BAC Information

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BAC

Clone NameMSMg01-048H23
Chromosome3 (Build37)
Map Location 70,326,373 - 70,422,124
singlet/doubletdoublet
Overlap geneLOC670542
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048H23.T7 (MSMg01no048_h23.b1)MSMg01-048H23.TJ (MSMg01no048_h23.g1)
ACCAG278248AG278249
length1,1841,180
length of high quality
(start - end)		511 (75 - 585)760 (77 - 836)
definitionCHROMAT_FILE: MSMg01no048_h23.b1 PHD_FILE: MSMg01no048_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:30 2005CHROMAT_FILE: MSMg01no048_h23.g1 PHD_FILE: MSMg01no048_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,326,373 - 70,326,851)(70,421,396 - 70,422,124)
sequence
NNNTACTATGGGCCTATAGACTCCTTAGGGAGAGGATCCGCGGAATTCTT
TGAGAATAATGTATCCTGTTAAGATCCACCCATGTATTGCTACTCCTAAC
TGCCTCCTTATCCATACTCAGGCTGTAATTACCTAGAAGTTTATAGGCAG
ATACTAGAAGATAAATTATAAGTCATGATCTGGACATATGTAAATCTCCT
TGGGAACGCTGGGCTTGATTCATTTCTGGTATCAACTTACAGATCTAATT
ATAAACATTCATTATGTTTCCCTCATCATGACTATCATGTCTATTATTTC
TATGAGTTTCTCATGTTTTTGGAAGTTTTGTGAGCAGAGGCACATCCTGT
CTTCATTACATGTGTTTTAGGGGGGTTGTATGTGTTTCTTGGTATGTTTA
ATGCCTTCTTGGAAGCAGTGGGCAGATCTGTTTTTAGTAAAGTATCATAA
AGATGATGTGTTTGTGTAGGGTAAGGGCGAGATGAGTTTGCTTGCTGCAT
ATACATTCTGAGTGTAATAAAGTATGTGTGTATGTATGTGTGTGTTTATT
CAGGCATGACATCCTCTTTGCTTTCTACAGCTCTCANAACCAATACTGAA
TGGGTGTGTGTGTGTTCTCTGTGTTATTTGTTGTGTATTCTTGTATTGTT
TTCTGTTTATACTTGACTCTACTTGTGAATTTTATCTATCTTCTTTTGTT
TACCTATGTTTGATTTTTTTTTTTCTTTCTTCTTTTGATATTTTATTCAT
CTGTTTATTCCTGTTTTTCTTTGTTCTTTTTTCTGTTTTCTCTTTTTACC
TTCTTATTTTTTTTTTTATTACTTTTTTTCTTTTTCTTTTTTTTCTTTTT
TTTCTCTTTTTTCTTTTTTTTTCTTTTTTTTTATTTTTCTTTTTTCTTCT
TTCTTTCTTTTTTTTTTTTTTTTTTTTTTTATTTTTATTTTATTTCTTTT
TTTTTTATTTTCCTATTTAATTATTTTTTTTCTTTTTTTCTTTATTTTTT
ATCTTCTTTTTCTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCC
TTTTCTCTTTTTTTCTTCTTTCTTCTATTTTTATCTTTTTCTTTTCTTTC
TCTTTTTTATTTTTCTTTTTTCTTTTATCTTCTTTCTTCTTTCTCTTTAC
TTCCTTTTTTTTTTTTTCCTCTCTTACTTTTTTG

NNNTTTACATGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCTTAAATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATTTATCTATCTATCTATTTATCTATCTATC
TATCTATCTACTGTCTATATCCATCATTATCTAGCTATCAAGTAGCTATC
TAGTAGCTATTTGTAGTTATTATCTATTGATCTATCAGCTATCTATATAT
TATCTACTGATCTATCATATATTTACATCACGTATGTGAATTAGTTTTAA
ATTTTAGATTAAAAATAATAAAAATAATGAGGAAACAATCATGGTCTACA
AAATTTTATGAGTCTCCACTAAAAGTTTTAATATGTCTCACATTTTAAAC
ATTATCTGAATGGAAACAATGGAAAATAATACACGCTTTCTATCTTTCTA
TATTTATATACAGTCATTACACTTTCATAAAATTATTTATAATATATGTG
GGAATTATTTCTACATTAGTCATTTCATGTTATTAATTAAAGTACTACCT
ACAAAATGTTCTCAGAAGGAGGATTATTTTACCTTCAGGCAAGGTACTAC
ACACTATGATTACTATTAATAGCAGGAGATCATGTGACAACATTCTAACC
CAGTTCATGCAGGCTCTACAATTATGGCAATGAGCAGCTTATTTATATAA
AAATATTTTACAGAAATCCATCTTCTGTCATGTTTCACTTAGTTTGAAAC
AGGCATATGCTAAAGTATTCCCCATTGCCTTTTTATCATACAAACAGTAA
ACTGTTCAAAGCTCAGAGGAATGGAACAAACAGCCTGTTTATGGAGTTTC
ATCAGAACAGTTAGAGACAACACAAGTTAGTTAATTCATCAGTTTCATTT
GTCTGAGTAATTAACGCTACCTTTGAAACTCATCAAAAGATTTTTGAAGG
TTAAATGAAGTGGCTTGAGGAACAGAATTGAACATTTTGGTTTTATTGAA
AAAGGNAACATTGACACCAAAAGCATCCCCAGTTTGAACCCTTAATTTTG
GAATATGACCCAATTGTGCTGTGCTGCCCCGGTTTTGAACCATGGGAAAC
AATTTTTCGGGGGCAAAAAATATAATTTTTACCTTTCCGGGTTTATTGGC
GTCTCACACCTTATTTTTTTTGGTCCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_h23.b1 MSMg01no048_h23.b1 CHROMAT_FILE:
MSMg01no048_h23.b1 PHD_FILE: MSMg01no048_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:30 2005
         (511 letters)



>mm_chr3_70326170_70327080
          Length = 911

 Score =  833 bits (431), Expect = 0.0
 Identities = 467/479 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   acccatgtattgctactcctaactgcctccttatccatactcaggctgtaattacctaga 63
           ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||
Sbjct: 204 acccatgtattgctactcctaactgcctccagatccatactcaggatgtaattacctaga 263

                                                                       
Query: 64  agtttataggcagatactagaagataaattataagtcatgatctggacatatgtaaatct 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 264 agtttataggcagatactagaagataaattataagtcacgatctggacatatgtaaaact 323

                                                                       
Query: 124 ccttgggaacgctgggcttgattcatttctggtatcaacttacagatctaattataaaca 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttgggaacgctgggcttgattcatttctggtatcaacttacagatctaattataaaca 383

                                                                       
Query: 184 ttcattatgtttccctcatcatgactatcatgtctattatttctatgagtttctcatgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcattatgtttccctcatcatgactatcatgtctattatttctatgagtttctcatgtt 443

                                                                       
Query: 244 tttggaagttttgtgagcagaggcacatcctgtcttcattacatgtgttttaggggggtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 tttggaagttttgtgagcagaggcacatcctgtcttcattacatgtgttttagggggttt 503

                                                                       
Query: 304 gtatgtgtttcttggtatgtttaatgccttcttggaagcagtgggcagatctgtttttag 363
           ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 gtatgggtttcttggtatgttcaatgccttcttggaagcagtgggtagatctgtttttag 563

                                                                       
Query: 364 taaagtatcataaagatgatgtgtttgtgtagggtaagggcgagatgagtttgcttgctg 423
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 taaagtttcataaagatgatgtgtttttgtagggtaagggcgagatgagtttgcttgctg 623

                                                                      
Query: 424 catatacattctgagtgtaataaagtatgtgtgtatgtatgtgtgtgtttattcaggca 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catatacattctgagtgtaataaagtatgtgtgtatgtatgtgtgtgtttattcaggca 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no048_h23.g1 MSMg01no048_h23.g1 CHROMAT_FILE:
MSMg01no048_h23.g1 PHD_FILE: MSMg01no048_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:30 2005
         (760 letters)



>mm_chr3_70421304_70422463
          Length = 1160

 Score = 1363 bits (705), Expect = 0.0
 Identities = 723/729 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  atctatctatctatttatctatctatctatttatctatctatctatctatctactgtcta 91
           |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 821 atctatctatctatctatctatctatctatctatctatctatctatctatctcctgtcta 762

                                                                       
Query: 92  tatccatcattatctagctatcaagtagctatctagtagctatttgtagttattatctat 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tatccatcattatctagctatcaagtagctatctagtagctatttgtagttattatctat 702

                                                                       
Query: 152 tgatctatcagctatctatatattatctactgatctatcatatatttacatcacgtatgt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgatctatcagctatctatatattatctactgatctatcatatatttacatcacgtatgt 642

                                                                       
Query: 212 gaattagttttaaattttagattaaaaataataaaaataatgaggaaacaatcatggtct 271
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 641 gaattagttttaaattttagattaaaaataataaaaataatgaggaaacaattatggtct 582

                                                                       
Query: 272 acaaaattttatgagtctccactaaaagttttaatatgtctcacattttaaacattatct 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acaaaattttatgagtctccactaaaagttttaatatgtctcacattttaaacattatct 522

                                                                       
Query: 332 gaatggaaacaatggaaaataatacacgctttctatctttctatatttatatacagtcat 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaatggaaacaatggaaaataatacacgctttctatctttctatatttatatacagtcat 462

                                                                       
Query: 392 tacactttcataaaattatttataatatatgtgggaattatttctacattagtcatttca 451
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tacactttcataaaattatttctaatatatgtgggaattatttctacattagtcatttca 402

                                                                       
Query: 452 tgttattaattaaagtactacctacaaaatgttctcagaaggaggattattttaccttca 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgttattaattaaagtactacctacaaaatgttctcagaaggaggattattttaccttca 342

                                                                       
Query: 512 ggcaaggtactacacactatgattactattaatagcaggagatcatgtgacaacattcta 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggcaaggtactacacactatgattactattaatagcaggagatcatgtgacaacattcta 282

                                                                       
Query: 572 acccagttcatgcaggctctacaattatggcaatgagcagcttatttatataaaaatatt 631
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 281 acccagttcatgcaggctctacaattatggcattgagcagcttatttatataaaaatatt 222

                                                                       
Query: 632 ttacagaaatccatcttctgtcatgtttcacttagtttgaaacaggcatatgctaaagta 691
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttacagaaatccatcttctgtcatgtttcacttagtttgaaacaggcatatgctaaagta 162

                                                                       
Query: 692 ttccccattgcctttttatcatacaaacagtaaactgttcaaagctcagaggaatggaac 751
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttccccattgcctttttatcatacaaacagtaaactgttcaaagctcagaggaatggaac 102

                    
Query: 752 aaacagcct 760
           |||||||||
Sbjct: 101 aaacagcct 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space:   862500
Effective search space used:   862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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