Query= MSMg01no048_f13.b1 MSMg01no048_f13.b1 CHROMAT_FILE:
MSMg01no048_f13.b1 PHD_FILE: MSMg01no048_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:10 2005
(818 letters)
>mm_chr3_155755004_155756221
Length = 1218
Score = 1471 bits (761), Expect = 0.0
Identities = 798/813 (98%), Gaps = 6/813 (0%)
Strand = Plus / Minus
Query: 1 ctccagagccatcttgaaaattccagacttggttccagtccaacttatctaaactctaga 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 808 ctccagagccatcttgaaaattccagacttggttaaagtccaacttatctaaactctaga 749
Query: 61 gaagatacttagctgctatacaaccccttgccttttcctatgaaacttcctctattccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaagatacttagctgctatacaaccccttgccttttcctatgaaacttcctctattccat 689
Query: 121 ctccccatcattcccacgtggaccagagcccttccttgtcctttcaccattattgcttct 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 688 ctccccatcattcccacgtggaccagagcccttccttgtcctttcaccgttattgcatct 629
Query: 181 gcgttcttttggtaagtatatagaactgacttgcaatccccacactacagcttcttacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcgttcttttggtaagtatatagaactgacttgcaatccccacactacagcttcttacct 569
Query: 241 atgattctgactgcagttttaactcagaaactttatgtgcttagtgggaaatactagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgattctgactgcagttttaactcagaaactttatgtgcttagtgggaaatactagttt 509
Query: 301 tctgtgataagatatctgatctttttgctttgatccttctattctgtgacttgattgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctgtgataagatatctgatctttttgctttgatccttctattctgtgacttgattgcaa 449
Query: 361 gaagatgtaatacaatctgatcctaggatgctgtagtgttttcttgggtttctctttctc 420
||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 448 gaatatgtaatacaatctgatcctaggatgctatagtgttttcttaggtttctctttctc 389
Query: 421 tgtttcaccagtgtttattatcacatgctatacagttagaaaaactgctcatgatgtctt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtttcacaagtgtttattatcacatgctatacagttagaaaaactgctcatgatgtctt 329
Query: 481 atggcaatactgctttctcctttggtactaaaacatagataatggttacaaataccaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atggcaatactgctttctcctttggtactaaaacatagataatggttacaaataccaacc 269
Query: 541 ttgttaccatcaatattaatttaggaaaccattgttatttacaaagactacataattcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgttaccatcaatattaatttaggaaaccattgttatttacaaagactacataattcta 209
Query: 601 atacttgaaataataataataataataataataataataataataataataataataaaa 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atacttgaaataataat-----taataataataataataataataataataataataaaa 154
Query: 661 gcctgtattgatttccagttatttcta-tttttttaattttaccattgtattaaaaataa 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 153 gcctgtattgatttccagttatttctattttttttaattttaccattgtattaaaaataa 94
Query: 720 attattttctcatactctatatctcagttaccgtcctcctctgcttctctcagtttctta 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 attattttctcatacactatatctcagttaccgtcctcctctgcttctctcagtttctta 34
Query: 780 ctacctccccttctcaccaaatttgctccttct 812
|||||||||||||||||||||||||||||||||
Sbjct: 33 ctacctccccttctcaccaaatttgctccttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 818
Length of database: 1218
Length adjustment: 10
Effective length of query: 808
Effective length of database: 1208
Effective search space: 976064
Effective search space used: 976064
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_f13.g1 MSMg01no048_f13.g1 CHROMAT_FILE:
MSMg01no048_f13.g1 PHD_FILE: MSMg01no048_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:10 2005
(759 letters)
>mm_chr3_155733343_155734500
Length = 1158
Score = 1431 bits (740), Expect = 0.0
Identities = 754/759 (99%), Gaps = 1/759 (0%)
Strand = Plus / Plus
Query: 1 tgcggaaaagtacaggtagagaaatacaagctacagcctgcgaagtattttctggctgaa 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcggaaaagtacaggtat-gaaatacaagctacagcctgcgaagtattttctggctgaa 259
Query: 61 agaaatgagaaggctctaatggcggaaagcatcttgtaagaaaaatcacctatgtttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaaatgagaaggctctaatggcggaaagcatcttgtaagaaaaatcacctatgtttcaa 319
Query: 121 taacgtttaaagtagatcttcagtagtttccagaggtgaacagtcttctggttggactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taacgtttaaagtagatcttcagtagtttccagaggtgaacagtcttctggttggactac 379
Query: 181 actacgtttgtgaagccaatcttaggccacacatttccatttctcctgtctactaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actacgtttgtgaagccaatcttaggccacacatttccatttctcctgtctactaaaatg 439
Query: 241 tagaagctaatattcattggtcaacttcgatgctggaaaattagtttcaaaaaccaaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaagctaatattcattggtcaacttcgatgctggaaaattagtttcaaaaaccaaggc 499
Query: 301 ttctatattttaatttcaaaaaaatattattagtgccaccagctagggcaataatggcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctatattttaatttcaaaaaaatattattagtgccaccagctagggcaataatggcca 559
Query: 361 catcttcatgtttagcctttactatcacaatgcacctcaaacacatggtcattttttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catcttcatgtttagcctttactatcacaatgcacctcaaacacatggtcattttttttc 619
Query: 421 ctgtaagctaaaaaactgttcatccaaccttgtgataccaaggacttcaaaatataatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgtaagctaaaaaactgttcatccaaccttgtgataccaaggacttcaaaatataatgt 679
Query: 481 aagaagtgcatatgcatacttaaaactgaaactacaaggggttanaagcaattcaaaata 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 aagaagtgcatatgcatacttaaaactgaaactacaaggggttagaagcaattcaaaata 739
Query: 541 tctcatatgtaatatgtgacttacagccaggcagaaatgtgagcattgtaggcactgtat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctcatatgtaatatgtgacttacagccaggcagaaatgtgagcattgtaggcactgtat 799
Query: 601 attggaaggaagatggaatcgttggaggttgtagaagagaggaaatcgttcccaaggatc 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttggaaggaagatggaatcgttggaggttgtagaagagaggaaatcgttcccaaggatc 859
Query: 661 caatttgaagagaatcaatgaggagcccagtaccatggaacataaactgtacgttgtatg 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 860 caatttgaagagaatcaatgaggagcccagtaccatggaacataaactgtgcgttgtatg 919
Query: 721 aggtctggtaaaatgttgactttttttccctatagaata 759
|||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aggtctggtaaaatgttgactttttttccctatagaata 958
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1158
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1148
Effective search space: 859852
Effective search space used: 859852
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
