGGCAGGGCGGATTCTGGATGAATTTCAGGACAATCTATCAGAAGTAAA
GCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATGGTTCACAAAATAAGT
ATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGT
AATATTATCTGGGGAGAGATTAGAAGGAAGGAGAAAGAAAAAGAAAAGAA
AAAAAGATCAATTAGAGGAGCCAGTTCTTAGTAGTTCTGAATCAGATGAA
AAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGG
ACAATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCA
CCCTGGAGTTGTAGATCAAGATTATAAAGGGGAACTTCAGGTTCTCTGTT
CTTGTCCTCAAGTTGTCTTTTCTATATCACAAGGGGACAAAATAGCTCAG
CTAATAATTTTGCCAAGCCTACATGGCTGTTTTTTCTTCCTCTGGAATTC
CTAGAGCTGCCAGAGGGATTGGTTCTACTGAGAATGATTCTGATTACTTA
ATAATGCCTTTAGATTGTTGTCAAATTTTATCTACTCACGTTAGGGTAAA
CCCTTCTGGCGTCAGGGCATTATCCGTCTGAACAATGGAAGTCCCACATA
TTTCCTCCTTTGAGAGAAATCAATATTTACTTGTTTTAGATAACAGAGGA
CACCTCCTTACTTTAATGATTTTCAAAAGTTGTTTTAAAATATAATTTGG
TTCAAACCTTTTTTAAGATTCCTTTCCCTTAATTAAAGGCTTTTGTTTGT
TTTTTATAAAAATAACTTCCTTCTTCTTCCTCTAAAATTTTTCTTTAAAG
GTTTATTTTGTCTTTTATATATTCGAATTATCTCTTTTTATTGCTACTTA
CATCTTTTGTGCTATCTTAACCTCTTTTTTGTTGTGTTTTATTATAATTA
TTTCCTCTCCTCTTCTTTATTAATTAACTCTCTTGTCTGTATTATTCTC
NNNTTTATCAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTAAAATGTTAAAAATCTGTTTGAGAGAA
GTTGTGTGTATGGACTTAAACCTATGCTTGGTGTTCAACCCAGGCCTTCT
ACTACTATAAAATTAAGAGGGAAAATGAAAATATAAGCTCTGGAAATGTT
TACCATATGTCATGAGCTAGCAAGCATAATTATCCTATGTTCATATAATG
GCATACTCCCCAGAAATAAAATTGAATTGCTGGAACATGCACTAATACTC
ATCTGAGTATCAAAAGCATTGATCTAAGTGCAAAAGCCAGATACAAAAGA
GGGCATGAATTACAAATTTGTCTATATACCATTCAAAGAGATTAAGTTTG
TTCCTCAAGTACATTTATTGATATGAAATGTATTTCACATGCTAACTGCA
AAATACAACTGTTCTACAAAGTACATGCTGTCGCCCTTCAAGTACAGCCA
TTACTCTTTCCTGCATACACCATGTTTGATATTTGTCTCACTATACATTG
AACTCAGTATGCCTACCTAGTTGTCTGTGTTGCAGATATGCTCCTGTCTG
CACCTACTTAATGAAACCAATACATTTTTGTCTATTTTATTTTCTAGGTA
TAATAACATGAATTAATATGAAAAGGACAAGAGAGACAATTTAAGGATGC
TTCATAGATTTTTAACATAAAAAGAGTTTAGTCAATACCATATGCAGCTT
TTGTAGAGTTTTCTTAACTATTTAATTTTACATATTTCTCTTTCTTTCTC
CTCCCCTTCTTTATAATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGAAAA
ACACACATCTTTTCTTATTCTTGTTTTACCTTATCACATTTTCTCCATTG
CTTTGATAATCTTTTCCCCCTCTTACCCTTATCCTTTCTGTTTCTTATTT
CCTATTTTTCTATCTTCTTTTTTGTGTGTGGGTTCTTGCTAACTTTTTTA
TTTATAAATTTTTTCCAAGTATGTTTTTAAATTCTTTCTTTTCTTTTTCT
CTCTTTCTTTTTATCTTTCTTCCTATATAATATATTTTTAGTTCTTTTTT
CCTATTAGTGGTTTTTACTCTCTTTATATTTTTTTTACTTACTATCTTAT
GTTGCTATTTATCCCTTCTATCTATAAATGTTCTTTATTTTCTTTAGTCT
TTGACTCTTTTCTTGAGTAACTTTTTTATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f05.g1 MSMg01no048_f05.g1 CHROMAT_FILE:
MSMg01no048_f05.g1 PHD_FILE: MSMg01no048_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:08 2005
         (770 letters)



>mm_chr3_16789838_16791007
          Length = 1170

 Score = 1353 bits (700), Expect = 0.0
 Identities = 718/724 (99%)
 Strand = Plus / Minus

                                                                        
Query: 47   ctatgcttggtgttcaacccaggccttctactactataaaattaagagggaaaatgaaaa 106
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 ctatgtttggtgttcaacccaggccttctactactataaaattaagagggaaaatgaaaa 1111

                                                                        
Query: 107  tataagctctggaaatgtttaccatatgtcatgagctagcaagcataattatcctatgtt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tataagctctggaaatgtttaccatatgtcatgagctagcaagcataattatcctatgtt 1051

                                                                        
Query: 167  catataatggcatactccccagaaataaaattgaattgctggaacatgcactaatactca 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 catataatggcatactccccagaaataaaattgaattgctggaacatgcactaatactca 991

                                                                        
Query: 227  tctgagtatcaaaagcattgatctaagtgcaaaagccagatacaaaagagggcatgaatt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  tctgagtatcaaaagcattgatctaagtgcaaaagccagatacaaaagagggcatgaatt 931

                                                                        
Query: 287  acaaatttgtctatataccattcaaagagattaagtttgttcctcaagtacatttattga 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  acaaatttgtctatataccattcaaagagattaagtttgttcctcaagtacatttattga 871

                                                                        
Query: 347  tatgaaatgtatttcacatgctaactgcaaaatacaactgttctacaaagtacatgctgt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  tatgaaatgtatttcacatgctaactgcaaaatacaactgttctacaaagtacatgctgt 811

                                                                        
Query: 407  cgcccttcaagtacagccattactctttcctgcatacaccatgtttgatatttgtctcac 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  cgcccttcaagtacagccattactctttcctgcatacaccatgtttgatatttgtctcac 751

                                                                        
Query: 467  tatacattgaactcagtatgcctacctagttgtctgtgttgcagatatgctcctgtctgc 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  tatacattgaactcagtatgcctacctagttgtctgtgttgcagatatgctcctgtctgc 691

                                                                        
Query: 527  acctacttaatgaaaccaatacatttttgtctattttattttctaggtataataacatga 586
            |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 690  atatacttaatgaaaccaatacatttttgtctactttattttctaggtataataacatga 631

                                                                        
Query: 587  attaatatgaaaaggacaagagagacaatttaaggatgcttcatagatttttaacataaa 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  attaatatgaaaaggacaagagagacaatttaaggatgcttcatagatttttaacataaa 571

                                                                        
Query: 647  aagagtttagtcaataccatatgcagcttttgtagagttttcttaactatttaattttac 706
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  aagagtttagtcaataacatatgcagcttttgtagagttttcttaactatttaattttac 511

                                                                        
Query: 707  atatttctctttctttctcctccccttctttataatgtgcgtgtgtgtgtgtgtgtgtgt 766
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 510  atatttctctttctttctcctccccttctttataatgtgtgtgtgtgtgtgtgtgtgtgt 451

                
Query: 767  gtgt 770
            ||||
Sbjct: 450  gtgt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 770
Length of database: 1170
Length adjustment: 10
Effective length of query: 760
Effective length of database: 1160
Effective search space:   881600
Effective search space used:   881600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)