Query= MSMg01no048_l13.b1 MSMg01no048_l13.b1 CHROMAT_FILE:
MSMg01no048_l13.b1 PHD_FILE: MSMg01no048_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:59 2005
(609 letters)
>mm_chr3_100394524_100395533
Length = 1010
Score = 1073 bits (555), Expect = 0.0
Identities = 601/624 (96%), Gaps = 15/624 (2%)
Strand = Plus / Plus
Query: 1 tactcatttacaattggtcagaaagtcagtaatttttattgttgttttgagacaggattt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tactcatttacaattggtcagaaagtcagtaatttttattcttgttttgagacaggattt 260
Query: 61 gtctgtgtagccctggctatcctagaactaactctgtagaccaggctggcctcaaactta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gtctgtgtagccctggctatcctagaactgactctgtagaccaggctggcctcaaactta 320
Query: 121 cagaggtccacctgcttctgtggaatactggggttaaaggtgtatgctatcactgtccag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cagaggtccacctgcttctgtggaatactggggttaaaggtgtatggtatcactgtccag 380
Query: 181 ctatcagtaatttattaaataaataagatttttctattttgtaattttttcctagaaatt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatcagtaatttattaaaaaaataagatttttctattttgtaattttttcctagaaatt 440
Query: 241 ttcatagaattaactctacattttaagctgtcatacatatttactaaacaatgtaatgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatagaattaactctacattttaagctgtcatacatatttactaaacaatgtaatgcc 500
Query: 301 atgataaagacaggctctgtaggccaacagctcagtttccgactctcaccttcaccaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgataaagacaggctctgtaggccaacagctcagtttccgactctcaccttcaccaagc 560
Query: 361 tacctgaccattgacactgcatcttcaagtctccatgtgtacagtcgtaacggtgaccca 420
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 561 tacctgaccattgacactgcatcttcaggtctccatgtgtacagtcataacggtgaccca 620
Query: 421 gtgacatcattcatgtaaataggctcatgtgatgcctggcacaggaaagcactatacaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgacatcattcatgtaaataggctcatgtgatgcctggcacaggaaagcactatacaag 680
Query: 481 tggctactgttacaattcagttttgggtttttttt-gttttttgttttt----gttttt- 534
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 681 tggctactgttacaattcagttttgggtttttttttgttttttgtttttttttgtttttt 740
Query: 535 ---gtttttttt------ccagacaggntttctctgtgtagccttggctgtcctgaaagg 585
||||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 741 tttgttttttttttttttccagacagggtttctctgtgtagccttggctgtcctggaagg 800
Query: 586 caccctgtagaccaggctggcctc 609
||||||||||||||||||||||||
Sbjct: 801 caccctgtagaccaggctggcctc 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_l13.g1 MSMg01no048_l13.g1 CHROMAT_FILE:
MSMg01no048_l13.g1 PHD_FILE: MSMg01no048_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:59 2005
(690 letters)
>mm_chr3_100414449_100415538
Length = 1090
Score = 1321 bits (683), Expect = 0.0
Identities = 688/690 (99%)
Strand = Plus / Minus
Query: 1 tgtttttctccacaaagtaaatttaaatgactttgcaatatattcatcatcagcagttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tgtttttctccacaaagtaaatttaaatgactttgcaatatattcatcatcagcagttat 831
Query: 61 taattttgagaatgctacagaaagtgctattcattgggagttttggcaggcagattttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 taattttgagaatgctacagaaagtgctattcattgggagttttggcaggcagattttca 771
Query: 121 aaccttagcaagttgcccttatatcccatttgcagctgcaatcctactaaattgtctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aaccttagcaagttgcccttatatcccatttgcagctgcaatcctactaaattgtctgat 711
Query: 181 ttgttctttcttgtgtttttgtatgttttatatcagctctggaacgtgtatcaaattcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttgttctttcttgtgtttttgtatgttttatatcagctctggaacgtgtatcaaattcca 651
Query: 241 tcattatcttggagcagtatacatctgtcatatctataaataggctgcaaaacaaacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcattatcttggagcagtatacatctgtcatatctataaataggctgcaaaacaaacatt 591
Query: 301 taattgaactgaaagttaaccattcagctttggctaactgtattataattagagtgatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 taattgaactgaaagttaaccattcagctttggctaactgtattataattagagtgatga 531
Query: 361 taatgtctgacatgcacatagcaatcagagagtaattgctagtaatttctcttaggataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taatgtctgacatgcacatagcaatcagagagtaattgctagtaatttctcttaggataa 471
Query: 421 agacttggcaacagatataaaagagtatctcaaggaacctaaatttaaaggcaaaccatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggacttggcaacagatataaaagagtatctcaaggaacctaaatttaaaggcaaaccatt 411
Query: 481 ggttctgtttcttttttattttagttctctcaattttaagnacactgattagcctatgcc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 410 ggttctgtttcttttttattttagttctctcaattttaagtacactgattagcctatgcc 351
Query: 541 atttaatgatttaaaattaaggcaatataagaaaccagtcagtagtagttcattaagttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atttaatgatttaaaattaaggcaatataagaaaccagtcagtagtagttcattaagttt 291
Query: 601 tataaaactaaatttaaagttgttgagagattagaatgggtataatgtttgtagttagag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tataaaactaaatttaaagttgttgagagattagaatgggtataatgtttgtagttagag 231
Query: 661 tgcaaaccttggtttttctgcttaacagtt 690
||||||||||||||||||||||||||||||
Sbjct: 230 tgcaaaccttggtttttctgcttaacagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
