BAC Information

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BAC

Clone NameMSMg01-048J06
Chromosome3 (Build37)
Map Location 34,513,846 - 34,514,549
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074
Downstream geneSox2, LOC100041108, LOC665655, Ube2l3-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048J06.T7 (MSMg01no048_j06.b1)MSMg01-048J06.TJ (MSMg01no048_j06.g1)
ACCAG278310AG278311
length1,2511,225
length of high quality
(start - end)
679 (80 - 758)662 (85 - 746)
definitionCHROMAT_FILE: MSMg01no048_j06.b1 PHD_FILE: MSMg01no048_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:41 2005CHROMAT_FILE: MSMg01no048_j06.g1 PHD_FILE: MSMg01no048_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
CAGCAGTTGTGACAGCCTTTAAGCGCCAGATCTATGCAAGCCCAAGCCAG
GAAAAATCCCAGTAGATTGGGAAACGGGCAAGAAGTCCCACCCATAGCTG
AGGAGCTATGAAAAATTAATTACTGCTGGAAGAGAAATAATCAGTTTTCT
TTAAAGGTGTGAGCTCTGGCAGGTTGACCACTCTCCACAGAGAGGTCATA
ACCCCAAGAATATATGAGAACCACAAACTGGGCTTGGAGGATGAAGAAGA
AGGAGGAGGAAGAAGAGGAAGAGGAAAACACAAAGTTGGATAGTGTCTTA
GTTACTTAGTTACTTTTCTATGGCCAGGACAAAACACCATGACCAAGGCT
TCTTAGAAAAGAAAGCATTTAAATGGGAGCTTAAAGCTCCAGAGAGTGAA
TCTATACTATGACCATCATGTCAGGGAGCATGGTGGCAGGCATGGTATTG
GAGCAGTAGCTGAGAGCTTACATATGACCCACCAGCAGACGGCAAAGAGA
TAGTTAACTGGGAATGGCATGGTCCTTAGAAATCTTACTCCCCCCAATTC
TTACTCCCCCGCCCCCCACTCCTACAGTGAGGCATTTCCTCCAAACCAGG
CCACACCTCCTAATCTTTCCCAAACAGTTCCACTAACTGAGGACCAAATA
TTCAAATATATGAGGGTCATTCTCATTCAAACAAACAAACAGGGAAGTCA
GGGTAGCTCTGGGAGGAGTTGTGGGGGGATGAATATCTGGCTCAAAATTC
TTAATTATTTCTACTATGTGTTTTAACAGTAATATTCTGATTATCTTACT
GCCATTTTTTTCTTTTACCATCTTTTTTTATCCTTTTTTACACAATTTAC
TTTTTTTCTCACTTTCATTTTTCTCTAATTTTTCTCTATCTCTTTATTTT
ACTTTGTCTGCTCTTCCTTCCTCTAATTCTCTACCTTCTTTATAGTTTTC
TTTCTTTGGTCCCCTTTTTCTCTCCTTACATCCTCTTAATTTTACTATTA
TCCTTTTTTTTCCATTTTCCTTGCACTTGATTCTTTCATTTCTTTTTCTT
CTTATTAACTTTTTTTCATTACTTTTTTTCACTCTCTATTCCTCTTCTTC
TTCTCTCCTTACCTCTTCTATTTATCTCTTCTCCTCTTATCTATATATCT
TCTTCTTTCTCTTCCTTTTATATCTATTTTTTCTTCCTACTTACTACTAC
T
TTTTNNAACGGAGTGTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTTAATGCCATAAGTCGGCGACGCACAG
TTGCTTCAAATTGTAACTGCCTCTCTGACAGTGGAAAGAAACGGTGGCTG
TAAGCAGTTGGGGTGGCGGTCACCTGTCATCCTCACACTGGGAAGTTTGA
GGCAGGGGATCAAGAGTTCAAGGGTGACCTGCGCTTTATGAGAGAGTCTC
TTAACTTAAAAAATAAATAAATAGATAAAAACATAAAAAATGAATAAAAA
GGGAAACGCCAAAGAAAGCGTCATGATATGCACAGAACAAGGCCAGCTCC
CTTTTCTATGTGTTGTTTGAAAGTCTAAAACACATTGAAAAATCTCTCTT
TGATTCAACCCAGGTTTTTCAAGTCTATGTTGTTCCTCCACAGGCCTAGT
GAGGGGAAAACTTGTGCGTACCTGCTAAGTGCACTGCACAGCAACTGTTT
ATAAAAATTCTGGAAATAAAGCTAGAAATGTACTTTATTTATTCAACTCT
GAGCATGGAGAATAGTCGGGTTAGACCTCTCTCTCTCTCTCTCTCTCTCT
TTCTTGTTTTCCTTCTTGTGCTATCAGGACTGAATGATGGTACTCTGCCC
TCAGCCCTTTTTACACTTCTTGAGACTATCACTATGTTGCCCAGGTTGGC
CTTGAACTCATGATGGTCCTTCTATCCTGGCGTCTGAAGTAACTGGAATT
CCACGTCTGTACTGCGGGGTCAGCTCACGACCCTGGTGGTGTTTTTGTGA
CTGACTGGCTCTTCATCCACGAATACTTCAGGCTCCTCAGGAAGCGGACC
TCCAGCACATCTTCCCGTGAGTCGCCAGACATCTGTGCGTCGACTTCAGC
CGTTTTCAACCTCTCCCCAAGCTGCTCTCTCATCTTCTAGCTGTAATCTC
TTCTCATCAAAACATTTTGGCTTCTTGAGCTCGACTTTCCTTATTACTAA
CGAACCTTCTGATGCTGAAATTGTTTCTCCAGATTTCCTCTTTTTGTTTC
TAACCCCCCATAATTTGAACTCCTTTTTTATTTCCCTTTCTTATATATTT
TCTTGGTTTATTTTTCTAAACTTTTACTGTATTTGTTTACCTCTTATTCA
CATTCTTCTCTTTGTCAGTTCTTTTTCATATTGTCGTATCATTCTCTCAT
ATGTATTACCCTTCTCTTAACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_j06.g1 MSMg01no048_j06.g1 CHROMAT_FILE:
MSMg01no048_j06.g1 PHD_FILE: MSMg01no048_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:41 2005
         (662 letters)



>mm_chr3_34513679_34514740
          Length = 1062

 Score = 1172 bits (606), Expect = 0.0
 Identities = 660/704 (93%), Gaps = 42/704 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcggcgacgcacagttgcttcaaattgtaactgcctctctgacagtggaaagaaacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 agtcggcgacgcacagttgcttcaaattgtaactgcctctctgacagtggaaagaaacgg 812

                                                                       
Query: 61  tggctgtaagcagttggggtggcggtcacctgtcatcctcacactgggaagtttgaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tggctgtaagcagttggggtggcggtcacctgtcatcctcacactgggaagtttgaggca 752

                                                                       
Query: 121 ggggatcaagagttcaagggtgacctgcgctttatgagagagtctcttaacttaaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggggatcaagagttcaagggtgacctgcgctttatgagagagtctcttaacttaaaaaat 692

                                                                       
Query: 181 aaataaatagataaaaacataaaaaatgaataaaaagggaaacgccaaagaaagcgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaataaatagataaaaacataaaaaatgaataaaaagggaaacgccaaagaaagcgtcat 632

                                                                       
Query: 241 gatatgcacagaacaaggccagctcccttttctatgtgttgtttgaaagtctaaaacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gatatgcacagaacaaggccagctcccttttctatgtgttgtttgaaagtctaaaacaca 572

                                                                       
Query: 301 ttgaaaaatctctctttgattcaacccaggtttttcaagtctatgttgttcctccacagg 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgaaaaatctctttttgattcaacccaggtttttcaagtctatgttgttcctccacagg 512

                                                                       
Query: 361 cctagtgaggggaaaacttgtgcgtacctgctaagtgcactgcacagcaactgtttataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cctagtgaggggaaaacttgtgcgtacctgctaagtgcactgcacagcaactgtttataa 452

                                                                       
Query: 421 aaattctggaaataaagctagaaatgtactttatttattcaactctgagcatggagaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaattctggaaataaagctagaaatgtactttatttattcaactctgagcatggagaata 392

                                                                       
Query: 481 gtcgggttagacctctctctctctct--ctctctctct-t-------------------- 517
           ||||||||||||||||||||||||||  |||||||||| |                    
Sbjct: 391 gtcgggttagacctctctctctctctttctctctctctctctctctctctctctctctct 332

                                                                       
Query: 518 -------------------tcttgttttccttcttgtgctatcaggactgaatgatggta 558
                              ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331 ctctctctctctctctctctcttgttttccttcttgtggtatcaggactgaatgatggta 272

                                                                       
Query: 559 ctctgccctcagccctttttacacttcttgagactatcactatgttgcccaggttggcct 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctctgccctcagccctttttacacttcttgagactatcactatgttgcccaggttggcct 212

                                                       
Query: 619 tgaactcatgatggtccttctatcctggcgtctgaagtaactgg 662
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgaactcatgatggtccttctatcctggcgtctgaagtaactgg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)